Wall clock time and date at job start Tue Mar 31 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99955 * 2 1 4 4 H 1.48502 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47211 * 300.00182 * 3 2 1 6 6 H 1.48507 * 109.47345 * 59.99945 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27039 * 11 10 9 13 13 N 1.34784 * 119.99635 * 179.97438 * 11 10 9 14 14 N 1.40104 * 119.99625 * 179.97438 * 13 11 10 15 15 C 1.39805 * 119.99548 * 179.97438 * 14 13 11 16 16 C 1.38858 * 120.02933 * 359.72729 * 15 14 13 17 17 C 1.38351 * 119.96819 * 179.77056 * 16 15 14 18 18 F 1.35101 * 119.98505 * 180.25117 * 17 16 15 19 19 C 1.38610 * 120.02846 * 0.50353 * 17 16 15 20 20 F 1.35105 * 119.97087 * 179.72312 * 19 17 16 21 21 C 1.38612 * 120.06000 * 359.75228 * 19 17 16 22 22 F 1.35107 * 119.98532 * 179.97438 * 21 19 17 23 23 C 1.38347 * 120.02943 * 359.97438 * 21 19 17 24 24 H 0.97000 * 120.00297 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47392 * 59.99708 * 9 7 2 26 26 H 1.09002 * 109.47260 * 299.99953 * 9 7 2 27 27 H 1.09005 * 109.47089 * 59.99750 * 10 9 7 28 28 H 1.09002 * 109.46787 * 300.00092 * 10 9 7 29 29 H 0.96999 * 120.00044 * 0.02562 * 13 11 10 30 30 H 0.96999 * 120.00331 * 0.02562 * 14 13 11 31 31 H 1.07993 * 120.01929 * 0.02562 * 16 15 14 32 32 H 1.08000 * 120.01659 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4917 -4.9671 -0.0012 12 8 0.2790 -4.9672 -0.0065 13 7 2.1657 -6.1344 -0.0018 14 7 1.4651 -7.3477 -0.0018 15 6 2.1642 -8.5584 -0.0030 16 6 3.5527 -8.5591 -0.0099 17 6 4.2433 -9.7579 -0.0063 18 9 5.5943 -9.7589 -0.0078 19 6 3.5496 -10.9580 -0.0064 20 9 4.2251 -12.1280 -0.0085 21 6 2.1635 -10.9587 -0.0049 22 9 1.4889 -12.1293 -0.0055 23 6 1.4705 -9.7613 -0.0028 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 3.1357 -6.1344 -0.0015 30 1 0.4951 -7.3477 -0.0018 31 1 4.0935 -7.6243 -0.0139 32 1 0.3905 -9.7621 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812525948.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:58 Heat of formation + Delta-G solvation = -134.849776 kcal Electronic energy + Delta-G solvation = -21291.500353 eV Core-core repulsion = 17224.004079 eV Total energy + Delta-G solvation = -4067.496274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.74157 -50.25851 -49.43205 -41.23639 -40.00531 -36.90622 -35.55560 -33.54786 -32.54788 -31.61026 -29.41119 -27.47583 -24.80732 -24.05540 -23.30661 -21.72376 -19.95711 -19.35698 -18.77889 -18.68933 -18.08174 -17.78038 -17.70676 -16.75918 -16.67760 -16.53099 -16.45066 -16.21202 -15.96850 -15.92528 -15.35339 -15.13323 -14.79852 -14.24554 -13.96642 -13.79086 -13.76849 -13.24196 -12.84967 -12.70713 -12.44287 -12.25953 -11.91442 -11.64784 -11.28336 -11.02279 -10.56151 -10.43153 -10.10385 -8.54158 -8.16716 -6.29519 -0.31893 -0.22398 0.71803 1.45502 1.45877 1.54441 1.58804 2.11557 2.34085 2.44367 2.91251 3.14256 3.17789 3.20655 3.42262 3.71315 3.83317 4.13744 4.43417 4.48676 4.55208 4.57011 4.67710 4.82874 5.04918 5.33281 5.53668 5.63068 5.65505 5.87606 6.13746 6.20409 6.51218 6.90002 7.25418 7.41037 8.95885 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.036732 B = 0.002655 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.098512 B =10545.305412 C =11286.954585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.251 1.251 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.539 4.539 8 H 0.079 0.921 9 C 0.040 3.960 10 C -0.109 4.109 11 C 0.518 3.482 12 O -0.578 6.578 13 N -0.516 5.516 14 N -0.526 5.526 15 C 0.273 3.727 16 C -0.216 4.216 17 C 0.154 3.846 18 F -0.122 7.122 19 C -0.049 4.049 20 F -0.137 7.137 21 C 0.153 3.847 22 F -0.122 7.122 23 C -0.199 4.199 24 H 0.262 0.738 25 H -0.014 1.014 26 H -0.014 1.014 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.439 0.561 30 H 0.440 0.560 31 H 0.169 0.831 32 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.301 -21.017 0.004 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.794 3.206 4 H -0.175 1.175 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.577 4.577 8 H 0.097 0.903 9 C 0.002 3.998 10 C -0.150 4.150 11 C 0.306 3.694 12 O -0.455 6.455 13 N -0.266 5.266 14 N -0.249 5.249 15 C 0.165 3.835 16 C -0.240 4.240 17 C 0.132 3.868 18 F -0.100 7.100 19 C -0.072 4.072 20 F -0.116 7.116 21 C 0.131 3.869 22 F -0.101 7.101 23 C -0.224 4.224 24 H 0.070 0.930 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.284 0.716 30 H 0.285 0.715 31 H 0.186 0.814 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.440 -20.775 0.001 22.424 hybrid contribution 0.141 0.343 0.003 0.371 sum 8.580 -20.432 0.004 22.161 Atomic orbital electron populations 1.70165 1.08225 1.27664 1.51700 1.26074 0.95655 1.03796 0.94856 0.85336 0.79490 0.78471 0.77330 1.17464 1.20968 1.20958 1.21748 0.94170 0.91453 1.50325 0.90260 1.18730 0.93777 0.92145 0.95160 1.21638 0.99368 0.87872 1.06073 1.21695 0.88273 0.84823 0.74577 1.90705 1.16233 1.87494 1.51077 1.45093 1.08887 0.95732 1.76932 1.43492 1.07257 0.93864 1.80267 1.16981 0.90351 0.83975 0.92164 1.20438 0.92467 0.98085 1.13000 1.16861 0.77191 0.91972 1.00745 1.91561 1.27855 1.97195 1.93436 1.17447 0.89251 0.81597 1.18946 1.91490 1.79825 1.45123 1.95130 1.16813 0.86852 0.82204 1.01017 1.91561 1.79628 1.45390 1.93478 1.20386 1.02654 0.87523 1.11819 0.92956 0.99531 0.99548 0.86591 0.86589 0.71574 0.71536 0.81355 0.80639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.29 21.45 0.28 -56.73 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.54 -28.45 9.11 25.60 0.23 -28.21 16 8 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 9 C 0.04 2.00 4.26 29.85 0.13 2.13 16 10 C -0.11 -3.59 5.64 29.85 0.17 -3.42 16 11 C 0.52 16.18 7.95 87.65 0.70 16.87 16 12 O -0.58 -23.96 15.82 -3.01 -0.05 -24.01 16 13 N -0.52 -10.46 6.22 -173.53 -1.08 -11.54 16 14 N -0.53 -9.62 6.46 -51.35 -0.33 -9.96 16 15 C 0.27 4.06 6.72 38.17 0.26 4.32 16 16 C -0.22 -3.01 9.46 22.45 0.21 -2.80 16 17 C 0.15 2.64 7.30 22.39 0.16 2.81 16 18 F -0.12 -2.31 17.18 44.97 0.77 -1.54 16 19 C -0.05 -0.95 7.31 22.45 0.16 -0.78 16 20 F -0.14 -3.11 17.09 44.97 0.77 -2.34 16 21 C 0.15 2.61 7.30 22.39 0.16 2.78 16 22 F -0.12 -2.31 17.18 44.97 0.77 -1.54 16 23 C -0.20 -2.75 9.87 22.44 0.22 -2.53 16 24 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 25 H -0.01 -0.79 8.10 -2.39 -0.02 -0.81 16 26 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 27 H 0.12 3.20 8.14 -2.38 -0.02 3.18 16 28 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 29 H 0.44 5.63 6.60 -213.32 -1.41 4.22 16 30 H 0.44 8.53 8.01 -213.32 -1.71 6.82 16 31 H 0.17 1.59 6.20 -2.91 -0.02 1.58 16 32 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -71.70 301.86 4.13 -67.57 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -1.91 Total: 4.46 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 2.87 Total: -8.73 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -1.13 Total: -78.23 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 9 Polarization: -7.73 SS G_CDS: 2.31 Total: -5.42 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -71.70 4.13 -67.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812525948.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.277 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds