Wall clock time and date at job start Tue Mar 31 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99550 * 2 1 4 4 H 1.48501 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47219 * 299.99495 * 3 2 1 6 6 H 1.48506 * 109.47534 * 59.99545 * 3 2 1 7 7 C 1.37873 * 120.00197 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00175 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47338 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47357 * 179.97438 * 10 9 7 12 12 O 1.20824 * 119.99816 * 0.02562 * 11 10 9 13 13 O 1.34288 * 120.00177 * 179.97438 * 11 10 9 14 14 C 1.35804 * 117.00186 * 185.77735 * 13 11 10 15 15 C 1.39347 * 119.72644 * 69.32868 * 14 13 11 16 16 C 1.36474 * 120.42353 * 180.30700 * 15 14 13 17 17 C 1.39955 * 119.79935 * 359.67228 * 16 15 14 18 18 C 1.46469 * 120.98158 * 180.02562 * 17 16 15 19 19 C 1.35821 * 118.19034 * 179.97438 * 18 17 16 20 20 C 1.41033 * 119.82191 * 359.97438 * 19 18 17 21 21 O 1.21789 * 119.15995 * 180.02562 * 20 19 18 22 22 O 1.34224 * 121.68547 * 0.02562 * 20 19 18 23 23 C 1.35020 * 121.46686 * 359.97438 * 22 20 19 24 24 C 1.38492 * 119.72242 * 249.00552 * 14 13 11 25 25 H 0.96998 * 120.00631 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47270 * 59.99661 * 9 7 2 27 27 H 1.09003 * 109.47082 * 299.99666 * 9 7 2 28 28 H 1.09002 * 109.46957 * 59.99788 * 10 9 7 29 29 H 1.09003 * 109.47021 * 300.00021 * 10 9 7 30 30 H 1.07994 * 119.78682 * 359.96504 * 15 14 13 31 31 H 1.08005 * 120.10209 * 179.69622 * 16 15 14 32 32 H 1.08000 * 120.90661 * 359.95624 * 18 17 16 33 33 H 1.08004 * 120.08820 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.11128 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4921 -4.9671 0.0012 12 8 0.2838 -4.9672 0.0011 13 8 2.1635 -6.1301 0.0008 14 6 1.4292 -7.2660 -0.1204 15 6 0.7960 -7.5539 -1.3279 16 6 0.0495 -8.6883 -1.4634 17 6 -0.0756 -9.5716 -0.3851 18 6 -0.8699 -10.7967 -0.5022 19 6 -0.9523 -11.6137 0.5796 20 6 -0.2815 -11.2693 1.7714 21 8 -0.3633 -12.0110 2.7340 22 8 0.4448 -10.1451 1.8720 23 6 0.5675 -9.2900 0.8343 24 6 1.3214 -8.1319 0.9550 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.8721 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 0.8922 -6.8723 -2.1600 31 1 -0.4431 -8.9039 -2.4002 32 1 -1.3764 -11.0434 -1.4236 33 1 -1.5301 -12.5247 0.5273 34 1 1.8198 -7.9046 1.8858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812828035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:24 Heat of formation + Delta-G solvation = -128.536704 kcal Electronic energy + Delta-G solvation = -21139.446865 eV Core-core repulsion = 17581.788335 eV Total energy + Delta-G solvation = -3557.658530 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.12766 -42.36688 -39.93953 -38.73248 -37.77363 -35.67847 -35.36445 -33.19825 -32.12349 -30.70375 -28.19449 -25.95105 -25.45074 -24.51216 -23.87448 -22.11367 -20.53471 -19.30460 -19.08001 -18.79789 -18.27913 -17.99222 -17.50033 -17.43930 -16.50007 -16.46975 -16.03111 -15.37961 -15.08975 -14.96056 -14.82578 -14.51101 -14.34830 -14.20771 -13.46484 -13.29551 -13.19133 -13.03200 -12.86422 -12.49231 -12.25527 -12.02057 -11.83339 -11.72043 -11.52254 -11.43108 -11.27225 -10.58397 -10.06525 -9.52697 -8.20216 -6.33372 -1.01826 -0.19633 0.28068 0.98572 1.08569 1.44481 1.45036 1.49805 1.58632 1.89494 2.43049 2.54730 2.99032 3.14457 3.29775 3.34305 3.55560 3.75342 3.93962 4.01663 4.31463 4.42807 4.45185 4.50187 4.58601 4.62848 4.89169 4.96616 5.01397 5.04945 5.13855 5.43780 5.50210 5.54376 5.80510 5.96397 6.12485 6.27416 6.69115 6.85412 7.37154 8.92347 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.040315 B = 0.002747 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.365214 B =10191.554532 C =10343.309457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.037 3.963 10 C -0.090 4.090 11 C 0.469 3.531 12 O -0.518 6.518 13 O -0.293 6.293 14 C 0.125 3.875 15 C -0.157 4.157 16 C -0.015 4.015 17 C -0.167 4.167 18 C 0.041 3.959 19 C -0.261 4.261 20 C 0.499 3.501 21 O -0.514 6.514 22 O -0.290 6.290 23 C 0.141 3.859 24 C -0.155 4.155 25 H 0.263 0.737 26 H -0.004 1.004 27 H -0.010 1.010 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.198 0.802 32 H 0.212 0.788 33 H 0.191 0.809 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 -21.523 -7.020 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.000 4.000 10 C -0.127 4.127 11 C 0.314 3.686 12 O -0.404 6.404 13 O -0.209 6.209 14 C 0.083 3.917 15 C -0.175 4.175 16 C -0.032 4.032 17 C -0.168 4.168 18 C 0.023 3.977 19 C -0.280 4.280 20 C 0.351 3.649 21 O -0.406 6.406 22 O -0.202 6.202 23 C 0.097 3.903 24 C -0.173 4.173 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.008 0.992 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.167 0.833 31 H 0.215 0.785 32 H 0.229 0.771 33 H 0.208 0.792 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.045 -21.733 -6.364 22.670 hybrid contribution 0.059 1.015 0.571 1.167 sum 1.104 -20.718 -5.793 21.541 Atomic orbital electron populations 1.70151 1.08146 1.27851 1.51320 1.26052 0.95693 1.03740 0.94612 0.85305 0.79379 0.78304 0.77469 1.17666 1.20633 1.20919 1.21656 0.94179 0.91169 1.50927 0.90309 1.18836 0.93688 0.91719 0.95782 1.21617 0.99424 0.84715 1.06987 1.25089 0.87491 0.85318 0.70677 1.90684 1.17077 1.87234 1.45391 1.84671 1.39544 1.13172 1.83477 1.18719 0.93708 0.85705 0.93583 1.21427 0.98828 1.00266 0.97028 1.21236 0.93523 0.89730 0.98749 1.19590 1.03805 0.99880 0.93504 1.23344 0.87826 0.86605 0.99902 1.22698 1.07240 1.06240 0.91797 1.20021 0.76932 0.77317 0.90591 1.90954 1.61269 1.45837 1.42540 1.83474 1.63324 1.32306 1.41129 1.18821 0.96736 0.89198 0.85571 1.20376 1.02780 0.94084 1.00097 0.92783 0.98582 0.99167 0.86228 0.85552 0.83259 0.78529 0.77104 0.79156 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 2 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 3 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -28.85 9.11 25.60 0.23 -28.61 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.04 1.88 4.26 29.85 0.13 2.01 16 10 C -0.09 -3.30 5.75 29.85 0.17 -3.13 16 11 C 0.47 16.79 7.73 71.24 0.55 17.34 16 12 O -0.52 -22.27 15.40 21.97 0.34 -21.93 16 13 O -0.29 -8.73 10.02 5.65 0.06 -8.67 16 14 C 0.12 3.33 5.26 22.60 0.12 3.45 16 15 C -0.16 -3.26 9.25 22.12 0.20 -3.06 16 16 C -0.02 -0.20 9.78 22.27 0.22 0.02 16 17 C -0.17 -2.68 5.87 -20.11 -0.12 -2.79 16 18 C 0.04 0.36 10.12 23.85 0.24 0.60 16 19 C -0.26 -3.64 9.93 22.39 0.22 -3.42 16 20 C 0.50 12.44 7.89 68.51 0.54 12.98 16 21 O -0.51 -16.50 17.91 18.99 0.34 -16.16 16 22 O -0.29 -7.85 9.82 14.70 0.14 -7.70 16 23 C 0.14 3.33 6.76 22.99 0.16 3.48 16 24 C -0.15 -3.99 9.94 22.44 0.22 -3.77 16 25 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 26 H 0.00 -0.24 8.10 -2.39 -0.02 -0.26 16 27 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 28 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 29 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.20 0.68 8.06 -2.91 -0.02 0.65 16 32 H 0.21 -0.44 8.06 -2.91 -0.02 -0.46 16 33 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -77.70 313.23 7.67 -70.03 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: 1.13 Total: 0.72 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 3.35 Total: -4.61 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.28 Total: -56.12 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: 0.88 Total: -54.47 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -77.70 7.67 -70.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812828035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.507 kcal (2) G-P(sol) polarization free energy of solvation -77.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds