Wall clock time and date at job start Tue Mar 31 2020 06:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48496 * 109.46898 * 269.99404 * 3 2 1 5 5 H 1.48499 * 109.47650 * 29.99464 * 3 2 1 6 6 H 1.48507 * 109.47002 * 149.99577 * 3 2 1 7 7 C 1.37874 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00051 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46972 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99842 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00270 * 179.97438 * 11 10 9 14 14 N 1.40101 * 120.00603 * 180.02562 * 13 11 10 15 15 C 1.34520 * 124.45490 * 285.02792 * 14 13 11 16 16 O 1.21448 * 125.71613 * 0.02562 * 15 14 13 17 17 C 1.47822 * 108.57877 * 179.97438 * 15 14 13 18 18 C 1.38564 * 134.29562 * 180.02562 * 17 15 14 19 19 C 1.38613 * 119.71575 * 180.24850 * 18 17 15 20 20 C 1.38222 * 120.45729 * 359.43921 * 19 18 17 21 21 C 1.38615 * 120.46479 * 0.56240 * 20 19 18 22 22 C 1.38569 * 119.71712 * 359.71990 * 21 20 19 23 23 C 1.34520 * 124.46159 * 104.99506 * 14 13 11 24 24 O 1.21446 * 125.71184 * 0.05211 * 23 14 13 25 25 H 0.97007 * 119.99813 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47257 * 59.99556 * 9 7 2 27 27 H 1.08999 * 109.46457 * 299.99693 * 9 7 2 28 28 H 1.08997 * 109.47234 * 59.99649 * 10 9 7 29 29 H 1.08999 * 109.47055 * 299.99115 * 10 9 7 30 30 H 0.97000 * 119.99731 * 0.02562 * 13 11 10 31 31 H 1.08002 * 120.13758 * 359.96600 * 18 17 15 32 32 H 1.07998 * 119.76643 * 179.69270 * 19 18 17 33 33 H 1.08001 * 119.76868 * 180.28553 * 20 19 18 34 34 H 1.07995 * 120.14109 * 179.70424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0009 12 8 6.1349 -1.5862 0.0015 13 7 6.2025 -3.8037 0.0014 14 7 7.6035 -3.8038 0.0018 15 6 8.3649 -3.5164 -1.0692 16 8 7.9534 -3.2199 -2.1727 17 6 9.7866 -3.6207 -0.6780 18 6 10.9889 -3.4415 -1.3430 19 6 12.1835 -3.6282 -0.6653 20 6 12.1831 -3.9804 0.6713 21 6 10.9881 -4.1631 1.3496 22 6 9.7861 -3.9855 0.6835 23 6 8.3643 -4.0907 1.0735 24 8 7.9519 -4.3869 2.1768 25 1 -0.4850 0.8401 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8751 -0.6805 -0.8889 28 1 3.6585 -3.1502 -0.8892 29 1 3.6579 -3.1505 0.8908 30 1 5.7174 -4.6437 0.0013 31 1 10.9951 -3.1619 -2.3862 32 1 13.1211 -3.4936 -1.1841 33 1 13.1204 -4.1186 1.1897 34 1 10.9939 -4.4429 2.3926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812823937.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:22 Heat of formation + Delta-G solvation = -17.591187 kcal Electronic energy + Delta-G solvation = -21678.292221 eV Core-core repulsion = 18157.737401 eV Total energy + Delta-G solvation = -3520.554820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.58068 -39.56387 -38.86056 -38.48015 -36.18104 -33.99146 -33.58684 -31.62412 -31.51786 -30.30438 -26.42862 -25.48163 -24.21501 -22.58804 -21.85884 -20.43694 -20.14276 -18.42716 -18.09164 -17.56362 -17.08841 -16.58617 -15.81625 -15.64685 -15.41186 -15.03950 -14.84646 -14.49045 -14.21410 -14.14089 -13.76264 -13.21111 -12.81327 -12.79151 -12.61273 -12.23988 -11.52442 -11.05651 -11.03664 -10.92586 -10.55726 -10.28909 -10.13966 -9.85226 -9.74512 -9.70763 -9.60161 -9.41651 -9.24098 -8.53622 -6.05798 -4.05441 -0.34095 0.49227 1.15642 1.64532 2.64341 2.75955 3.13253 3.29816 3.37014 3.43525 3.53955 3.57012 3.96420 4.11991 4.38381 4.48669 4.57495 4.72130 4.89250 5.09957 5.28079 5.29446 5.43866 5.58827 5.68855 5.89708 5.93968 6.05621 6.07480 6.23620 6.51358 6.91412 7.20440 7.27232 7.33939 7.44809 7.72922 8.34064 8.48202 8.96100 9.56476 11.06736 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.030543 B = 0.003498 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.528376 B = 8002.590136 C = 8214.471061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.075 0.925 9 C 0.001 3.999 10 C -0.107 4.107 11 C 0.517 3.483 12 O -0.515 6.515 13 N -0.521 5.521 14 N -0.379 5.379 15 C 0.575 3.425 16 O -0.443 6.443 17 C -0.126 4.126 18 C -0.043 4.043 19 C -0.094 4.094 20 C -0.096 4.096 21 C -0.042 4.042 22 C -0.130 4.130 23 C 0.575 3.425 24 O -0.452 6.452 25 H 0.264 0.736 26 H 0.026 0.974 27 H 0.022 0.978 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.426 0.574 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.160 -12.418 -0.078 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.037 4.037 10 C -0.148 4.148 11 C 0.306 3.694 12 O -0.385 6.385 13 N -0.274 5.274 14 N -0.209 5.209 15 C 0.363 3.637 16 O -0.311 6.311 17 C -0.131 4.131 18 C -0.062 4.062 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.061 4.061 22 C -0.135 4.135 23 C 0.363 3.637 24 O -0.321 6.321 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.040 0.960 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.268 0.732 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 26.860 -11.502 -0.083 29.219 hybrid contribution 0.007 0.465 -0.007 0.465 sum 26.867 -11.037 -0.090 29.046 Atomic orbital electron populations 1.69906 1.06261 1.27062 1.50720 1.24945 0.94715 0.99201 0.94210 0.86811 0.80593 0.83433 0.78826 1.20137 1.21317 1.18607 1.21032 0.88847 0.94757 1.51787 0.90666 1.19436 0.96776 0.89444 0.98028 1.21744 0.84368 1.04276 1.04453 1.22506 0.91648 0.81844 0.73437 1.90705 1.69882 1.30894 1.47027 1.45823 0.89773 1.11439 1.80328 1.45349 0.98074 1.65068 1.12405 1.18564 0.86040 0.75709 0.83399 1.90836 1.78752 1.40501 1.20979 1.20394 0.93220 1.04317 0.95146 1.20835 0.89448 0.95111 1.00808 1.21481 0.98069 0.97065 0.94618 1.21475 0.98066 0.97288 0.94588 1.20819 0.89440 0.95256 1.00613 1.20380 0.93191 1.04770 0.95117 1.18617 0.86151 0.75647 0.83278 1.90826 1.78865 1.41883 1.20478 0.92615 0.95571 0.95957 0.88456 0.88415 0.73168 0.83743 0.83847 0.83858 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 22.70 27.47 -169.99 -4.67 18.03 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 7 C -0.53 -14.97 9.66 -34.44 -0.33 -15.31 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.11 -2.05 5.64 -27.88 -0.16 -2.21 16 11 C 0.52 9.97 7.89 -10.99 -0.09 9.88 16 12 O -0.51 -12.07 16.20 5.56 0.09 -11.98 16 13 N -0.52 -8.06 6.07 31.22 0.19 -7.87 16 14 N -0.38 -5.79 2.95 -13.25 -0.04 -5.83 16 15 C 0.57 8.59 7.98 -12.46 -0.10 8.49 16 16 O -0.44 -7.84 17.99 5.41 0.10 -7.75 16 17 C -0.13 -1.38 6.40 -104.83 -0.67 -2.05 16 18 C -0.04 -0.32 10.09 -39.32 -0.40 -0.72 16 19 C -0.09 -0.44 10.04 -39.45 -0.40 -0.83 16 20 C -0.10 -0.43 10.03 -39.45 -0.40 -0.83 16 21 C -0.04 -0.30 10.09 -39.32 -0.40 -0.70 16 22 C -0.13 -1.38 6.41 -104.83 -0.67 -2.05 16 23 C 0.57 8.09 8.19 -12.46 -0.10 7.98 16 24 O -0.45 -7.25 17.99 5.41 0.10 -7.15 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.03 0.68 7.16 -51.93 -0.37 0.31 16 27 H 0.02 0.57 7.53 -51.93 -0.39 0.18 16 28 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 30 H 0.43 4.88 8.83 -182.60 -1.61 3.27 16 31 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.14 0.23 8.06 -52.49 -0.42 -0.20 16 33 H 0.14 0.20 8.06 -52.49 -0.42 -0.22 16 34 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -38.35 312.93 -7.14 -45.49 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -4.50 Total: -4.15 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -3.90 Total: 3.62 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.92 Total: -40.83 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: 0.28 Total: -26.87 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.67 Total: 18.03 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -38.35 -7.14 -45.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812823937.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.899 kcal (2) G-P(sol) polarization free energy of solvation -38.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds