Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48504 * 109.46908 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47475 * 300.00617 * 3 2 1 6 6 H 1.48500 * 109.47068 * 60.00587 * 3 2 1 7 7 C 1.37875 * 119.99628 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99722 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47091 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.46732 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00435 * 0.02562 * 11 10 9 13 13 O 1.34278 * 119.99538 * 179.97438 * 11 10 9 14 14 C 1.35830 * 116.99775 * 185.28566 * 13 11 10 15 15 C 1.38566 * 120.13265 * 266.74972 * 14 13 11 16 16 C 1.38181 * 120.08421 * 179.97438 * 15 14 13 17 17 C 1.38446 * 120.35706 * 359.97438 * 16 15 14 18 18 C 1.37927 * 120.26378 * 0.02562 * 17 16 15 19 19 C 1.39555 * 119.90772 * 0.02562 * 18 17 16 20 20 C 1.47732 * 120.17409 * 180.02562 * 19 18 17 21 21 N 1.31283 * 126.38757 * 180.02562 * 20 19 18 22 22 N 1.28660 * 109.24553 * 179.97438 * 21 20 19 23 23 C 1.30353 * 109.54564 * 0.02562 * 22 21 20 24 24 O 1.34452 * 107.62946 * 359.75825 * 23 22 21 25 25 H 0.97005 * 119.99885 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.46790 * 60.00268 * 9 7 2 27 27 H 1.08998 * 109.46760 * 300.00132 * 9 7 2 28 28 H 1.09000 * 109.46809 * 60.00029 * 10 9 7 29 29 H 1.09001 * 109.47239 * 300.00224 * 10 9 7 30 30 H 1.07997 * 119.96125 * 359.97438 * 15 14 13 31 31 H 1.08001 * 119.82497 * 179.69937 * 16 15 14 32 32 H 1.08001 * 119.87021 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.04397 * 179.97438 * 18 17 16 34 34 H 1.07998 * 126.18598 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0012 12 8 0.2834 -4.9672 -0.0003 13 8 2.1631 -6.1301 -0.0026 14 6 1.4276 -7.2666 -0.1135 15 6 1.0141 -7.9413 1.0240 16 6 0.2654 -9.0971 0.9101 17 6 -0.0771 -9.5887 -0.3379 18 6 0.3267 -8.9288 -1.4798 19 6 1.0841 -7.7611 -1.3776 20 6 1.5193 -7.0493 -2.5968 21 7 2.2316 -5.9474 -2.6429 22 7 2.4209 -5.6160 -3.8716 23 6 1.8419 -6.4849 -4.6519 24 8 1.2633 -7.4128 -3.8695 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5570 0.8897 28 1 2.8726 -3.6047 0.8877 29 1 2.8713 -3.6040 -0.8922 30 1 1.2773 -7.5633 2.0009 31 1 -0.0505 -9.6223 1.7994 32 1 -0.6629 -10.4926 -0.4178 33 1 0.0579 -9.3157 -2.4516 34 1 1.8319 -6.4652 -5.7316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813093855.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -37.162645 kcal Electronic energy + Delta-G solvation = -22131.443079 eV Core-core repulsion = 18610.039576 eV Total energy + Delta-G solvation = -3521.403502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.26404 -42.39975 -39.91294 -37.94603 -37.28827 -35.69438 -33.96313 -33.24215 -31.65964 -30.74353 -28.16749 -25.82573 -25.27135 -24.65568 -23.30686 -22.82931 -21.56446 -19.59466 -19.05740 -18.59760 -18.41658 -17.87265 -17.63956 -17.36881 -16.55716 -16.50804 -15.93484 -15.86402 -15.04890 -14.80088 -14.56090 -14.28931 -13.92242 -13.58363 -13.29900 -13.22045 -13.03134 -12.88087 -12.79542 -12.50385 -12.14054 -12.04941 -11.93303 -11.81489 -11.61135 -11.56618 -11.31881 -10.60989 -10.03845 -9.73222 -8.22189 -6.36228 -0.76368 -0.00323 0.56652 1.10355 1.13802 1.37846 1.41352 1.43168 1.57026 1.77376 2.41638 2.62607 2.79072 3.11324 3.42838 3.61142 3.78470 3.84434 4.01756 4.13097 4.22599 4.29967 4.31173 4.39256 4.57624 4.65332 4.73983 4.91649 5.07792 5.16228 5.26902 5.31153 5.42271 5.49512 5.72262 5.76610 6.10597 6.76703 6.83466 7.14129 7.33759 8.91071 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.019321 B = 0.004464 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.859489 B = 6271.150611 C = 7262.385407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.976 3.024 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.047 3.953 10 C -0.089 4.089 11 C 0.483 3.517 12 O -0.532 6.532 13 O -0.290 6.290 14 C 0.095 3.905 15 C -0.134 4.134 16 C -0.067 4.067 17 C -0.106 4.106 18 C -0.070 4.070 19 C -0.066 4.066 20 C 0.198 3.802 21 N -0.306 5.306 22 N -0.337 5.337 23 C 0.172 3.828 24 O -0.220 6.220 25 H 0.265 0.735 26 H -0.019 1.019 27 H -0.006 1.006 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.149 0.851 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.162 0.838 34 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.970 -24.223 -4.424 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.800 3.200 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.093 0.907 9 C 0.010 3.990 10 C -0.127 4.127 11 C 0.329 3.671 12 O -0.420 6.420 13 O -0.205 6.205 14 C 0.052 3.948 15 C -0.153 4.153 16 C -0.085 4.085 17 C -0.124 4.124 18 C -0.089 4.089 19 C -0.069 4.069 20 C -0.011 4.011 21 N -0.153 5.153 22 N -0.181 5.181 23 C -0.057 4.057 24 O -0.099 6.099 25 H 0.073 0.927 26 H 0.000 1.000 27 H 0.012 0.988 28 H 0.136 0.864 29 H 0.123 0.877 30 H 0.166 0.834 31 H 0.198 0.802 32 H 0.202 0.798 33 H 0.179 0.821 34 H 0.339 0.661 Dipole moment (debyes) X Y Z Total from point charges 2.168 -23.049 -4.059 23.504 hybrid contribution -0.524 0.324 -0.720 0.947 sum 1.644 -22.725 -4.779 23.280 Atomic orbital electron populations 1.70174 1.08247 1.27936 1.51216 1.26104 0.95762 1.03849 0.94281 0.85233 0.79211 0.77817 0.77765 1.17838 1.20514 1.20088 1.21626 0.94015 0.91208 1.51294 0.90704 1.18732 0.93375 0.91795 0.95101 1.21506 0.99532 0.85850 1.05777 1.24705 0.87113 0.85507 0.69731 1.90610 1.17133 1.87554 1.46691 1.84644 1.39331 1.13148 1.83426 1.18986 0.95825 0.87030 0.92938 1.21585 0.98648 0.97714 0.97304 1.21807 0.93241 0.93098 1.00328 1.21716 0.99039 1.01114 0.90491 1.21538 0.93738 0.91334 1.02318 1.17815 1.04836 0.98909 0.85301 1.25724 0.97187 0.93443 0.84734 1.74832 1.15916 1.11145 1.13379 1.74337 1.21863 1.25615 0.96266 1.31029 0.90356 0.82327 1.02019 1.84861 1.61112 1.47666 1.16254 0.92663 1.00046 0.98752 0.86352 0.87712 0.83362 0.80236 0.79822 0.82068 0.66129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.16 13.29 21.45 0.28 -59.88 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.98 45.56 29.54 68.60 2.03 47.58 16 4 H -0.25 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -32.36 9.11 25.60 0.23 -32.13 16 8 H 0.07 4.13 7.74 -2.91 -0.02 4.11 16 9 C 0.05 2.77 4.26 29.85 0.13 2.90 16 10 C -0.09 -4.19 5.75 29.85 0.17 -4.02 16 11 C 0.48 21.97 6.68 71.24 0.48 22.44 16 12 O -0.53 -27.47 15.73 21.96 0.35 -27.13 16 13 O -0.29 -11.31 8.77 5.45 0.05 -11.26 16 14 C 0.10 3.11 4.93 22.78 0.11 3.22 16 15 C -0.13 -3.25 9.98 22.33 0.22 -3.03 16 16 C -0.07 -1.00 10.03 22.31 0.22 -0.78 16 17 C -0.11 -1.40 10.03 22.25 0.22 -1.17 16 18 C -0.07 -1.35 9.72 22.51 0.22 -1.13 16 19 C -0.07 -1.98 5.88 -20.02 -0.12 -2.09 16 20 C 0.20 6.59 7.92 87.29 0.69 7.28 16 21 N -0.31 -12.04 9.85 -166.33 -1.64 -13.68 16 22 N -0.34 -11.62 12.22 -175.20 -2.14 -13.76 16 23 C 0.17 3.80 13.36 130.46 1.74 5.55 16 24 O -0.22 -5.57 10.67 -9.06 -0.10 -5.67 16 25 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 26 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 27 H -0.01 -0.38 8.10 -2.39 -0.02 -0.40 16 28 H 0.12 4.85 8.14 -2.39 -0.02 4.83 16 29 H 0.10 4.85 8.14 -2.39 -0.02 4.83 16 30 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 32 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 33 H 0.16 2.23 7.93 -2.91 -0.02 2.21 16 34 H 0.32 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -88.76 313.19 4.75 -84.01 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.13 Total: 2.42 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 4.79 Total: -2.64 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -3.49 Total: -87.32 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: 0.30 Total: -44.06 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -88.76 4.75 -84.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813093855.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.845 kcal (2) G-P(sol) polarization free energy of solvation -88.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds