Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99844 * 2 1 4 4 H 1.48496 * 109.46898 * 269.99404 * 3 2 1 5 5 H 1.48499 * 109.47650 * 29.99464 * 3 2 1 6 6 H 1.48507 * 109.47002 * 149.99577 * 3 2 1 7 7 C 1.37874 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99943 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00051 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46972 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99842 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00270 * 179.97438 * 11 10 9 14 14 N 1.40101 * 120.00603 * 180.02562 * 13 11 10 15 15 C 1.34520 * 124.45490 * 285.02792 * 14 13 11 16 16 O 1.21448 * 125.71613 * 0.02562 * 15 14 13 17 17 C 1.47822 * 108.57877 * 179.97438 * 15 14 13 18 18 C 1.38564 * 134.29562 * 180.02562 * 17 15 14 19 19 C 1.38613 * 119.71575 * 180.24850 * 18 17 15 20 20 C 1.38222 * 120.45729 * 359.43921 * 19 18 17 21 21 C 1.38615 * 120.46479 * 0.56240 * 20 19 18 22 22 C 1.38569 * 119.71712 * 359.71990 * 21 20 19 23 23 C 1.34520 * 124.46159 * 104.99506 * 14 13 11 24 24 O 1.21446 * 125.71184 * 0.05211 * 23 14 13 25 25 H 0.97007 * 119.99813 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47257 * 59.99556 * 9 7 2 27 27 H 1.08999 * 109.46457 * 299.99693 * 9 7 2 28 28 H 1.08997 * 109.47234 * 59.99649 * 10 9 7 29 29 H 1.08999 * 109.47055 * 299.99115 * 10 9 7 30 30 H 0.97000 * 119.99731 * 0.02562 * 13 11 10 31 31 H 1.08002 * 120.13758 * 359.96600 * 18 17 15 32 32 H 1.07998 * 119.76643 * 179.69270 * 19 18 17 33 33 H 1.08001 * 119.76868 * 180.28553 * 20 19 18 34 34 H 1.07995 * 120.14109 * 179.70424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0009 12 8 6.1349 -1.5862 0.0015 13 7 6.2025 -3.8037 0.0014 14 7 7.6035 -3.8038 0.0018 15 6 8.3649 -3.5164 -1.0692 16 8 7.9534 -3.2199 -2.1727 17 6 9.7866 -3.6207 -0.6780 18 6 10.9889 -3.4415 -1.3430 19 6 12.1835 -3.6282 -0.6653 20 6 12.1831 -3.9804 0.6713 21 6 10.9881 -4.1631 1.3496 22 6 9.7861 -3.9855 0.6835 23 6 8.3643 -4.0907 1.0735 24 8 7.9519 -4.3869 2.1768 25 1 -0.4850 0.8401 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8751 -0.6805 -0.8889 28 1 3.6585 -3.1502 -0.8892 29 1 3.6579 -3.1505 0.8908 30 1 5.7174 -4.6437 0.0013 31 1 10.9951 -3.1619 -2.3862 32 1 13.1211 -3.4936 -1.1841 33 1 13.1204 -4.1186 1.1897 34 1 10.9939 -4.4429 2.3926 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812823937.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = -46.138978 kcal Electronic energy + Delta-G solvation = -21679.530146 eV Core-core repulsion = 18157.737401 eV Total energy + Delta-G solvation = -3521.792745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.59732 -40.88634 -40.00739 -39.38873 -37.40732 -35.65300 -35.14642 -33.43871 -32.18533 -31.36090 -28.23139 -26.42322 -25.26098 -23.47238 -23.30378 -21.83654 -21.39857 -19.67432 -19.34779 -18.92154 -18.27506 -17.90129 -17.19362 -16.75303 -16.53427 -16.28877 -16.04433 -15.52684 -15.45084 -15.39364 -15.10312 -14.73948 -14.57827 -13.81398 -13.53122 -13.29385 -12.98623 -12.95917 -12.27739 -12.19088 -12.06927 -11.96700 -11.83910 -11.74476 -11.47091 -11.14989 -10.84248 -10.78810 -10.27250 -10.26992 -8.34769 -6.38026 -1.15496 -0.07579 0.04050 0.85268 1.21183 1.30313 1.32256 1.46645 1.62429 2.31551 2.37069 2.47587 2.57476 3.00700 3.00945 3.50206 3.62811 4.03384 4.14854 4.17934 4.22130 4.35145 4.40975 4.76447 4.81682 4.82072 4.86490 5.18848 5.19545 5.24874 5.26033 5.32965 5.54055 5.66954 5.86386 5.89736 6.18446 6.23989 6.68118 6.97122 7.27226 8.80637 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.030543 B = 0.003498 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.528376 B = 8002.590136 C = 8214.471061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.017 3.983 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.004 3.996 10 C -0.100 4.100 11 C 0.522 3.478 12 O -0.563 6.563 13 N -0.512 5.512 14 N -0.391 5.391 15 C 0.568 3.432 16 O -0.487 6.487 17 C -0.151 4.151 18 C -0.040 4.040 19 C -0.075 4.075 20 C -0.075 4.075 21 C -0.036 4.036 22 C -0.150 4.150 23 C 0.571 3.429 24 O -0.483 6.483 25 H 0.268 0.732 26 H 0.012 0.988 27 H 0.010 0.990 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.444 0.556 31 H 0.156 0.844 32 H 0.188 0.812 33 H 0.189 0.811 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.384 -13.009 0.170 33.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.181 4.181 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.034 4.034 10 C -0.141 4.141 11 C 0.311 3.689 12 O -0.438 6.438 13 N -0.264 5.264 14 N -0.221 5.221 15 C 0.359 3.641 16 O -0.358 6.358 17 C -0.156 4.156 18 C -0.059 4.059 19 C -0.093 4.093 20 C -0.093 4.093 21 C -0.055 4.055 22 C -0.155 4.155 23 C 0.362 3.638 24 O -0.354 6.354 25 H 0.077 0.923 26 H 0.030 0.970 27 H 0.028 0.972 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.290 0.710 31 H 0.174 0.826 32 H 0.205 0.795 33 H 0.206 0.794 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 31.095 -12.158 0.171 33.388 hybrid contribution -1.151 0.533 -0.073 1.271 sum 29.944 -11.626 0.098 32.121 Atomic orbital electron populations 1.70009 1.07648 1.28158 1.52216 1.25742 0.95480 1.02665 0.94239 0.85885 0.79182 0.79853 0.79132 1.19412 1.20058 1.18927 1.21333 0.90652 0.94057 1.50590 0.92471 1.19266 0.94505 0.92954 0.96650 1.21557 0.84759 1.01107 1.06707 1.22293 0.91701 0.82049 0.72832 1.90678 1.70812 1.32742 1.49587 1.45391 0.91084 1.11207 1.78717 1.45750 0.97356 1.65457 1.13531 1.19359 0.87883 0.74256 0.82608 1.90792 1.79768 1.42851 1.22377 1.20241 0.91751 1.07876 0.95713 1.21219 0.89111 0.94015 1.01565 1.22023 0.98315 0.94219 0.94696 1.22040 0.98526 0.94241 0.94478 1.21237 0.88861 0.93860 1.01520 1.20243 0.92000 1.07974 0.95314 1.19279 0.87682 0.74400 0.82431 1.90793 1.79667 1.43602 1.21341 0.92252 0.96961 0.97209 0.86234 0.86130 0.71024 0.82647 0.79527 0.79378 0.82110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.10 13.96 21.45 0.30 -58.81 16 2 C 0.02 1.01 5.47 84.65 0.46 1.48 16 3 Si 0.93 47.47 27.47 68.60 1.88 49.35 16 4 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.26 -13.48 6.54 99.48 0.65 -12.83 16 7 C -0.53 -30.58 9.66 25.60 0.25 -30.34 16 8 H 0.06 3.44 7.99 -2.91 -0.02 3.41 16 9 C 0.00 0.23 3.33 29.85 0.10 0.32 16 10 C -0.10 -3.87 5.64 29.85 0.17 -3.70 16 11 C 0.52 20.59 7.89 87.66 0.69 21.29 16 12 O -0.56 -27.32 16.20 -3.03 -0.05 -27.37 16 13 N -0.51 -16.24 6.07 -173.53 -1.05 -17.29 16 14 N -0.39 -12.33 2.95 -432.76 -1.28 -13.61 16 15 C 0.57 17.57 7.98 86.82 0.69 18.27 16 16 O -0.49 -18.06 17.99 -3.55 -0.06 -18.13 16 17 C -0.15 -3.19 6.40 -20.00 -0.13 -3.32 16 18 C -0.04 -0.49 10.09 22.44 0.23 -0.26 16 19 C -0.07 -0.29 10.04 22.36 0.22 -0.06 16 20 C -0.08 -0.25 10.03 22.36 0.22 -0.02 16 21 C -0.04 -0.38 10.09 22.44 0.23 -0.16 16 22 C -0.15 -3.03 6.41 -20.00 -0.13 -3.16 16 23 C 0.57 16.38 8.19 86.82 0.71 17.09 16 24 O -0.48 -15.83 17.99 -3.55 -0.06 -15.90 16 25 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 26 H 0.01 0.64 7.16 -2.38 -0.02 0.62 16 27 H 0.01 0.51 7.53 -2.39 -0.02 0.49 16 28 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 29 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 30 H 0.44 10.32 8.83 -213.32 -1.88 8.44 16 31 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.19 -0.78 8.06 -2.91 -0.02 -0.80 16 33 H 0.19 -0.92 8.06 -2.91 -0.02 -0.94 16 34 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -88.06 312.93 2.61 -85.45 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -0.78 Total: -1.12 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 3.72 Total: 17.42 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -2.03 Total: -89.71 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -0.18 Total: -61.39 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.88 Total: 49.35 kcal Total: -88.06 2.61 -85.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812823937.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.311 kcal (2) G-P(sol) polarization free energy of solvation -88.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds