Wall clock time and date at job start Tue Mar 31 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86802 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47122 * 300.00114 * 3 2 1 6 6 H 1.48500 * 109.47079 * 59.99766 * 3 2 1 7 7 C 1.39047 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99859 * 179.85258 * 7 2 1 9 9 N 1.36847 * 120.00052 * 359.85611 * 7 2 1 10 10 C 1.46500 * 120.00003 * 346.90004 * 9 7 2 11 11 C 1.50702 * 109.47077 * 83.21201 * 10 9 7 12 12 O 1.20821 * 119.99944 * 359.97438 * 11 10 9 13 13 O 1.34229 * 119.99845 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99792 * 166.89868 * 9 7 2 15 15 O 1.21661 * 120.00176 * 4.31524 * 14 9 7 16 16 C 1.47240 * 119.99796 * 184.03511 * 14 9 7 17 17 C 1.39364 * 120.32190 * 300.82892 * 16 14 9 18 18 C 1.38243 * 120.24249 * 180.02562 * 17 16 14 19 19 C 1.38097 * 120.82342 * 359.97093 * 18 17 16 20 20 C 1.38958 * 120.27003 * 0.02883 * 19 18 17 21 21 N 1.37887 * 133.34521 * 179.97438 * 20 19 18 22 22 H 0.97003 * 125.57283 * 0.06330 * 21 20 19 23 23 C 1.36695 * 108.86164 * 180.02562 * 21 20 19 24 24 C 1.34447 * 109.61833 * 359.97438 * 23 21 20 25 25 C 1.40606 * 119.68486 * 359.72375 * 20 19 18 26 26 H 0.96998 * 120.00211 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46746 * 203.20859 * 10 9 7 28 28 H 1.08994 * 109.47011 * 323.20667 * 10 9 7 29 29 H 0.96697 * 116.99978 * 180.02562 * 13 11 10 30 30 H 1.07996 * 119.87981 * 0.02562 * 17 16 14 31 31 H 1.07999 * 119.58819 * 180.02562 * 18 17 16 32 32 H 1.07993 * 119.86107 * 180.02562 * 19 18 17 33 33 H 1.08003 * 125.19124 * 180.02562 * 23 21 20 34 34 H 1.08008 * 126.07635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8889 2.3965 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0889 -1.2042 -0.0029 9 7 1.3246 -2.3893 0.0019 10 6 -0.1112 -2.4056 0.2926 11 6 -0.8815 -2.0855 -0.9625 12 8 -0.2916 -1.8659 -1.9938 13 8 -2.2228 -2.0434 -0.9344 14 6 1.9716 -3.5415 -0.2632 15 8 3.1771 -3.5385 -0.4271 16 6 1.2203 -4.8050 -0.3483 17 6 0.4803 -5.2583 0.7422 18 6 -0.2241 -6.4450 0.6607 19 6 -0.2085 -7.1991 -0.4961 20 6 0.5201 -6.7733 -1.6001 21 7 0.7230 -7.2968 -2.8594 22 1 0.3460 -8.1259 -3.1934 23 6 1.5414 -6.4562 -3.5609 24 6 1.8734 -5.4041 -2.7924 25 6 1.2383 -5.5661 -1.5369 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3978 -3.3937 0.6528 28 1 -0.3356 -1.6612 1.0565 29 1 -2.6730 -1.8343 -1.7643 30 1 0.4570 -4.6804 1.6542 31 1 -0.7944 -6.7862 1.5120 32 1 -0.7647 -8.1236 -0.5429 33 1 1.8705 -6.6128 -4.5776 34 1 2.5082 -4.5798 -3.0825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:51 Heat of formation + Delta-G solvation = -36.143820 kcal Electronic energy + Delta-G solvation = -23253.424723 eV Core-core repulsion = 19732.065400 eV Total energy + Delta-G solvation = -3521.359323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12410 -39.27737 -38.07122 -36.22451 -35.13024 -34.30852 -32.00272 -31.43427 -29.28851 -28.48518 -27.54420 -25.08030 -22.97438 -21.56277 -20.93103 -20.66109 -19.47600 -17.44513 -17.01391 -16.81199 -16.37607 -15.58382 -15.35095 -15.08889 -14.36922 -14.27366 -14.21603 -14.09736 -13.88366 -12.87381 -12.84866 -12.60372 -12.33594 -11.94172 -11.74978 -11.34621 -11.22787 -11.12911 -10.96183 -10.81849 -10.35217 -10.31599 -10.20501 -9.52165 -9.38904 -9.00573 -8.53892 -7.98474 -7.89287 -7.30724 -6.39616 -3.91539 1.25985 1.91276 3.08272 3.14394 3.24826 3.31507 3.33615 3.60892 3.85025 4.02038 4.26487 4.43696 4.78656 5.07767 5.16803 5.20362 5.34963 5.44455 5.68217 5.70717 5.94125 6.07130 6.11547 6.28365 6.51112 6.68808 6.75250 6.86041 6.89481 6.98169 7.11808 7.42547 7.50218 7.72265 7.75148 7.96549 8.37520 9.06936 9.22361 9.35119 9.83016 10.62278 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.006252 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.244580 B = 4477.376703 C = 4774.588115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.027 3.973 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.282 4.282 8 H 0.111 0.889 9 N -0.424 5.424 10 C 0.138 3.862 11 C 0.503 3.497 12 O -0.521 6.521 13 O -0.535 6.535 14 C 0.495 3.505 15 O -0.571 6.571 16 C -0.043 4.043 17 C -0.136 4.136 18 C -0.099 4.099 19 C -0.133 4.133 20 C 0.086 3.914 21 N -0.595 5.595 22 H 0.413 0.587 23 C 0.032 3.968 24 C -0.176 4.176 25 C -0.069 4.069 26 H 0.272 0.728 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.387 0.613 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.168 0.832 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 -11.404 -1.288 12.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.173 4.173 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.409 4.409 8 H 0.128 0.872 9 N -0.142 5.142 10 C 0.012 3.988 11 C 0.344 3.656 12 O -0.407 6.407 13 O -0.346 6.346 14 C 0.284 3.716 15 O -0.455 6.455 16 C -0.047 4.047 17 C -0.156 4.156 18 C -0.118 4.118 19 C -0.154 4.154 20 C -0.021 4.021 21 N -0.199 5.199 22 H 0.250 0.750 23 C -0.094 4.094 24 C -0.201 4.201 25 C -0.074 4.074 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.157 0.843 29 H 0.242 0.758 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.134 0.866 33 H 0.185 0.815 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.791 -11.335 -1.355 12.381 hybrid contribution -0.376 0.763 -0.961 1.283 sum -5.167 -10.573 -2.316 11.993 Atomic orbital electron populations 1.69462 1.06059 1.27549 1.51055 1.25271 0.95686 1.00048 0.96246 0.85597 0.79529 0.80311 0.77678 1.19134 1.20723 1.20628 1.19913 0.93274 0.81547 1.46162 0.87158 1.43393 1.05729 1.06098 1.58961 1.21225 0.80865 1.02384 0.94293 1.23522 0.79156 0.71840 0.91076 1.90571 1.69550 1.46484 1.34100 1.84519 1.23348 1.84535 1.42152 1.17816 0.87594 0.83355 0.82837 1.90648 1.13856 1.86362 1.54636 1.19725 0.96630 0.95480 0.92865 1.21063 0.98836 0.97415 0.98319 1.20637 0.99649 0.94600 0.96902 1.19931 1.02450 1.01182 0.91839 1.18212 1.01735 0.95229 0.86965 1.41725 1.44465 1.22499 1.11188 0.75034 1.21796 0.97353 0.92241 0.97988 1.20820 1.05494 1.00512 0.93308 1.17980 1.00446 0.94580 0.94429 0.91695 0.90142 0.84285 0.75778 0.85297 0.85558 0.86620 0.81450 0.83719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.41 7.76 55.50 0.43 -22.98 16 2 C 0.03 0.71 5.26 -17.45 -0.09 0.62 16 3 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 7 C -0.28 -7.87 9.30 -15.01 -0.14 -8.01 16 8 H 0.11 3.20 7.22 -52.48 -0.38 2.82 16 9 N -0.42 -11.10 2.18 -117.38 -0.26 -11.36 16 10 C 0.14 3.20 5.16 -5.19 -0.03 3.17 16 11 C 0.50 12.05 6.04 36.01 0.22 12.27 16 12 O -0.52 -14.42 16.58 -18.75 -0.31 -14.73 16 13 O -0.54 -10.60 13.42 -39.26 -0.53 -11.13 16 14 C 0.49 12.83 6.95 -12.60 -0.09 12.74 16 15 O -0.57 -16.53 16.72 5.22 0.09 -16.44 16 16 C -0.04 -0.93 4.98 -104.71 -0.52 -1.45 16 17 C -0.14 -2.41 7.53 -39.16 -0.29 -2.71 16 18 C -0.10 -1.42 9.99 -39.63 -0.40 -1.81 16 19 C -0.13 -1.87 10.06 -39.37 -0.40 -2.27 16 20 C 0.09 1.40 7.26 -83.98 -0.61 0.79 16 21 N -0.60 -7.76 6.14 -10.64 -0.07 -7.83 16 22 H 0.41 3.64 8.96 -40.82 -0.37 3.27 16 23 C 0.03 0.45 11.83 -16.72 -0.20 0.26 16 24 C -0.18 -3.39 10.66 -39.63 -0.42 -3.81 16 25 C -0.07 -1.40 6.03 -106.60 -0.64 -2.05 16 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.08 1.61 4.19 -51.93 -0.22 1.40 16 28 H 0.14 3.30 6.30 -51.93 -0.33 2.98 16 29 H 0.39 6.06 9.10 45.56 0.41 6.48 16 30 H 0.13 2.10 7.35 -52.49 -0.39 1.71 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.17 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.15 3.00 8.06 -52.48 -0.42 2.58 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -35.80 298.38 -6.86 -42.67 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -2.09 Total: 13.44 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -3.61 Total: 7.73 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.11 Total: -42.17 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.75 Total: -42.30 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.80 -6.86 -42.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.525 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds