Wall clock time and date at job start Tue Mar 31 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47084 * 2 1 4 4 C 1.50693 * 109.47336 * 239.99385 * 2 1 3 5 5 O 1.21213 * 120.00493 * 240.00372 * 4 2 1 6 6 O 1.34310 * 119.99805 * 59.72626 * 4 2 1 7 7 C 1.34922 * 117.00349 * 180.27868 * 6 4 2 8 8 H 1.08003 * 119.99659 * 359.97438 * 7 6 4 9 9 C 1.38755 * 120.00272 * 179.97438 * 7 6 4 10 10 N 1.31441 * 120.00098 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99825 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47079 * 60.00337 * 11 9 7 13 13 H 1.48500 * 109.46664 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47336 * 300.00039 * 11 9 7 15 15 C 1.50708 * 109.47186 * 119.99446 * 2 1 3 16 16 C 1.38237 * 119.99835 * 59.72584 * 15 2 1 17 17 C 1.38232 * 119.99671 * 179.76832 * 16 15 2 18 18 C 1.38233 * 120.00435 * 0.50542 * 17 16 15 19 19 C 1.50691 * 120.00237 * 179.72730 * 18 17 16 20 20 F 1.39901 * 109.47246 * 270.02111 * 19 18 17 21 21 F 1.39902 * 109.47526 * 30.01914 * 19 18 17 22 22 F 1.39902 * 109.47422 * 150.02238 * 19 18 17 23 23 C 1.38240 * 119.99556 * 359.74785 * 18 17 16 24 24 C 1.38232 * 120.00081 * 0.02562 * 23 18 17 25 25 H 1.09003 * 109.47049 * 300.00335 * 1 2 3 26 26 H 1.08993 * 109.46915 * 59.99943 * 1 2 3 27 27 H 1.08996 * 109.46830 * 180.02562 * 1 2 3 28 28 H 0.96993 * 120.00374 * 179.97438 * 10 9 7 29 29 H 1.07996 * 119.99938 * 0.02562 * 16 15 2 30 30 H 1.08001 * 119.99863 * 180.23220 * 17 16 15 31 31 H 1.07996 * 119.99781 * 179.97438 * 23 18 17 32 32 H 1.08001 * 119.99776 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.7292 -1.6960 -1.1191 6 8 1.7034 -0.2550 -2.4502 7 6 2.1813 -0.9404 -3.5095 8 1 2.7989 -1.8127 -3.3542 9 6 1.8793 -0.5247 -4.7985 10 7 1.1282 0.5372 -4.9875 11 14 2.5417 -1.4734 -6.2650 12 1 2.0465 -2.8724 -6.2141 13 1 2.0793 -0.8294 -7.5207 14 1 4.0261 -1.4719 -6.2261 15 6 2.0324 -0.7103 1.2306 16 6 1.6937 -2.0321 1.4523 17 6 2.1585 -2.6850 2.5786 18 6 2.9532 -2.0132 3.4885 19 6 3.4548 -2.7232 4.7194 20 9 2.5328 -2.5618 5.7592 21 9 3.6101 -4.0855 4.4413 22 9 4.6871 -2.1816 5.1007 23 6 3.2875 -0.6899 3.2694 24 6 2.8267 -0.0383 2.1407 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.9174 0.8281 -5.8885 29 1 1.0695 -2.5558 0.7435 30 1 1.8970 -3.7188 2.7499 31 1 3.9081 -0.1648 3.9804 32 1 3.0875 0.9957 1.9698 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798784574.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:44 Heat of formation + Delta-G solvation = -230.712789 kcal Electronic energy + Delta-G solvation = -22266.389654 eV Core-core repulsion = 18162.443696 eV Total energy + Delta-G solvation = -4103.945958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.19011 -48.70814 -48.64973 -41.46585 -40.20596 -37.34348 -35.47089 -34.27165 -32.15354 -31.54922 -27.68160 -27.09959 -25.22338 -23.98048 -23.04646 -21.16551 -19.85188 -19.53333 -19.46744 -19.41249 -18.36427 -17.08603 -16.94112 -16.35038 -16.09895 -15.88771 -15.74370 -15.49649 -15.36789 -15.11615 -14.90320 -14.81518 -14.57380 -14.47873 -14.13630 -13.94976 -13.62749 -13.37585 -13.03094 -13.00046 -12.65279 -12.37245 -12.21782 -12.13845 -12.05626 -11.89226 -10.92254 -10.68788 -10.08502 -10.02169 -8.53238 -6.32564 -0.15114 0.29581 1.31768 1.34447 1.49359 1.62805 1.65274 2.08467 2.38475 2.68768 2.89132 2.98645 3.00568 3.41084 3.47544 3.76824 3.87658 4.13599 4.18233 4.35710 4.43054 4.53912 4.70006 4.86020 4.89901 4.95707 5.11613 5.13365 5.17652 5.29964 5.50456 5.74391 5.84002 6.67749 6.92377 7.77895 8.66827 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.032202 B = 0.003527 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.315428 B = 7935.728413 C = 8329.682361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.034 4.034 3 H 0.129 0.871 4 C 0.399 3.601 5 O -0.575 6.575 6 O -0.239 6.239 7 C -0.421 4.421 8 H 0.079 0.921 9 C -0.001 4.001 10 N -0.900 5.900 11 Si 1.012 2.988 12 H -0.263 1.263 13 H -0.260 1.260 14 H -0.264 1.264 15 C -0.043 4.043 16 C -0.100 4.100 17 C -0.077 4.077 18 C -0.195 4.195 19 C 0.517 3.483 20 F -0.177 7.177 21 F -0.182 7.182 22 F -0.177 7.177 23 C -0.070 4.070 24 C -0.111 4.111 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.278 0.722 29 H 0.119 0.881 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.929 -1.250 17.385 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 H 0.147 0.853 4 C 0.247 3.753 5 O -0.472 6.472 6 O -0.147 6.147 7 C -0.496 4.496 8 H 0.097 0.903 9 C -0.201 4.201 10 N -0.537 5.537 11 Si 0.831 3.169 12 H -0.188 1.188 13 H -0.184 1.184 14 H -0.188 1.188 15 C -0.043 4.043 16 C -0.118 4.118 17 C -0.095 4.095 18 C -0.196 4.196 19 C 0.462 3.538 20 F -0.159 7.159 21 F -0.163 7.163 22 F -0.158 7.158 23 C -0.088 4.088 24 C -0.128 4.128 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.164 0.836 31 H 0.179 0.821 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.015 -1.385 17.267 17.352 hybrid contribution 0.371 -0.708 -0.713 1.071 sum 1.386 -2.093 16.554 16.743 Atomic orbital electron populations 1.21738 0.90062 1.02980 1.04134 1.19929 0.99291 1.00242 0.85879 0.85350 1.24196 0.80282 0.84464 0.86400 1.90552 1.39988 1.28879 1.87783 1.83886 1.64536 1.52469 1.13774 1.21332 1.33379 1.11619 0.83312 0.90297 1.26431 0.96007 0.97345 1.00343 1.70050 1.35424 1.24214 1.24059 0.84758 0.78802 0.77947 0.75350 1.18751 1.18381 1.18815 1.19740 0.96101 0.94426 0.94049 1.20976 1.00005 0.94337 0.96503 1.20987 0.95204 1.00544 0.92741 1.20053 1.06199 0.97113 0.96282 1.18182 0.75242 0.76691 0.83637 1.93218 1.66359 1.95302 1.60979 1.93183 1.95538 1.33890 1.93690 1.93183 1.44601 1.85700 1.92349 1.21139 0.97620 0.92244 0.97786 1.21308 0.96472 1.01773 0.93256 0.87978 0.91989 0.92655 0.91220 0.86328 0.83644 0.82106 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.93 71.98 0.64 -3.18 16 2 C -0.03 -1.15 3.01 -12.29 -0.04 -1.19 16 3 H 0.13 3.69 7.88 -2.38 -0.02 3.67 16 4 C 0.40 19.14 7.08 71.23 0.50 19.65 16 5 O -0.57 -30.37 14.36 20.77 0.30 -30.07 16 6 O -0.24 -13.56 9.64 14.85 0.14 -13.41 16 7 C -0.42 -25.08 9.65 67.94 0.66 -24.42 16 8 H 0.08 4.80 6.86 -2.91 -0.02 4.78 16 9 C 0.00 -0.04 5.49 84.87 0.47 0.43 16 10 N -0.90 -52.13 13.67 21.62 0.30 -51.83 16 11 Si 1.01 42.94 29.55 68.60 2.03 44.97 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 14 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 15 C -0.04 -1.28 4.39 -19.86 -0.09 -1.36 16 16 C -0.10 -3.04 7.94 22.27 0.18 -2.86 16 17 C -0.08 -2.00 9.40 22.27 0.21 -1.79 16 18 C -0.20 -4.67 5.45 -19.87 -0.11 -4.78 16 19 C 0.52 11.50 3.36 71.23 0.24 11.74 16 20 F -0.18 -3.87 17.30 44.97 0.78 -3.09 16 21 F -0.18 -4.30 16.46 44.97 0.74 -3.56 16 22 F -0.18 -3.86 16.46 44.97 0.74 -3.12 16 23 C -0.07 -1.51 9.40 22.27 0.21 -1.30 16 24 C -0.11 -2.59 9.67 22.27 0.22 -2.38 16 25 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.06 2.02 8.11 -2.39 -0.02 2.00 16 27 H 0.05 1.63 7.37 -2.39 -0.02 1.61 16 28 H 0.28 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.12 3.85 7.52 -2.91 -0.02 3.83 16 30 H 0.15 3.28 7.60 -2.91 -0.02 3.26 16 31 H 0.16 2.54 7.60 -2.91 -0.02 2.51 16 32 H 0.16 2.84 7.95 -2.91 -0.02 2.82 16 Total: -1.00 -69.96 299.88 9.28 -60.68 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.17 Total: 10.87 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 3.09 Total: -11.44 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.30 Total: -51.83 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: 0.44 Total: -43.48 kcal Atomic # 9 Polarization: -12.03 SS G_CDS: 2.26 Total: -9.77 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.96 9.28 -60.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798784574.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.032 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds