Wall clock time and date at job start Tue Mar 31 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47111 * 356.63207 * 3 2 1 5 5 C 1.36904 * 120.00387 * 115.21835 * 4 3 2 6 6 H 1.07999 * 120.00340 * 103.29798 * 5 4 3 7 7 C 1.39025 * 119.99980 * 283.57001 * 5 4 3 8 8 N 1.31384 * 119.99691 * 24.84486 * 7 5 4 9 9 Si 1.86796 * 120.00232 * 204.84704 * 7 5 4 10 10 H 1.48495 * 109.47241 * 59.99989 * 9 7 5 11 11 H 1.48499 * 109.47222 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46954 * 300.00078 * 9 7 5 13 13 C 1.34786 * 119.99348 * 295.20842 * 4 3 2 14 14 O 1.21624 * 119.99434 * 159.82591 * 13 4 3 15 15 C 1.47489 * 120.00147 * 339.83185 * 13 4 3 16 16 C 1.39033 * 119.89276 * 22.37680 * 15 13 4 17 17 C 1.39692 * 119.58207 * 179.97438 * 16 15 13 18 18 N 1.35470 * 133.00758 * 179.97438 * 17 16 15 19 19 N 1.28637 * 110.14134 * 180.02562 * 18 17 16 20 20 N 1.40225 * 109.53184 * 0.02562 * 19 18 17 21 21 H 0.96996 * 126.65346 * 180.02562 * 20 19 18 22 22 C 1.37311 * 106.68913 * 359.97438 * 20 19 18 23 23 C 1.39193 * 133.67602 * 180.02562 * 22 20 19 24 24 C 1.36573 * 120.13922 * 179.76331 * 23 22 20 25 25 F 1.35100 * 119.80661 * 180.24547 * 24 23 22 26 26 H 4.40637 * 5.51268 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47045 * 236.62602 * 3 2 1 28 28 H 1.09006 * 109.46727 * 116.62523 * 3 2 1 29 29 H 0.96992 * 120.00195 * 179.97438 * 8 7 5 30 30 H 1.07997 * 120.20669 * 359.95682 * 16 15 13 31 31 H 1.08002 * 119.93091 * 359.96364 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3780 0.0811 5 6 3.8397 -1.9169 -0.9616 6 1 4.9128 -2.0172 -0.8935 7 6 3.1744 -2.3299 -2.1104 8 7 2.0159 -1.7967 -2.4261 9 14 3.9277 -3.6427 -3.2050 10 1 4.1077 -4.8937 -2.4255 11 1 3.0281 -3.9022 -4.3576 12 1 5.2466 -3.1754 -3.7025 13 6 2.8911 -2.1156 1.1826 14 8 2.9556 -3.3290 1.1283 15 6 2.5461 -1.4515 2.4535 16 6 2.0214 -0.1640 2.4424 17 6 1.6964 0.4586 3.6498 18 7 1.1827 1.6749 3.9534 19 7 1.0581 1.7976 5.2278 20 7 1.5000 0.6249 5.8571 21 1 1.5152 0.4502 6.8111 22 6 1.9060 -0.2283 4.8608 23 6 2.4317 -1.5171 4.8540 24 6 2.7430 -2.1245 3.6710 25 9 3.2483 -3.3774 3.6719 26 1 -1.0497 -0.0003 0.0002 27 1 3.0091 0.5661 0.8582 28 1 3.0091 0.4614 -0.9188 29 1 1.5519 -2.0845 -3.2277 30 1 1.8664 0.3515 1.5061 31 1 2.5907 -2.0392 5.7859 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799086370.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:33 Heat of formation + Delta-G solvation = 122.257858 kcal Electronic energy + Delta-G solvation = -22374.990937 eV Core-core repulsion = 18769.332873 eV Total energy + Delta-G solvation = -3605.658064 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.06465 -43.27837 -40.98457 -38.05034 -37.23635 -35.13029 -34.35330 -33.15004 -31.47654 -31.17974 -28.42295 -27.00190 -25.22923 -24.40310 -23.62822 -21.77878 -19.86417 -19.45466 -19.22892 -18.76517 -17.85382 -17.39647 -17.07516 -17.05085 -16.39406 -16.30162 -15.91429 -15.76902 -15.45763 -14.82612 -14.65189 -14.13486 -13.75976 -13.51603 -13.38908 -13.28769 -12.77189 -12.74886 -12.56727 -12.42929 -12.18721 -11.70446 -11.38781 -10.97411 -10.61732 -10.57577 -9.97377 -9.62458 -9.20200 -8.36718 -6.37175 -0.83332 -0.36692 0.90537 1.22427 1.37911 1.45748 1.51312 1.75497 1.93482 1.99178 2.30638 2.51602 2.72787 2.90104 3.03999 3.10873 3.35398 3.52209 3.62411 3.78723 3.94758 4.17232 4.44868 4.51967 4.64463 4.76284 4.83286 4.85717 5.22141 5.31126 5.45997 5.95301 6.32291 6.64192 6.72917 6.86888 7.13872 7.19681 7.93335 8.64564 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.005850 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.649824 B = 4785.113044 C = 5682.777565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.200 4.200 3 C 0.197 3.803 4 N -0.450 5.450 5 C -0.377 4.377 6 H 0.074 0.926 7 C 0.039 3.961 8 N -0.856 5.856 9 Si 0.958 3.042 10 H -0.287 1.287 11 H -0.277 1.277 12 H -0.254 1.254 13 C 0.526 3.474 14 O -0.587 6.587 15 C -0.185 4.185 16 C -0.016 4.016 17 C -0.047 4.047 18 N -0.217 5.217 19 N -0.002 5.002 20 N -0.467 5.467 21 H 0.470 0.530 22 C 0.135 3.865 23 C -0.147 4.147 24 C 0.182 3.818 25 F -0.122 7.122 26 H 0.240 0.760 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.271 0.729 30 H 0.201 0.799 31 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 6.071 14.770 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.201 4.201 3 C 0.076 3.924 4 N -0.170 5.170 5 C -0.503 4.503 6 H 0.092 0.908 7 C -0.170 4.170 8 N -0.487 5.487 9 Si 0.782 3.218 10 H -0.213 1.213 11 H -0.202 1.202 12 H -0.178 1.178 13 C 0.316 3.684 14 O -0.470 6.470 15 C -0.192 4.192 16 C -0.037 4.037 17 C -0.170 4.170 18 N -0.098 5.098 19 N 0.016 4.984 20 N -0.193 5.193 21 H 0.322 0.678 22 C 0.010 3.990 23 C -0.170 4.170 24 C 0.158 3.842 25 F -0.100 7.100 26 H 0.257 0.743 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.216 0.784 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.391 6.885 14.719 16.425 hybrid contribution 0.533 -2.112 -0.501 2.235 sum -1.858 4.772 14.218 15.112 Atomic orbital electron populations 1.25422 0.96565 0.98392 1.01305 1.23310 0.95320 1.01889 0.99580 1.19377 0.83596 0.86446 1.02969 1.43044 1.49352 1.10317 1.14287 1.18985 0.91306 1.45041 0.95013 0.90841 1.26421 0.95663 0.96027 0.98925 1.70024 1.16650 1.37275 1.24766 0.85577 0.79397 0.79649 0.77150 1.21340 1.20164 1.17827 1.18727 0.78259 0.86736 0.84720 1.90636 1.54724 1.15351 1.86240 1.20095 1.09030 0.96337 0.93743 1.22691 0.89595 0.91712 0.99750 1.19904 1.09755 0.92947 0.94425 1.74889 1.12344 1.15926 1.06622 1.81508 1.13786 1.03350 0.99792 1.47568 1.50663 1.10699 1.10351 0.67803 1.18923 0.97902 0.93067 0.89080 1.19569 1.06123 0.92771 0.98566 1.17161 0.94498 0.79812 0.92710 1.91575 1.83789 1.37412 1.97205 0.74338 0.87697 0.88712 0.91911 0.78375 0.78910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.38 19.24 74.32 1.43 -5.95 16 2 C -0.20 -8.28 9.51 31.13 0.30 -7.98 16 3 C 0.20 8.35 5.10 84.57 0.43 8.78 16 4 N -0.45 -22.81 2.47 -679.36 -1.68 -24.49 16 5 C -0.38 -20.74 8.31 84.09 0.70 -20.04 16 6 H 0.07 4.04 7.95 -2.91 -0.02 4.02 16 7 C 0.04 2.11 5.46 84.95 0.46 2.58 16 8 N -0.86 -46.81 12.74 21.68 0.28 -46.53 16 9 Si 0.96 43.61 29.62 68.60 2.03 45.64 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.25 -10.72 7.11 99.48 0.71 -10.02 16 13 C 0.53 26.68 6.94 86.68 0.60 27.28 16 14 O -0.59 -34.51 15.69 -4.11 -0.06 -34.57 16 15 C -0.18 -7.29 5.83 -20.10 -0.12 -7.40 16 16 C -0.02 -0.56 7.28 22.81 0.17 -0.39 16 17 C -0.05 -1.39 7.26 39.56 0.29 -1.10 16 18 N -0.22 -6.31 12.40 -52.19 -0.65 -6.95 16 19 N 0.00 -0.05 13.82 37.02 0.51 0.46 16 20 N -0.47 -7.95 7.54 -51.45 -0.39 -8.34 16 21 H 0.47 3.40 8.96 -213.24 -1.91 1.49 16 22 C 0.14 3.12 7.34 39.14 0.29 3.41 16 23 C -0.15 -3.34 9.97 22.11 0.22 -3.12 16 24 C 0.18 6.09 7.20 22.43 0.16 6.25 16 25 F -0.12 -4.60 15.74 44.97 0.71 -3.89 16 26 H 0.24 6.77 7.80 -4.43 -0.03 6.73 16 27 H 0.11 3.74 5.39 -2.39 -0.01 3.72 16 28 H 0.09 4.13 7.90 -2.38 -0.02 4.11 16 29 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.20 7.10 1.79 -36.81 -0.07 7.03 16 31 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -72.85 286.92 4.94 -67.91 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -0.74 Total: 8.46 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 4.93 Total: 2.30 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -1.93 Total: -85.85 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.06 Total: -34.57 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.71 Total: -3.89 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.85 4.94 -67.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799086370.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.168 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds