Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99964 * 2 1 4 4 H 1.48494 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47192 * 299.99734 * 3 2 1 6 6 H 1.48505 * 109.47277 * 59.99634 * 3 2 1 7 7 C 1.38701 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99980 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.35504 * 117.00282 * 185.05951 * 9 7 2 11 11 C 1.38840 * 120.16313 * 354.40668 * 10 9 7 12 12 C 1.38017 * 120.07302 * 180.27585 * 11 10 9 13 13 C 1.38583 * 120.41819 * 359.74132 * 12 11 10 14 14 C 1.37806 * 120.33274 * 359.97438 * 13 12 11 15 15 C 1.39723 * 119.91054 * 0.02562 * 14 13 12 16 16 C 1.47402 * 120.20149 * 179.97438 * 15 14 13 17 17 O 1.21512 * 119.99671 * 180.02562 * 16 15 14 18 18 O 1.34750 * 119.99868 * 0.02562 * 16 15 14 19 19 C 1.45206 * 117.00108 * 180.02562 * 18 16 15 20 20 C 1.50693 * 109.47351 * 179.97438 * 19 18 16 21 21 C 1.39870 * 126.04230 * 269.99548 * 20 19 18 22 22 N 1.30840 * 108.20340 * 179.74170 * 21 20 19 23 23 N 1.40086 * 108.20394 * 0.40706 * 22 21 20 24 24 H 0.96997 * 126.03465 * 179.85891 * 23 22 21 25 25 C 1.34946 * 107.92622 * 359.58847 * 23 22 21 26 26 H 0.97001 * 119.99800 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.96082 * 359.97438 * 11 10 9 28 28 H 1.08005 * 119.78977 * 179.76318 * 12 11 10 29 29 H 1.07997 * 119.83393 * 180.02562 * 13 12 11 30 30 H 1.07999 * 120.04184 * 180.02562 * 14 13 12 31 31 H 1.09001 * 109.47305 * 59.99687 * 19 18 16 32 32 H 1.09004 * 109.46813 * 299.99738 * 19 18 16 33 33 H 1.07999 * 125.89474 * 0.02562 * 21 20 19 34 34 H 1.07998 * 126.12584 * 180.22039 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0087 -1.2012 0.0005 8 1 3.0886 -1.2012 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0685 -3.5028 0.1075 11 6 3.4554 -3.4402 0.0942 12 6 4.2010 -4.5970 0.1976 13 6 3.5744 -5.8269 0.3207 14 6 2.1989 -5.9083 0.3417 15 6 1.4306 -4.7459 0.2380 16 6 -0.0412 -4.8255 0.2592 17 8 -0.7057 -3.8122 0.1683 18 8 -0.6495 -6.0218 0.3794 19 6 -2.1015 -6.0247 0.3925 20 6 -2.5998 -7.4399 0.5321 21 6 -2.8820 -8.3204 -0.5174 22 7 -3.2850 -9.4539 -0.0029 23 7 -3.2809 -9.3272 1.3922 24 1 -3.5362 -10.0136 2.0282 25 6 -2.8535 -8.0836 1.6951 26 1 -0.4850 0.8401 -0.0004 27 1 3.9513 -2.4855 -0.0021 28 1 5.2796 -4.5433 0.1828 29 1 4.1670 -6.7262 0.4013 30 1 1.7155 -6.8692 0.4382 31 1 -2.4741 -5.5989 -0.5392 32 1 -2.4584 -5.4289 1.2326 33 1 -2.7800 -8.1037 -1.5705 34 1 -2.7353 -7.6751 2.6879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000803304086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -27.293744 kcal Electronic energy + Delta-G solvation = -21598.228483 eV Core-core repulsion = 18077.252929 eV Total energy + Delta-G solvation = -3520.975555 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.22184 -41.42021 -40.27650 -38.10153 -37.20837 -34.34229 -33.12033 -32.32348 -31.80671 -30.60653 -27.58721 -27.12090 -24.81237 -23.26681 -23.01634 -21.79107 -21.19286 -19.88171 -19.27198 -18.85193 -18.23880 -17.25831 -17.10678 -16.33265 -16.13042 -15.61599 -15.54995 -15.47392 -15.40452 -15.16688 -14.42914 -14.39992 -14.22732 -13.56064 -13.52830 -13.28839 -13.00257 -12.67457 -12.54987 -12.32633 -12.07622 -11.93003 -11.56104 -11.43014 -11.03667 -10.84260 -10.67676 -9.89174 -9.72455 -9.08874 -8.45756 -6.16684 -0.00043 0.71583 0.82030 1.35605 1.36080 1.45647 1.55169 1.80755 1.97919 2.16246 2.28881 2.85089 3.18105 3.40457 3.66290 3.91228 4.05103 4.12840 4.14265 4.28644 4.42595 4.53413 4.55555 4.63205 4.67955 4.97655 5.01887 5.08230 5.15613 5.45326 5.50225 5.50553 5.65249 5.69258 5.96307 6.14880 6.35293 6.61619 6.93415 7.07616 7.74788 8.74568 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.004026 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.131040 B = 6953.620056 C = 8133.225042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.019 4.019 3 Si 1.023 2.977 4 H -0.244 1.244 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.427 4.427 8 H 0.111 0.889 9 O -0.187 6.187 10 C 0.158 3.842 11 C -0.256 4.256 12 C -0.028 4.028 13 C -0.205 4.205 14 C -0.011 4.011 15 C -0.236 4.236 16 C 0.499 3.501 17 O -0.531 6.531 18 O -0.352 6.352 19 C 0.146 3.854 20 C -0.268 4.268 21 C 0.067 3.933 22 N -0.323 5.323 23 N -0.463 5.463 24 H 0.457 0.543 25 C 0.107 3.893 26 H 0.272 0.728 27 H 0.131 0.869 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.197 0.803 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 -15.893 4.119 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.219 4.219 3 Si 0.841 3.159 4 H -0.167 1.167 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.503 4.503 8 H 0.128 0.872 9 O -0.089 6.089 10 C 0.103 3.897 11 C -0.275 4.275 12 C -0.046 4.046 13 C -0.224 4.224 14 C -0.029 4.029 15 C -0.239 4.239 16 C 0.347 3.653 17 O -0.422 6.422 18 O -0.270 6.270 19 C 0.072 3.928 20 C -0.280 4.280 21 C -0.120 4.120 22 N -0.145 5.145 23 N -0.172 5.172 24 H 0.304 0.696 25 C -0.044 4.044 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.177 0.823 29 H 0.181 0.819 30 H 0.171 0.829 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.213 0.787 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 0.330 -16.617 3.814 17.053 hybrid contribution -0.135 1.716 0.301 1.747 sum 0.195 -14.902 4.115 15.461 Atomic orbital electron populations 1.70306 1.08351 1.28709 1.46431 1.26755 0.96746 1.03073 0.95332 0.84489 0.78521 0.74401 0.78473 1.16734 1.19445 1.19428 1.22120 0.92889 0.81473 1.53802 0.87177 1.84147 1.35407 1.12289 1.77070 1.19969 0.91797 0.86972 0.90998 1.21291 0.91862 1.01184 1.13206 1.21508 1.00974 0.91012 0.91122 1.21199 0.93634 0.98717 1.08803 1.21354 0.94379 0.95797 0.91414 1.18516 0.88940 0.93295 1.23132 1.21335 0.89569 0.81192 0.73231 1.90987 1.67059 1.37268 1.46856 1.86569 1.23927 1.32092 1.84364 1.20956 0.75939 0.93450 1.02467 1.19695 1.16886 0.97597 0.93802 1.24132 0.96692 0.89887 1.01261 1.77316 1.25670 1.22675 0.88887 1.46342 1.52408 1.12458 1.06002 0.69594 1.22930 0.94918 0.85570 1.00951 0.91873 0.85183 0.82302 0.81905 0.82906 0.91562 0.91041 0.78661 0.76988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.32 13.67 21.62 0.30 -57.02 16 2 C -0.02 -1.11 5.49 84.85 0.47 -0.65 16 3 Si 1.02 42.82 29.55 68.60 2.03 44.85 16 4 H -0.24 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 7 C -0.43 -25.06 9.49 67.93 0.64 -24.41 16 8 H 0.11 5.75 5.21 -2.91 -0.02 5.73 16 9 O -0.19 -11.58 7.84 1.02 0.01 -11.57 16 10 C 0.16 8.00 6.66 22.92 0.15 8.16 16 11 C -0.26 -10.62 9.16 22.36 0.20 -10.42 16 12 C -0.03 -0.86 10.03 22.30 0.22 -0.63 16 13 C -0.21 -5.68 10.02 22.25 0.22 -5.46 16 14 C -0.01 -0.38 9.61 22.53 0.22 -0.16 16 15 C -0.24 -10.56 5.89 -20.00 -0.12 -10.67 16 16 C 0.50 23.37 7.89 70.24 0.55 23.92 16 17 O -0.53 -30.42 14.96 26.79 0.40 -30.02 16 18 O -0.35 -12.96 9.45 -56.61 -0.54 -13.50 16 19 C 0.15 4.58 5.95 71.23 0.42 5.00 16 20 C -0.27 -6.55 5.74 -20.14 -0.12 -6.67 16 21 C 0.07 1.58 11.96 85.24 1.02 2.60 16 22 N -0.32 -7.47 12.70 -57.02 -0.72 -8.19 16 23 N -0.46 -7.61 7.36 -57.59 -0.42 -8.04 16 24 H 0.46 3.98 8.96 -213.33 -1.91 2.06 16 25 C 0.11 1.89 11.90 83.54 0.99 2.88 16 26 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 27 H 0.13 5.37 5.64 -2.91 -0.02 5.36 16 28 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 29 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.15 4.18 7.61 -2.91 -0.02 4.16 16 31 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.20 3.91 8.06 -2.91 -0.02 3.89 16 34 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -84.82 310.88 5.19 -79.63 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.75 Total: 20.36 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 4.89 Total: -16.50 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -0.85 Total: -73.25 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -0.13 Total: -55.09 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -84.82 5.19 -79.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000803304086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.338 kcal (2) G-P(sol) polarization free energy of solvation -84.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds