Wall clock time and date at job start Tue Mar 31 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99951 * 2 1 4 4 O 1.20828 * 119.99947 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99805 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46890 * 185.64263 * 5 3 2 7 7 C 1.53002 * 115.54907 * 65.56180 * 6 5 3 8 8 O 1.45204 * 109.46921 * 63.40592 * 7 6 5 9 9 C 1.34226 * 116.99449 * 179.97438 * 8 7 6 10 10 O 1.20834 * 120.00462 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00036 * 180.02562 * 9 8 7 12 12 S 1.80994 * 109.47361 * 180.02562 * 11 9 8 13 13 C 1.76210 * 99.99992 * 179.97438 * 12 11 9 14 14 H 1.07996 * 119.99733 * 359.97438 * 13 12 11 15 15 C 1.38798 * 119.99944 * 179.97438 * 13 12 11 16 16 N 1.31631 * 120.00086 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99998 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47039 * 59.99656 * 17 15 13 19 19 H 1.48493 * 109.47381 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46727 * 299.99882 * 17 15 13 21 21 C 1.52998 * 117.49889 * 211.22617 * 6 5 3 22 22 C 1.52998 * 117.50156 * 279.89000 * 6 5 3 23 23 H 1.09002 * 109.47283 * 300.00227 * 1 2 3 24 24 H 1.09003 * 109.47123 * 59.99581 * 1 2 3 25 25 H 1.08994 * 109.47637 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46871 * 65.64848 * 5 3 2 27 27 H 1.09001 * 109.47448 * 305.64396 * 5 3 2 28 28 H 1.09005 * 109.46937 * 303.40916 * 7 6 5 29 29 H 1.08998 * 109.46942 * 183.40764 * 7 6 5 30 30 H 1.09010 * 109.46921 * 300.00205 * 11 9 8 31 31 H 1.09001 * 109.47151 * 59.99934 * 11 9 8 32 32 H 0.96998 * 120.00201 * 180.02562 * 16 15 13 33 33 H 1.08995 * 117.49897 * 215.00467 * 21 6 5 34 34 H 1.09002 * 117.49725 * 0.02898 * 21 6 5 35 35 H 1.09003 * 117.49826 * 359.97438 * 22 6 5 36 36 H 1.08997 * 117.50164 * 145.00037 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0004 2.7351 0.1423 7 6 3.6460 3.4028 1.4726 8 8 4.3444 2.7297 2.5531 9 6 4.1406 3.1971 3.7947 10 8 3.4027 4.1373 3.9729 11 6 4.8320 2.5494 4.9667 12 16 4.3571 3.3993 6.4925 13 6 5.2818 2.4632 7.6646 14 1 5.9005 1.6426 7.3329 15 6 5.2149 2.7806 9.0141 16 7 4.4611 3.7812 9.4184 17 14 6.1956 1.7888 10.2566 18 1 7.6424 1.8861 9.9364 19 1 5.9537 2.3252 11.6200 20 1 5.7708 0.3669 10.2009 21 6 5.3103 3.1512 -0.5300 22 6 3.9710 3.6062 -1.1152 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.9516 0.8705 -0.9354 27 1 3.9602 0.6960 0.8360 28 1 2.5706 3.3357 1.6376 29 1 3.9446 4.4507 1.4440 30 1 4.5380 1.5015 5.0282 31 1 5.9119 2.6166 4.8339 32 1 4.4146 4.0032 10.3614 33 1 5.9195 3.9005 -0.0246 34 1 5.8626 2.3846 -1.0736 35 1 3.6428 3.1387 -2.0436 36 1 3.6992 4.6548 -0.9949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799467262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:58 Heat of formation + Delta-G solvation = -150.648611 kcal Electronic energy + Delta-G solvation = -20225.629279 eV Core-core repulsion = 16802.455856 eV Total energy + Delta-G solvation = -3423.173423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.84389 -39.95691 -38.27566 -36.47020 -35.77437 -32.47901 -30.61487 -29.97704 -27.74493 -26.94315 -25.52226 -22.76863 -21.84677 -20.95627 -19.42659 -17.90978 -17.77114 -17.20464 -16.83257 -16.64488 -16.26593 -15.80364 -15.01447 -14.84065 -14.54979 -14.10656 -13.77587 -13.68944 -13.30934 -12.72852 -12.60896 -12.54151 -12.27330 -12.05264 -11.78804 -11.50499 -11.09502 -11.05898 -11.01604 -10.91014 -10.83170 -10.67004 -10.47034 -10.05272 -9.92774 -9.87336 -9.10151 -8.35047 -6.59529 -6.26397 -3.99250 2.02398 2.41996 2.62869 2.69918 3.22201 3.22454 3.27319 3.43044 3.68864 4.15474 4.24481 4.36971 4.50561 4.58418 4.80648 4.88329 4.96839 5.09199 5.11389 5.20675 5.30674 5.35540 5.38483 5.42003 5.53671 5.60841 5.67325 5.79433 5.82737 5.85718 6.08682 6.19645 6.73161 7.55562 7.55717 8.20814 8.30770 9.18753 10.81066 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.003289 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.956792 B = 8510.976695 C = 9035.240252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.499 6.499 5 C -0.075 4.075 6 C -0.120 4.120 7 C 0.101 3.899 8 O -0.360 6.360 9 C 0.478 3.522 10 O -0.488 6.488 11 C -0.128 4.128 12 S -0.059 6.059 13 C -0.537 4.537 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.868 5.868 17 Si 0.922 3.078 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 C -0.158 4.158 22 C -0.151 4.151 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.270 0.730 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 -6.918 -22.272 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.302 3.698 4 O -0.386 6.386 5 C -0.113 4.113 6 C -0.120 4.120 7 C 0.027 3.973 8 O -0.279 6.279 9 C 0.319 3.681 10 O -0.373 6.373 11 C -0.276 4.276 12 S 0.167 5.833 13 C -0.685 4.685 14 H 0.094 0.906 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.748 3.252 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.195 4.195 22 C -0.188 4.188 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.752 -5.327 -21.937 22.742 hybrid contribution 1.064 -1.537 0.604 1.964 sum -1.688 -6.863 -21.333 22.473 Atomic orbital electron populations 1.23268 0.76223 1.03688 1.02663 1.86499 1.23571 1.33578 1.84220 1.23787 0.92156 0.81395 0.72424 1.90677 1.67133 1.36186 1.44568 1.20871 0.87573 0.96622 1.06211 1.20966 1.03759 0.94029 0.93277 1.22449 0.97415 0.95324 0.82150 1.86460 1.66555 1.58664 1.16184 1.23304 0.79735 0.81976 0.83105 1.90677 1.34743 1.26790 1.85110 1.23290 1.03516 1.04607 0.96145 1.85441 1.62364 1.43336 0.92126 1.22807 1.32574 1.19701 0.93403 0.90631 1.25002 0.95506 0.95383 0.97602 1.70004 1.36881 1.26793 1.16579 0.86175 0.79973 0.79822 0.79255 1.19836 1.20788 1.19836 1.23145 0.90199 1.03581 1.02544 1.23029 1.00190 1.00293 0.95330 0.91672 0.91977 0.88107 0.87229 0.86380 0.89959 0.90889 0.87999 0.87910 0.92017 0.87857 0.88038 0.88223 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.84 10.57 -39.26 -0.41 -4.26 16 3 C 0.46 5.30 7.75 36.01 0.28 5.58 16 4 O -0.50 -7.06 14.33 -18.75 -0.27 -7.33 16 5 C -0.08 -0.69 5.63 -27.88 -0.16 -0.85 16 6 C -0.12 -1.26 1.28 -154.51 -0.20 -1.45 16 7 C 0.10 1.43 5.07 37.16 0.19 1.62 16 8 O -0.36 -5.83 10.07 -39.25 -0.40 -6.23 16 9 C 0.48 9.43 7.98 36.01 0.29 9.72 16 10 O -0.49 -11.15 15.61 -18.76 -0.29 -11.44 16 11 C -0.13 -2.63 6.27 36.01 0.23 -2.41 16 12 S -0.06 -1.59 20.58 -107.50 -2.21 -3.80 16 13 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 14 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 15 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 16 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 17 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 21 C -0.16 -1.29 9.94 -26.69 -0.27 -1.56 16 22 C -0.15 -1.30 9.83 -26.69 -0.26 -1.56 16 23 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 24 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.11 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.12 1.08 8.06 -51.93 -0.42 0.66 16 28 H 0.08 1.33 6.66 -51.93 -0.35 0.98 16 29 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 30 H 0.10 1.94 8.14 -51.91 -0.42 1.52 16 31 H 0.10 1.95 8.14 -51.92 -0.42 1.52 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 334.81 15.07 5.05 5.05 Total: -1.00 -34.31 334.81 -6.42 -40.73 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -4.95 Total: -1.31 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 1.36 Total: -2.37 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 0.73 Total: -25.17 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -1.37 Total: -29.26 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.31 -6.42 -40.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799467262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.919 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds