Wall clock time and date at job start Tue Mar 31 2020 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53008 * 109.47076 * 26.08248 * 3 2 1 5 5 N 1.46492 * 109.47112 * 179.97438 * 4 3 2 6 6 C 1.46506 * 120.00190 * 269.99835 * 5 4 3 7 7 C 1.50699 * 109.46963 * 270.00171 * 6 5 4 8 8 H 1.08000 * 119.99823 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00077 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99582 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99852 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46993 * 90.00236 * 11 9 7 13 13 H 1.48502 * 109.46966 * 209.99903 * 11 9 7 14 14 H 1.48501 * 109.47366 * 330.00054 * 11 9 7 15 15 C 1.34781 * 120.00440 * 89.99344 * 5 4 3 16 16 O 1.21785 * 120.00410 * 179.72181 * 15 5 4 17 17 C 1.43205 * 119.99554 * 0.02562 * 15 5 4 18 18 C 4.66316 * 127.17645 * 318.92603 * 2 1 3 19 19 C 5.31538 * 113.29182 * 313.26539 * 2 1 3 20 20 C 1.37041 * 125.47460 * 267.08424 * 19 18 17 21 21 C 1.37431 * 113.22240 * 179.97438 * 20 19 18 22 22 C 1.33870 * 115.12660 * 359.97438 * 21 20 19 23 23 S 1.70603 * 111.01571 * 359.74629 * 22 21 20 24 24 H 1.08987 * 109.47332 * 266.07620 * 3 2 1 25 25 H 1.09003 * 109.46590 * 146.07220 * 3 2 1 26 26 H 1.08994 * 109.47264 * 59.99258 * 4 3 2 27 27 H 1.09001 * 109.46439 * 299.99517 * 4 3 2 28 28 H 1.09003 * 109.46876 * 29.99864 * 6 5 4 29 29 H 1.09002 * 109.47433 * 149.99696 * 6 5 4 30 30 H 0.97007 * 119.99711 * 180.02562 * 10 9 7 31 31 H 1.07999 * 123.39413 * 359.97438 * 20 19 18 32 32 H 1.08000 * 122.43842 * 180.02562 * 21 20 19 33 33 H 1.07998 * 124.49126 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.2948 -0.6343 5 7 4.5835 -1.2939 -0.6348 6 6 5.3153 -0.7358 -1.7747 7 6 5.5667 -1.8207 -2.7900 8 1 5.2168 -2.8254 -2.6045 9 6 6.2434 -1.5305 -3.9558 10 7 6.6699 -0.3071 -4.1813 11 14 6.5557 -2.8755 -5.2139 12 1 5.4252 -2.9259 -6.1755 13 1 7.8152 -2.5862 -5.9454 14 1 6.6749 -4.1835 -4.5210 15 6 5.2582 -1.8063 0.4134 16 8 6.4761 -1.8102 0.4107 17 6 4.5430 -2.3523 1.5275 18 6 3.9538 -2.8010 2.4412 19 6 3.2378 -3.3461 3.5551 20 6 3.5643 -3.1689 4.8742 21 6 2.7032 -3.8051 5.7359 22 6 1.7067 -4.4792 5.1489 23 16 1.7933 -4.3433 3.4505 24 1 2.9713 0.0711 1.0251 25 1 2.9709 0.8536 -0.5736 26 1 2.7552 -1.3652 -1.6594 27 1 2.7556 -2.1477 -0.0607 28 1 4.7255 0.0593 -2.2310 29 1 6.2676 -0.3309 -1.4322 30 1 7.1457 -0.1029 -5.0017 31 1 4.4129 -2.5877 5.2036 32 1 2.8214 -3.7636 6.8086 33 1 0.9459 -5.0318 5.6802 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825388967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:18 Heat of formation + Delta-G solvation = 77.755068 kcal Electronic energy + Delta-G solvation = -18698.401758 eV Core-core repulsion = 15624.734333 eV Total energy + Delta-G solvation = -3073.667425 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.29860 -38.10426 -36.86226 -35.31641 -33.80965 -32.82996 -30.91558 -29.59248 -27.50736 -25.19824 -24.16454 -23.61022 -21.19889 -19.73928 -18.56247 -17.74914 -16.98243 -16.52978 -16.04741 -15.92808 -14.74523 -14.58452 -14.51201 -14.15011 -13.77426 -13.58069 -13.19889 -13.04831 -12.87644 -12.52199 -12.42342 -12.29281 -11.84498 -11.41997 -11.25861 -11.18741 -11.00218 -10.91842 -10.69369 -10.37699 -10.23097 -9.78113 -9.56261 -8.85504 -8.63433 -8.50626 -7.98972 -6.12927 -4.17964 0.27727 1.01148 1.68466 1.99631 2.37315 2.75450 2.82661 2.90183 3.27606 3.34895 3.36867 3.43210 3.92305 4.01234 4.37531 4.48396 4.75603 5.00884 5.05598 5.13702 5.22453 5.24486 5.38530 5.47198 5.72041 5.79340 5.97635 6.04177 6.10278 6.81524 7.19638 7.22102 7.33618 7.58240 7.82712 8.04975 8.10438 8.64006 8.87359 9.47761 10.95264 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.003944 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.837630 B = 7097.127423 C = 7834.878990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.218 3.782 3 C -0.050 4.050 4 C 0.117 3.883 5 N -0.580 5.580 6 C 0.245 3.755 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.617 3.383 16 O -0.510 6.510 17 C -0.143 4.143 18 C -0.060 4.060 19 C -0.113 4.113 20 C -0.100 4.100 21 C -0.139 4.139 22 C -0.253 4.253 23 S 0.216 5.784 24 H 0.106 0.894 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.265 0.735 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.862 -4.432 16.314 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.100 4.100 3 C -0.091 4.091 4 C -0.009 4.009 5 N -0.310 5.310 6 C 0.127 3.873 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.403 3.597 16 O -0.386 6.386 17 C -0.152 4.152 18 C -0.064 4.064 19 C -0.230 4.230 20 C -0.131 4.131 21 C -0.170 4.170 22 C -0.390 4.390 23 S 0.487 5.513 24 H 0.124 0.876 25 H 0.137 0.863 26 H 0.118 0.882 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -11.735 -4.905 14.984 19.654 hybrid contribution 1.418 -0.204 0.618 1.560 sum -10.317 -5.109 15.602 19.390 Atomic orbital electron populations 1.81195 1.12954 1.08745 1.09210 1.29040 0.95048 0.93082 0.92846 1.19870 0.81550 1.02788 1.04940 1.21347 0.81624 0.94890 1.03067 1.48128 1.05300 1.58486 1.19106 1.19498 0.92778 0.94167 0.80887 1.21406 1.37175 0.96035 1.02560 0.92151 1.24904 0.95121 0.95701 0.98113 1.69914 1.38111 1.18759 1.26290 0.86487 0.77742 0.82091 0.81085 1.20593 1.21046 1.19806 1.14776 0.85943 0.79127 0.79856 1.90919 1.12201 1.56105 1.79420 1.21297 0.96856 1.01292 0.95728 1.17858 0.98370 0.96485 0.93708 1.20442 1.01596 1.08264 0.92684 1.20866 1.01084 1.01044 0.90123 1.19936 0.95563 1.00054 1.01479 1.25280 1.05589 1.08493 0.99627 1.83340 1.21013 1.44924 1.02063 0.87560 0.86263 0.88181 0.90694 0.94023 0.93068 0.92558 0.83219 0.83887 0.81509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.70 18.54 42.15 0.78 -5.92 16 2 C 0.22 2.77 15.43 -20.76 -0.32 2.45 16 3 C -0.05 -0.57 6.03 -29.51 -0.18 -0.74 16 4 C 0.12 1.65 5.17 -4.04 -0.02 1.63 16 5 N -0.58 -10.91 2.46 -177.89 -0.44 -11.35 16 6 C 0.24 5.70 5.16 -5.19 -0.03 5.67 16 7 C -0.53 -14.05 9.39 -34.44 -0.32 -14.37 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 11 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 15 C 0.62 12.26 7.53 -14.33 -0.11 12.15 16 16 O -0.51 -12.33 16.68 5.11 0.09 -12.25 16 17 C -0.14 -2.36 11.71 -38.81 -0.45 -2.82 16 18 C -0.06 -0.87 13.75 -38.81 -0.53 -1.40 16 19 C -0.11 -1.35 6.34 -38.09 -0.24 -1.59 16 20 C -0.10 -1.01 10.26 -40.31 -0.41 -1.42 16 21 C -0.14 -1.16 10.15 -41.41 -0.42 -1.58 16 22 C -0.25 -2.02 10.92 29.20 0.32 -1.70 16 23 S 0.22 2.09 23.07 -107.50 -2.48 -0.39 16 24 H 0.11 1.07 8.14 -51.94 -0.42 0.65 16 25 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 27 H 0.07 0.98 6.89 -51.93 -0.36 0.62 16 28 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 29 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 31 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -31.79 329.21 -7.43 -39.22 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -3.24 Total: -3.89 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.82 Total: -2.07 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 1.08 Total: -41.54 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.48 Total: -0.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.79 -7.43 -39.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825388967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.978 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds