Wall clock time and date at job start Tue Mar 31 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00240 * 2 1 4 4 H 1.48500 * 109.47093 * 239.99884 * 3 2 1 5 5 H 1.48497 * 109.46698 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47093 * 120.00248 * 3 2 1 7 7 C 1.37877 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00206 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00042 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47413 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47426 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99966 * 0.02562 * 11 10 9 13 13 O 1.34271 * 120.00470 * 180.02562 * 11 10 9 14 14 C 1.35860 * 117.00151 * 185.78061 * 13 11 10 15 15 C 1.38882 * 119.91723 * 68.99894 * 14 13 11 16 16 C 1.37825 * 120.08873 * 179.97438 * 15 14 13 17 17 C 1.39620 * 119.91281 * 359.97438 * 16 15 14 18 18 C 1.47772 * 120.08825 * 179.97438 * 17 16 15 19 19 N 1.31273 * 126.38417 * 0.02562 * 18 17 16 20 20 N 1.28666 * 109.25052 * 179.97438 * 19 18 17 21 21 C 1.30354 * 109.53628 * 0.02562 * 20 19 18 22 22 O 1.34456 * 107.63306 * 359.73512 * 21 20 19 23 23 C 1.39617 * 119.82400 * 0.02562 * 17 16 15 24 24 C 1.37826 * 119.91197 * 359.97438 * 23 17 16 25 25 H 0.97000 * 119.99758 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46743 * 59.99713 * 9 7 2 27 27 H 1.08995 * 109.47071 * 300.00052 * 9 7 2 28 28 H 1.09005 * 109.46934 * 59.99815 * 10 9 7 29 29 H 1.08997 * 109.47047 * 300.00686 * 10 9 7 30 30 H 1.08001 * 119.95294 * 0.25107 * 15 14 13 31 31 H 1.08005 * 120.04338 * 179.97438 * 16 15 14 32 32 H 1.07998 * 126.18854 * 180.02562 * 21 20 19 33 33 H 1.08005 * 120.04287 * 179.97438 * 23 17 16 34 34 H 1.08001 * 119.95481 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4917 -4.9672 0.0033 12 8 0.2835 -4.9672 0.0041 13 8 2.1630 -6.1301 0.0039 14 6 1.4282 -7.2665 -0.1164 15 6 0.7899 -7.5549 -1.3156 16 6 0.0440 -8.7070 -1.4417 17 6 -0.0689 -9.5850 -0.3620 18 6 -0.8681 -10.8211 -0.4928 19 7 -1.5212 -11.2168 -1.5605 20 7 -2.1025 -12.3373 -1.3112 21 6 -1.8463 -12.6979 -0.0851 22 8 -1.0578 -11.7553 0.4605 23 6 0.5743 -9.2915 0.8419 24 6 1.3183 -8.1373 0.9600 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6248 -2.5563 0.8919 28 1 2.8726 -3.6040 0.8910 29 1 2.8712 -3.6048 -0.8890 30 1 0.8818 -6.8777 -2.1519 31 1 -0.4524 -8.9304 -2.3746 32 1 -2.1993 -13.5944 0.4029 33 1 0.4890 -9.9679 1.6795 34 1 1.8166 -7.9098 1.8908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812828723.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:22 Heat of formation + Delta-G solvation = -39.739658 kcal Electronic energy + Delta-G solvation = -20841.430273 eV Core-core repulsion = 17319.915023 eV Total energy + Delta-G solvation = -3521.515250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.23672 -42.45807 -40.01107 -38.06889 -37.29647 -35.66670 -33.68206 -33.08360 -32.36843 -30.55421 -28.19021 -25.90672 -25.14419 -24.40430 -23.56556 -22.81610 -21.58519 -19.51826 -19.20486 -18.68173 -18.37803 -17.86335 -17.62501 -17.43298 -16.57145 -16.49823 -15.87629 -15.71108 -14.95137 -14.73845 -14.56980 -14.32351 -14.11556 -13.62558 -13.56117 -13.27183 -13.16801 -13.02038 -12.78822 -12.55277 -12.22644 -12.00146 -11.95406 -11.79016 -11.60201 -11.37214 -11.28682 -10.56363 -10.27829 -9.65672 -8.19549 -6.33236 -0.83929 0.11412 0.44607 1.06966 1.18884 1.28985 1.44814 1.48400 1.55968 1.70301 2.43216 2.54767 2.78156 3.14702 3.46802 3.58477 3.71113 3.75221 3.94128 4.04613 4.09971 4.31130 4.32932 4.44105 4.55445 4.67022 4.78811 4.85146 4.97950 5.04566 5.12301 5.23802 5.46763 5.54645 5.60748 5.80691 6.12817 6.74523 6.85764 7.14301 7.37264 8.92716 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.046753 B = 0.002517 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.754532 B =11120.686811 C =11357.935247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.037 3.963 10 C -0.090 4.090 11 C 0.466 3.534 12 O -0.522 6.522 13 O -0.292 6.292 14 C 0.091 3.909 15 C -0.138 4.138 16 C -0.051 4.051 17 C -0.042 4.042 18 C 0.213 3.787 19 N -0.309 5.309 20 N -0.335 5.335 21 C 0.176 3.824 22 O -0.222 6.222 23 C -0.055 4.055 24 C -0.120 4.120 25 H 0.263 0.737 26 H -0.009 1.009 27 H -0.009 1.009 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.321 0.679 33 H 0.172 0.828 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.418 -25.045 3.239 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.000 4.000 10 C -0.127 4.127 11 C 0.312 3.688 12 O -0.409 6.409 13 O -0.208 6.208 14 C 0.049 3.951 15 C -0.157 4.157 16 C -0.071 4.071 17 C -0.044 4.044 18 C 0.004 3.996 19 N -0.156 5.156 20 N -0.179 5.179 21 C -0.053 4.053 22 O -0.100 6.100 23 C -0.074 4.074 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.156 0.844 31 H 0.168 0.832 32 H 0.335 0.665 33 H 0.189 0.811 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.380 -25.009 2.027 25.203 hybrid contribution 0.098 0.861 0.890 1.242 sum 2.479 -24.148 2.918 24.449 Atomic orbital electron populations 1.70151 1.08228 1.27986 1.51214 1.26086 0.95696 1.03845 0.94566 0.85382 0.78043 0.77391 0.79508 1.18733 1.21549 1.18669 1.21612 0.94197 0.91160 1.51155 0.90211 1.18825 0.93709 0.91846 0.95645 1.21596 0.99362 0.84839 1.06940 1.25066 0.87447 0.85601 0.70691 1.90688 1.17262 1.87372 1.45530 1.84678 1.39547 1.13199 1.83353 1.19256 0.94635 0.86558 0.94653 1.21392 0.97990 0.98438 0.97847 1.21056 0.95809 0.91467 0.98731 1.17359 1.00312 0.89921 0.96809 1.25456 0.98633 0.92353 0.83109 1.74733 1.10520 1.06897 1.23425 1.74314 1.20714 1.06798 1.16119 1.30990 0.89310 0.95247 0.89794 1.84916 1.54900 1.28507 1.41702 1.21349 0.93301 0.96304 0.96473 1.21317 0.99707 0.94447 0.98326 0.92789 0.99061 0.99017 0.85873 0.85942 0.84411 0.83161 0.66472 0.81079 0.81719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 3 Si 0.97 42.84 29.54 68.60 2.03 44.86 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.54 -29.37 9.11 25.60 0.23 -29.14 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.04 1.93 4.26 29.85 0.13 2.05 16 10 C -0.09 -3.38 5.75 29.85 0.17 -3.21 16 11 C 0.47 17.25 7.73 71.23 0.55 17.80 16 12 O -0.52 -23.42 15.39 21.96 0.34 -23.08 16 13 O -0.29 -8.86 10.03 5.19 0.05 -8.81 16 14 C 0.09 2.50 5.28 22.58 0.12 2.62 16 15 C -0.14 -3.68 9.30 22.33 0.21 -3.47 16 16 C -0.05 -1.22 9.69 22.51 0.22 -1.00 16 17 C -0.04 -0.92 5.87 -20.09 -0.12 -1.03 16 18 C 0.21 4.63 7.99 87.30 0.70 5.33 16 19 N -0.31 -7.88 11.91 -166.31 -1.98 -9.86 16 20 N -0.34 -7.21 12.22 -175.20 -2.14 -9.35 16 21 C 0.18 2.02 13.36 130.46 1.74 3.76 16 22 O -0.22 -3.50 10.67 -9.03 -0.10 -3.59 16 23 C -0.05 -1.00 9.72 22.51 0.22 -0.78 16 24 C -0.12 -2.54 9.97 22.33 0.22 -2.32 16 25 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 26 H -0.01 -0.53 8.10 -2.39 -0.02 -0.55 16 27 H -0.01 -0.50 8.10 -2.39 -0.02 -0.52 16 28 H 0.12 3.98 8.14 -2.38 -0.02 3.96 16 29 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 31 H 0.15 3.34 7.86 -2.91 -0.02 3.31 16 32 H 0.32 -0.87 8.06 -2.91 -0.02 -0.89 16 33 H 0.17 1.97 7.93 -2.91 -0.02 1.95 16 34 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -77.22 316.35 4.47 -72.75 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.13 Total: 3.34 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 4.85 Total: -9.15 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -3.84 Total: -76.31 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: 0.29 Total: -35.49 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -77.22 4.47 -72.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812828723.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.007 kcal (2) G-P(sol) polarization free energy of solvation -77.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds