Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34230 * 116.99951 * 2 1 4 4 O 1.20828 * 119.99947 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99805 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46890 * 185.64263 * 5 3 2 7 7 C 1.53002 * 115.54907 * 65.56180 * 6 5 3 8 8 O 1.45204 * 109.46921 * 63.40592 * 7 6 5 9 9 C 1.34226 * 116.99449 * 179.97438 * 8 7 6 10 10 O 1.20834 * 120.00462 * 0.02562 * 9 8 7 11 11 C 1.50701 * 120.00036 * 180.02562 * 9 8 7 12 12 S 1.80994 * 109.47361 * 180.02562 * 11 9 8 13 13 C 1.76210 * 99.99992 * 179.97438 * 12 11 9 14 14 H 1.07996 * 119.99733 * 359.97438 * 13 12 11 15 15 C 1.38798 * 119.99944 * 179.97438 * 13 12 11 16 16 N 1.31631 * 120.00086 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99998 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47039 * 59.99656 * 17 15 13 19 19 H 1.48493 * 109.47381 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46727 * 299.99882 * 17 15 13 21 21 C 1.52998 * 117.49889 * 211.22617 * 6 5 3 22 22 C 1.52998 * 117.50156 * 279.89000 * 6 5 3 23 23 H 1.09002 * 109.47283 * 300.00227 * 1 2 3 24 24 H 1.09003 * 109.47123 * 59.99581 * 1 2 3 25 25 H 1.08994 * 109.47637 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46871 * 65.64848 * 5 3 2 27 27 H 1.09001 * 109.47448 * 305.64396 * 5 3 2 28 28 H 1.09005 * 109.46937 * 303.40916 * 7 6 5 29 29 H 1.08998 * 109.46942 * 183.40764 * 7 6 5 30 30 H 1.09010 * 109.46921 * 300.00205 * 11 9 8 31 31 H 1.09001 * 109.47151 * 59.99934 * 11 9 8 32 32 H 0.96998 * 120.00201 * 180.02562 * 16 15 13 33 33 H 1.08995 * 117.49897 * 215.00467 * 21 6 5 34 34 H 1.09002 * 117.49725 * 0.02898 * 21 6 5 35 35 H 1.09003 * 117.49826 * 359.97438 * 22 6 5 36 36 H 1.08997 * 117.50164 * 145.00037 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0004 2.7351 0.1423 7 6 3.6460 3.4028 1.4726 8 8 4.3444 2.7297 2.5531 9 6 4.1406 3.1971 3.7947 10 8 3.4027 4.1373 3.9729 11 6 4.8320 2.5494 4.9667 12 16 4.3571 3.3993 6.4925 13 6 5.2818 2.4632 7.6646 14 1 5.9005 1.6426 7.3329 15 6 5.2149 2.7806 9.0141 16 7 4.4611 3.7812 9.4184 17 14 6.1956 1.7888 10.2566 18 1 7.6424 1.8861 9.9364 19 1 5.9537 2.3252 11.6200 20 1 5.7708 0.3669 10.2009 21 6 5.3103 3.1512 -0.5300 22 6 3.9710 3.6062 -1.1152 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.9516 0.8705 -0.9354 27 1 3.9602 0.6960 0.8360 28 1 2.5706 3.3357 1.6376 29 1 3.9446 4.4507 1.4440 30 1 4.5380 1.5015 5.0282 31 1 5.9119 2.6166 4.8339 32 1 4.4146 4.0032 10.3614 33 1 5.9195 3.9005 -0.0246 34 1 5.8626 2.3846 -1.0736 35 1 3.6428 3.1387 -2.0436 36 1 3.6992 4.6548 -0.9949 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799467262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = -171.220227 kcal Electronic energy + Delta-G solvation = -20226.521331 eV Core-core repulsion = 16802.455856 eV Total energy + Delta-G solvation = -3424.065475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.82200 -41.31527 -39.18009 -37.44928 -37.10843 -34.61094 -31.65361 -31.29712 -28.69218 -27.94156 -27.61521 -23.45669 -22.72766 -22.41226 -20.32844 -19.86341 -18.74856 -18.56808 -17.84149 -17.78907 -17.42651 -16.95300 -16.88017 -16.16366 -15.90218 -15.55535 -14.74100 -14.58170 -14.52731 -14.36553 -13.98735 -13.59570 -13.30587 -13.19022 -12.98977 -12.86548 -12.69851 -12.45859 -12.36788 -11.96168 -11.81117 -11.79194 -11.74347 -11.67838 -11.19135 -11.14131 -10.86589 -10.38520 -8.74952 -8.37072 -6.17772 0.98578 1.09743 1.16826 1.40925 1.45623 1.54383 1.70193 1.84979 2.24389 2.84035 2.97991 3.25313 3.46685 3.56057 3.62194 3.86513 3.92055 4.09945 4.16997 4.27220 4.28888 4.32286 4.42086 4.44315 4.60833 4.68715 4.71790 4.78896 4.95726 5.03650 5.23196 5.25454 5.39753 5.40895 6.18080 6.65626 6.71635 7.04260 8.72064 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.003289 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.956792 B = 8510.976695 C = 9035.240252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.366 6.366 3 C 0.455 3.545 4 O -0.534 6.534 5 C -0.071 4.071 6 C -0.141 4.141 7 C 0.099 3.901 8 O -0.343 6.343 9 C 0.485 3.515 10 O -0.526 6.526 11 C -0.105 4.105 12 S -0.143 6.143 13 C -0.548 4.548 14 H 0.088 0.912 15 C 0.016 3.984 16 N -0.911 5.911 17 Si 1.001 2.999 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.261 1.261 21 C -0.139 4.139 22 C -0.146 4.146 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.131 0.869 26 H 0.148 0.852 27 H 0.120 0.880 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.272 0.728 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -9.149 -23.712 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.300 3.700 4 O -0.423 6.423 5 C -0.108 4.108 6 C -0.141 4.141 7 C 0.025 3.975 8 O -0.260 6.260 9 C 0.327 3.673 10 O -0.414 6.414 11 C -0.254 4.254 12 S 0.084 5.916 13 C -0.696 4.696 14 H 0.106 0.894 15 C -0.189 4.189 16 N -0.548 5.548 17 Si 0.822 3.178 18 H -0.185 1.185 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.175 4.175 22 C -0.183 4.183 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.149 0.851 26 H 0.166 0.834 27 H 0.138 0.862 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.900 -7.585 -23.410 24.625 hybrid contribution 0.426 -0.836 0.903 1.302 sum -0.474 -8.421 -22.508 24.036 Atomic orbital electron populations 1.23491 0.75204 1.05563 1.02200 1.86499 1.24698 1.33173 1.83853 1.24371 0.93202 0.81085 0.71354 1.90666 1.68067 1.37269 1.46316 1.20987 0.85765 0.95799 1.08248 1.20967 1.06544 0.95036 0.91594 1.22624 0.95887 0.95756 0.83193 1.86446 1.66162 1.58172 1.15216 1.23119 0.78850 0.81182 0.84105 1.90672 1.36437 1.28518 1.85808 1.23083 1.04752 1.04515 0.93021 1.85606 1.63638 1.45803 0.96597 1.23171 1.32620 1.19909 0.93880 0.89388 1.26144 0.96476 0.96424 0.99892 1.70167 1.38688 1.28760 1.17140 0.84965 0.78537 0.78265 0.76012 1.18500 1.20446 1.18550 1.23266 0.89447 1.03637 1.01173 1.23134 1.00507 0.99747 0.94895 0.93101 0.91541 0.85097 0.83406 0.86167 0.92426 0.91315 0.85923 0.85625 0.91859 0.88365 0.85132 0.86378 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.37 -7.31 10.57 -51.41 -0.54 -7.86 16 3 C 0.46 10.06 7.75 71.24 0.55 10.61 16 4 O -0.53 -15.21 14.33 21.96 0.31 -14.89 16 5 C -0.07 -1.13 5.63 29.85 0.17 -0.96 16 6 C -0.14 -2.69 1.28 -52.18 -0.07 -2.76 16 7 C 0.10 2.81 5.07 71.98 0.37 3.18 16 8 O -0.34 -10.81 10.07 -51.37 -0.52 -11.33 16 9 C 0.48 19.15 7.98 71.24 0.57 19.72 16 10 O -0.53 -24.78 15.61 21.94 0.34 -24.44 16 11 C -0.11 -4.26 6.27 71.24 0.45 -3.82 16 12 S -0.14 -7.89 20.58 -56.49 -1.16 -9.05 16 13 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 14 H 0.09 4.55 7.80 -2.91 -0.02 4.53 16 15 C 0.02 0.88 5.49 84.86 0.47 1.34 16 16 N -0.91 -55.36 13.22 21.65 0.29 -55.08 16 17 Si 1.00 42.86 29.55 68.60 2.03 44.88 16 18 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 21 C -0.14 -1.84 9.94 30.62 0.30 -1.53 16 22 C -0.15 -2.19 9.83 30.62 0.30 -1.89 16 23 H 0.05 0.94 8.13 -2.39 -0.02 0.92 16 24 H 0.07 0.98 8.13 -2.39 -0.02 0.96 16 25 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.15 1.21 8.09 -2.39 -0.02 1.19 16 27 H 0.12 1.88 8.06 -2.39 -0.02 1.86 16 28 H 0.06 1.93 6.66 -2.38 -0.02 1.92 16 29 H 0.07 1.98 8.10 -2.39 -0.02 1.96 16 30 H 0.12 4.47 8.14 -2.39 -0.02 4.45 16 31 H 0.13 4.53 8.14 -2.39 -0.02 4.51 16 32 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -76.54 334.81 6.77 -69.76 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.08 Total: 12.66 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.95 Total: -4.65 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.29 Total: -55.08 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -0.40 Total: -58.52 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: -7.89 SS G_CDS: -1.16 Total: -9.05 kcal Total: -76.54 6.77 -69.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799467262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.457 kcal (2) G-P(sol) polarization free energy of solvation -76.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds