Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00240 * 2 1 4 4 H 1.48500 * 109.47093 * 239.99884 * 3 2 1 5 5 H 1.48497 * 109.46698 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47093 * 120.00248 * 3 2 1 7 7 C 1.37877 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00206 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47413 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47426 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99966 * 0.02562 * 11 10 9 13 13 O 1.34271 * 120.00470 * 180.02562 * 11 10 9 14 14 C 1.35860 * 117.00151 * 185.78061 * 13 11 10 15 15 C 1.38882 * 119.91723 * 68.99894 * 14 13 11 16 16 C 1.37825 * 120.08873 * 179.97438 * 15 14 13 17 17 C 1.39620 * 119.91281 * 359.97438 * 16 15 14 18 18 C 1.47772 * 120.08825 * 179.97438 * 17 16 15 19 19 N 1.31273 * 126.38417 * 0.02562 * 18 17 16 20 20 N 1.28666 * 109.25052 * 179.97438 * 19 18 17 21 21 C 1.30354 * 109.53628 * 0.02562 * 20 19 18 22 22 O 1.34456 * 107.63306 * 359.73512 * 21 20 19 23 23 C 1.39617 * 119.82400 * 0.02562 * 17 16 15 24 24 C 1.37826 * 119.91197 * 359.97438 * 23 17 16 25 25 H 0.97000 * 119.99758 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46743 * 59.99713 * 9 7 2 27 27 H 1.08995 * 109.47071 * 300.00052 * 9 7 2 28 28 H 1.09005 * 109.46934 * 59.99815 * 10 9 7 29 29 H 1.08997 * 109.47047 * 300.00686 * 10 9 7 30 30 H 1.08001 * 119.95294 * 0.25107 * 15 14 13 31 31 H 1.08005 * 120.04338 * 179.97438 * 16 15 14 32 32 H 1.07998 * 126.18854 * 180.02562 * 21 20 19 33 33 H 1.08005 * 120.04287 * 179.97438 * 23 17 16 34 34 H 1.08001 * 119.95481 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4917 -4.9672 0.0033 12 8 0.2835 -4.9672 0.0041 13 8 2.1630 -6.1301 0.0039 14 6 1.4282 -7.2665 -0.1164 15 6 0.7899 -7.5549 -1.3156 16 6 0.0440 -8.7070 -1.4417 17 6 -0.0689 -9.5850 -0.3620 18 6 -0.8681 -10.8211 -0.4928 19 7 -1.5212 -11.2168 -1.5605 20 7 -2.1025 -12.3373 -1.3112 21 6 -1.8463 -12.6979 -0.0851 22 8 -1.0578 -11.7553 0.4605 23 6 0.5743 -9.2915 0.8419 24 6 1.3183 -8.1373 0.9600 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 2.8726 -3.6040 0.8910 29 1 2.8712 -3.6048 -0.8890 30 1 0.8818 -6.8777 -2.1519 31 1 -0.4524 -8.9304 -2.3746 32 1 -2.1993 -13.5944 0.4029 33 1 0.4890 -9.9679 1.6795 34 1 1.8166 -7.9098 1.8908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812828723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = -15.278312 kcal Electronic energy + Delta-G solvation = -20840.369549 eV Core-core repulsion = 17319.915023 eV Total energy + Delta-G solvation = -3520.454526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.47598 -41.19975 -38.92223 -36.73084 -36.52064 -33.69878 -32.72574 -31.47263 -31.26122 -29.61140 -26.41648 -24.76912 -24.34086 -23.08620 -22.59900 -21.58330 -20.12614 -18.53397 -18.05020 -17.60891 -17.09204 -16.72819 -16.64173 -15.83699 -15.68287 -14.75802 -14.70933 -14.51476 -13.84835 -13.62645 -13.30714 -12.93466 -12.78232 -12.55551 -12.30969 -12.22604 -11.94535 -11.40860 -11.36568 -10.99939 -10.92623 -10.72299 -10.52096 -10.17167 -10.15338 -9.72061 -9.38209 -9.28054 -8.70067 -8.43796 -6.07568 -4.13299 0.05079 1.01133 1.25223 1.90989 2.10381 2.52163 2.87358 3.29232 3.34373 3.35886 3.49179 3.52401 4.09238 4.38741 4.49828 4.54619 4.73934 4.79824 4.93557 5.04368 5.17144 5.21122 5.27974 5.54521 5.64840 5.82842 5.95071 5.96842 6.04919 6.06851 6.26992 6.63155 6.76403 7.57551 7.62312 7.89729 7.90548 8.09226 8.27361 8.93213 9.51325 11.03272 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.046753 B = 0.002517 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.754532 B =11120.686811 C =11357.935247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.100 4.100 11 C 0.456 3.544 12 O -0.481 6.481 13 O -0.306 6.306 14 C 0.129 3.871 15 C -0.129 4.129 16 C -0.045 4.045 17 C -0.044 4.044 18 C 0.225 3.775 19 N -0.280 5.280 20 N -0.288 5.288 21 C 0.140 3.860 22 O -0.224 6.224 23 C -0.065 4.065 24 C -0.125 4.125 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.142 0.858 31 H 0.147 0.853 32 H 0.264 0.736 33 H 0.139 0.861 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 -23.471 1.951 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.137 4.137 11 C 0.300 3.700 12 O -0.364 6.364 13 O -0.223 6.223 14 C 0.086 3.914 15 C -0.148 4.148 16 C -0.064 4.064 17 C -0.046 4.046 18 C 0.017 3.983 19 N -0.128 5.128 20 N -0.134 5.134 21 C -0.090 4.090 22 O -0.103 6.103 23 C -0.085 4.085 24 C -0.144 4.144 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.279 0.721 33 H 0.157 0.843 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.781 -23.397 0.753 23.422 hybrid contribution 0.671 0.621 1.263 1.559 sum 1.452 -22.776 2.016 22.911 Atomic orbital electron populations 1.69978 1.06117 1.27021 1.49551 1.25022 0.94869 0.99391 0.94990 0.86580 0.79503 0.82781 0.78679 1.20109 1.21230 1.20128 1.21081 0.93060 0.90493 1.52314 0.92247 1.19055 0.93189 0.89156 0.99061 1.21865 1.00816 0.86545 1.04499 1.25367 0.88266 0.84683 0.71696 1.90700 1.15582 1.86614 1.43505 1.84730 1.40096 1.13490 1.83945 1.18916 0.92621 0.86601 0.93231 1.21346 0.97598 0.97927 0.97879 1.21006 0.95806 0.91574 0.98021 1.17201 1.00768 0.90084 0.96581 1.25573 0.98143 0.91831 0.82736 1.74796 1.09854 1.05883 1.22255 1.74371 1.18769 1.06511 1.13716 1.29718 0.92652 0.95493 0.91116 1.84895 1.54573 1.28565 1.42241 1.21042 0.94747 0.96539 0.96140 1.21046 1.00130 0.94807 0.98387 0.92690 0.95462 0.95462 0.88469 0.88409 0.84032 0.83564 0.72067 0.84276 0.83877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.53 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.82 4.26 -27.88 -0.12 0.70 16 10 C -0.10 -1.89 5.75 -27.89 -0.16 -2.05 16 11 C 0.46 8.36 7.73 36.00 0.28 8.64 16 12 O -0.48 -10.38 15.39 -18.75 -0.29 -10.67 16 13 O -0.31 -4.72 10.03 -23.44 -0.24 -4.96 16 14 C 0.13 1.79 5.28 -39.10 -0.21 1.59 16 15 C -0.13 -1.68 9.30 -39.49 -0.37 -2.05 16 16 C -0.04 -0.52 9.69 -39.22 -0.38 -0.90 16 17 C -0.04 -0.50 5.87 -104.97 -0.62 -1.12 16 18 C 0.22 2.58 7.99 -13.89 -0.11 2.47 16 19 N -0.28 -3.65 11.91 32.06 0.38 -3.27 16 20 N -0.29 -3.30 12.22 29.46 0.36 -2.94 16 21 C 0.14 1.03 13.36 52.13 0.70 1.73 16 22 O -0.22 -2.09 10.67 3.88 0.04 -2.04 16 23 C -0.06 -0.66 9.72 -39.22 -0.38 -1.04 16 24 C -0.13 -1.43 9.97 -39.49 -0.39 -1.83 16 25 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 28 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 29 H 0.10 1.67 8.14 -51.93 -0.42 1.24 16 30 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.15 1.55 7.86 -52.48 -0.41 1.14 16 32 H 0.26 0.32 8.06 -52.49 -0.42 -0.10 16 33 H 0.14 1.05 7.93 -52.48 -0.42 0.64 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -33.90 316.35 -4.75 -38.66 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -3.33 Total: -2.85 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -2.17 Total: -6.94 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 1.48 Total: -31.90 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.48 Total: -17.67 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.90 -4.75 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812828723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.380 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds