Wall clock time and date at job start Tue Mar 31 2020 05:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99550 * 2 1 4 4 H 1.48501 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47219 * 299.99495 * 3 2 1 6 6 H 1.48506 * 109.47534 * 59.99545 * 3 2 1 7 7 C 1.37873 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47338 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47357 * 179.97438 * 10 9 7 12 12 O 1.20824 * 119.99816 * 0.02562 * 11 10 9 13 13 O 1.34288 * 120.00177 * 179.97438 * 11 10 9 14 14 C 1.35804 * 117.00186 * 185.77735 * 13 11 10 15 15 C 1.39347 * 119.72644 * 69.32868 * 14 13 11 16 16 C 1.36474 * 120.42353 * 180.30700 * 15 14 13 17 17 C 1.39955 * 119.79935 * 359.67228 * 16 15 14 18 18 C 1.46469 * 120.98158 * 180.02562 * 17 16 15 19 19 C 1.35821 * 118.19034 * 179.97438 * 18 17 16 20 20 C 1.41033 * 119.82191 * 359.97438 * 19 18 17 21 21 O 1.21789 * 119.15995 * 180.02562 * 20 19 18 22 22 O 1.34224 * 121.68547 * 0.02562 * 20 19 18 23 23 C 1.35020 * 121.46686 * 359.97438 * 22 20 19 24 24 C 1.38492 * 119.72242 * 249.00552 * 14 13 11 25 25 H 0.96998 * 120.00631 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47270 * 59.99661 * 9 7 2 27 27 H 1.09003 * 109.47082 * 299.99666 * 9 7 2 28 28 H 1.09002 * 109.46957 * 59.99788 * 10 9 7 29 29 H 1.09003 * 109.47021 * 300.00021 * 10 9 7 30 30 H 1.07994 * 119.78682 * 359.96504 * 15 14 13 31 31 H 1.08005 * 120.10209 * 179.69622 * 16 15 14 32 32 H 1.08000 * 120.90661 * 359.95624 * 18 17 16 33 33 H 1.08004 * 120.08820 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.11128 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4921 -4.9671 0.0012 12 8 0.2838 -4.9672 0.0011 13 8 2.1635 -6.1301 0.0008 14 6 1.4292 -7.2660 -0.1204 15 6 0.7960 -7.5539 -1.3279 16 6 0.0495 -8.6883 -1.4634 17 6 -0.0756 -9.5716 -0.3851 18 6 -0.8699 -10.7967 -0.5022 19 6 -0.9523 -11.6137 0.5796 20 6 -0.2815 -11.2693 1.7714 21 8 -0.3633 -12.0110 2.7340 22 8 0.4448 -10.1451 1.8720 23 6 0.5675 -9.2900 0.8343 24 6 1.3214 -8.1319 0.9550 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8721 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 0.8922 -6.8723 -2.1600 31 1 -0.4431 -8.9039 -2.4002 32 1 -1.3764 -11.0434 -1.4236 33 1 -1.5301 -12.5247 0.5273 34 1 1.8198 -7.9046 1.8858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812828035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:25 Heat of formation + Delta-G solvation = -110.004440 kcal Electronic energy + Delta-G solvation = -21138.643246 eV Core-core repulsion = 17581.788335 eV Total energy + Delta-G solvation = -3556.854911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.20554 -41.14514 -38.90641 -37.58205 -36.65822 -34.59119 -33.72775 -31.39744 -31.22259 -29.74541 -26.45759 -24.85194 -24.58316 -23.39289 -22.61607 -20.60875 -19.39666 -18.46780 -17.91920 -17.53230 -17.03284 -16.81996 -16.30439 -15.84303 -15.65799 -14.88666 -14.60857 -14.51274 -14.25437 -14.00676 -13.74718 -13.18108 -12.98849 -12.50448 -12.38502 -12.32115 -12.06714 -11.44681 -11.17788 -11.04945 -10.75216 -10.69524 -10.62453 -10.24519 -10.20431 -9.76456 -9.28333 -9.19996 -8.64592 -8.47124 -6.10580 -4.16189 -0.21566 0.67805 1.11877 1.98755 2.34197 2.50421 2.93716 3.25465 3.33308 3.36238 3.42515 3.77471 3.99138 4.00845 4.36397 4.51224 4.55942 4.77008 4.92484 5.15660 5.25216 5.25362 5.32650 5.47061 5.62269 5.79293 5.87519 5.93582 5.95578 6.07935 6.52998 6.66251 6.85291 7.16854 7.54498 7.58417 7.86555 8.00748 8.23177 8.90678 9.48796 11.00306 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.040315 B = 0.002747 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.365214 B =10191.554532 C =10343.309457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.032 3.968 10 C -0.099 4.099 11 C 0.458 3.542 12 O -0.480 6.480 13 O -0.303 6.303 14 C 0.160 3.840 15 C -0.148 4.148 16 C -0.035 4.035 17 C -0.171 4.171 18 C 0.010 3.990 19 C -0.254 4.254 20 C 0.509 3.491 21 O -0.467 6.467 22 O -0.268 6.268 23 C 0.163 3.837 24 C -0.143 4.143 25 H 0.262 0.738 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 -20.534 -4.724 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.568 4.568 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.137 4.137 11 C 0.302 3.698 12 O -0.362 6.362 13 O -0.220 6.220 14 C 0.117 3.883 15 C -0.167 4.167 16 C -0.053 4.053 17 C -0.172 4.172 18 C -0.008 4.008 19 C -0.273 4.273 20 C 0.358 3.642 21 O -0.356 6.356 22 O -0.180 6.180 23 C 0.118 3.882 24 C -0.162 4.162 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.182 0.818 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.501 -20.729 -4.055 21.128 hybrid contribution 0.228 0.810 -0.127 0.851 sum 0.729 -19.919 -4.182 20.366 Atomic orbital electron populations 1.69993 1.06117 1.26827 1.49709 1.25021 0.94869 0.99425 0.94971 0.86470 0.80017 0.83424 0.77688 1.19599 1.20923 1.20911 1.21145 0.93147 0.90432 1.52109 0.92123 1.19072 0.93190 0.89167 0.99087 1.21893 1.00856 0.86303 1.04630 1.25435 0.88295 0.84480 0.71620 1.90702 1.15548 1.86493 1.43466 1.84735 1.39927 1.13342 1.83978 1.18431 0.91570 0.86156 0.92096 1.21173 0.98757 0.98951 0.97777 1.20717 0.95404 0.91742 0.97443 1.19160 1.04758 0.98716 0.94598 1.22846 0.90022 0.89314 0.98642 1.22565 1.06894 1.04625 0.93263 1.19250 0.77275 0.78104 0.89554 1.90987 1.59377 1.44496 1.40696 1.83558 1.62826 1.31675 1.39916 1.18619 0.95684 0.89282 0.84582 1.20345 1.02249 0.93412 1.00174 0.92791 0.95456 0.95412 0.88327 0.88303 0.83976 0.83521 0.82708 0.81841 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.53 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.79 4.26 -27.89 -0.12 0.67 16 10 C -0.10 -1.83 5.75 -27.89 -0.16 -1.99 16 11 C 0.46 8.11 7.73 36.00 0.28 8.39 16 12 O -0.48 -9.99 15.40 -18.75 -0.29 -10.28 16 13 O -0.30 -4.52 10.02 -23.31 -0.23 -4.75 16 14 C 0.16 2.15 5.26 -39.08 -0.21 1.94 16 15 C -0.15 -1.67 9.25 -39.81 -0.37 -2.04 16 16 C -0.04 -0.31 9.78 -39.57 -0.39 -0.69 16 17 C -0.17 -1.64 5.87 -105.01 -0.62 -2.26 16 18 C 0.01 0.07 10.12 -37.13 -0.38 -0.31 16 19 C -0.25 -2.13 9.93 -39.39 -0.39 -2.52 16 20 C 0.51 6.35 7.89 31.79 0.25 6.61 16 21 O -0.47 -7.24 17.91 -19.59 -0.35 -7.59 16 22 O -0.27 -3.52 9.82 -20.79 -0.20 -3.72 16 23 C 0.16 1.95 6.76 -38.48 -0.26 1.69 16 24 C -0.14 -1.80 9.94 -39.31 -0.39 -2.19 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 28 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.15 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.16 0.44 8.06 -52.49 -0.42 0.02 16 33 H 0.16 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -33.21 313.23 -7.14 -40.35 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -3.34 Total: -3.52 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.16 Total: -5.58 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.36 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.08 Total: -26.34 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.21 -7.14 -40.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812828035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.651 kcal (2) G-P(sol) polarization free energy of solvation -33.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds