Wall clock time and date at job start Tue Mar 31 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86802 * 120.00143 * 2 1 4 4 H 1.48496 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47122 * 300.00114 * 3 2 1 6 6 H 1.48500 * 109.47079 * 59.99766 * 3 2 1 7 7 C 1.39047 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99859 * 179.85258 * 7 2 1 9 9 N 1.36847 * 120.00052 * 359.85611 * 7 2 1 10 10 C 1.46500 * 120.00003 * 346.90004 * 9 7 2 11 11 C 1.50702 * 109.47077 * 83.21201 * 10 9 7 12 12 O 1.20821 * 119.99944 * 359.97438 * 11 10 9 13 13 O 1.34229 * 119.99845 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99792 * 166.89868 * 9 7 2 15 15 O 1.21661 * 120.00176 * 4.31524 * 14 9 7 16 16 C 1.47240 * 119.99796 * 184.03511 * 14 9 7 17 17 C 1.39364 * 120.32190 * 300.82892 * 16 14 9 18 18 C 1.38243 * 120.24249 * 180.02562 * 17 16 14 19 19 C 1.38097 * 120.82342 * 359.97093 * 18 17 16 20 20 C 1.38958 * 120.27003 * 0.02883 * 19 18 17 21 21 N 1.37887 * 133.34521 * 179.97438 * 20 19 18 22 22 H 0.97003 * 125.57283 * 0.06330 * 21 20 19 23 23 C 1.36695 * 108.86164 * 180.02562 * 21 20 19 24 24 C 1.34447 * 109.61833 * 359.97438 * 23 21 20 25 25 C 1.40606 * 119.68486 * 359.72375 * 20 19 18 26 26 H 0.96998 * 120.00211 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46746 * 203.20859 * 10 9 7 28 28 H 1.08994 * 109.47011 * 323.20667 * 10 9 7 29 29 H 0.96697 * 116.99978 * 180.02562 * 13 11 10 30 30 H 1.07996 * 119.87981 * 0.02562 * 17 16 14 31 31 H 1.07999 * 119.58819 * 180.02562 * 18 17 16 32 32 H 1.07993 * 119.86107 * 180.02562 * 19 18 17 33 33 H 1.08003 * 125.19124 * 180.02562 * 23 21 20 34 34 H 1.08008 * 126.07635 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7077 1.3464 -0.0006 5 1 1.8890 2.3964 -1.2125 6 1 1.8889 2.3965 1.2125 7 6 2.0089 -1.2042 -0.0005 8 1 3.0889 -1.2042 -0.0029 9 7 1.3246 -2.3893 0.0019 10 6 -0.1112 -2.4056 0.2926 11 6 -0.8815 -2.0855 -0.9625 12 8 -0.2916 -1.8659 -1.9938 13 8 -2.2228 -2.0434 -0.9344 14 6 1.9716 -3.5415 -0.2632 15 8 3.1771 -3.5385 -0.4271 16 6 1.2203 -4.8050 -0.3483 17 6 0.4803 -5.2583 0.7422 18 6 -0.2241 -6.4450 0.6607 19 6 -0.2085 -7.1991 -0.4961 20 6 0.5201 -6.7733 -1.6001 21 7 0.7230 -7.2968 -2.8594 22 1 0.3460 -8.1259 -3.1934 23 6 1.5414 -6.4562 -3.5609 24 6 1.8734 -5.4041 -2.7924 25 6 1.2383 -5.5661 -1.5369 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3978 -3.3937 0.6528 28 1 -0.3356 -1.6612 1.0565 29 1 -2.6730 -1.8343 -1.7643 30 1 0.4570 -4.6804 1.6542 31 1 -0.7944 -6.7862 1.5120 32 1 -0.7647 -8.1236 -0.5429 33 1 1.8705 -6.6128 -4.5776 34 1 2.5082 -4.5798 -3.0825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:51 Heat of formation + Delta-G solvation = -62.400641 kcal Electronic energy + Delta-G solvation = -23254.563304 eV Core-core repulsion = 19732.065400 eV Total energy + Delta-G solvation = -3522.497904 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.40502 -41.12472 -39.92238 -37.56002 -37.03553 -36.26876 -33.82652 -32.92529 -30.65630 -29.77356 -29.42203 -26.97546 -24.47056 -22.88127 -22.65594 -22.11623 -20.99123 -19.16904 -18.86559 -18.56085 -17.91288 -17.27659 -17.05053 -16.53929 -16.13073 -16.02574 -15.82288 -15.55076 -15.30755 -14.60417 -14.54998 -14.02405 -13.71958 -13.65100 -13.50924 -13.10529 -12.81432 -12.61161 -12.53320 -12.32616 -12.22003 -12.14356 -12.08034 -11.47774 -10.98946 -10.78260 -10.47013 -9.98304 -9.15720 -8.59537 -8.40656 -6.02034 -0.04789 0.64531 1.31571 1.37370 1.51904 1.72166 1.83088 1.97146 2.23349 2.26517 2.53726 2.86671 3.05049 3.17930 3.76278 4.05755 4.12296 4.28174 4.31115 4.35940 4.47352 4.71291 4.89421 4.93164 4.97988 5.06653 5.17351 5.36848 5.52271 5.58488 5.71170 5.73888 5.96072 6.01383 6.18241 6.36649 6.79057 7.03232 7.25981 7.52108 7.85876 8.58197 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.020794 B = 0.006252 C = 0.005863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.244580 B = 4477.376703 C = 4774.588115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.002 4.002 3 Si 1.001 2.999 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.257 1.257 7 C -0.325 4.325 8 H 0.080 0.920 9 N -0.435 5.435 10 C 0.141 3.859 11 C 0.509 3.491 12 O -0.565 6.565 13 O -0.519 6.519 14 C 0.488 3.512 15 O -0.625 6.625 16 C -0.098 4.098 17 C -0.132 4.132 18 C -0.099 4.099 19 C -0.105 4.105 20 C 0.076 3.924 21 N -0.570 5.570 22 H 0.440 0.560 23 C 0.084 3.916 24 C -0.252 4.252 25 C -0.103 4.103 26 H 0.276 0.724 27 H 0.112 0.888 28 H 0.133 0.867 29 H 0.408 0.592 30 H 0.134 0.866 31 H 0.174 0.826 32 H 0.167 0.833 33 H 0.216 0.784 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 -14.051 -1.270 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.200 4.200 3 Si 0.825 3.175 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.452 4.452 8 H 0.098 0.902 9 N -0.152 5.152 10 C 0.016 3.984 11 C 0.352 3.648 12 O -0.456 6.456 13 O -0.330 6.330 14 C 0.279 3.721 15 O -0.512 6.512 16 C -0.101 4.101 17 C -0.151 4.151 18 C -0.118 4.118 19 C -0.125 4.125 20 C -0.032 4.032 21 N -0.175 5.175 22 H 0.281 0.719 23 C -0.045 4.045 24 C -0.277 4.277 25 C -0.108 4.108 26 H 0.087 0.913 27 H 0.130 0.870 28 H 0.150 0.850 29 H 0.267 0.733 30 H 0.152 0.848 31 H 0.191 0.809 32 H 0.185 0.815 33 H 0.233 0.767 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.806 -14.024 -1.315 16.104 hybrid contribution 0.439 1.447 -1.041 1.836 sum -7.367 -12.577 -2.356 14.765 Atomic orbital electron populations 1.69536 1.06498 1.28362 1.50031 1.26009 0.96708 1.02288 0.95022 0.84752 0.77892 0.76555 0.78328 1.19959 1.20729 1.18117 1.19804 0.92533 0.83447 1.49428 0.90176 1.43508 1.06906 1.05741 1.59081 1.21278 0.79404 1.03869 0.93851 1.23581 0.80105 0.70628 0.90472 1.90558 1.70791 1.48586 1.35641 1.84441 1.21237 1.83823 1.43512 1.18666 0.87371 0.84919 0.81152 1.90564 1.16382 1.87545 1.56735 1.19522 1.00212 0.94706 0.95694 1.21288 0.97948 0.98827 0.97069 1.21121 0.98990 0.92907 0.98734 1.20551 0.99937 1.01967 0.90093 1.18429 1.01864 0.94097 0.88824 1.41693 1.43128 1.22837 1.09854 0.71856 1.22291 0.93956 0.89568 0.98672 1.20757 1.08964 1.02600 0.95398 1.18329 1.01741 0.96436 0.94314 0.91269 0.87039 0.84975 0.73343 0.84804 0.80862 0.81527 0.76711 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.74 7.76 21.68 0.17 -47.58 16 2 C 0.00 -0.09 5.26 84.96 0.45 0.36 16 3 Si 1.00 44.60 29.55 68.60 2.03 46.63 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.32 -19.44 9.30 84.10 0.78 -18.66 16 8 H 0.08 5.13 7.22 -2.91 -0.02 5.10 16 9 N -0.43 -24.29 2.18 -643.52 -1.40 -25.69 16 10 C 0.14 6.69 5.16 85.63 0.44 7.14 16 11 C 0.51 24.69 6.04 71.24 0.43 25.12 16 12 O -0.57 -32.44 16.58 21.98 0.36 -32.08 16 13 O -0.52 -19.83 13.42 -51.41 -0.69 -20.52 16 14 C 0.49 27.35 6.95 86.61 0.60 27.95 16 15 O -0.62 -39.90 16.72 -4.23 -0.07 -39.97 16 16 C -0.10 -4.41 4.98 -19.92 -0.10 -4.50 16 17 C -0.13 -4.55 7.53 22.54 0.17 -4.38 16 18 C -0.10 -2.42 9.99 22.24 0.22 -2.20 16 19 C -0.11 -2.42 10.06 22.41 0.23 -2.20 16 20 C 0.08 2.26 7.26 38.94 0.28 2.54 16 21 N -0.57 -12.62 6.14 -187.59 -1.15 -13.77 16 22 H 0.44 5.25 8.96 -92.71 -0.83 4.42 16 23 C 0.08 2.21 11.83 83.07 0.98 3.19 16 24 C -0.25 -10.20 10.66 22.24 0.24 -9.96 16 25 C -0.10 -4.27 6.03 -21.15 -0.13 -4.40 16 26 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 27 H 0.11 4.50 4.19 -2.38 -0.01 4.49 16 28 H 0.13 6.41 6.30 -2.39 -0.02 6.40 16 29 H 0.41 12.06 9.10 -74.06 -0.67 11.38 16 30 H 0.13 4.31 7.35 -2.91 -0.02 4.28 16 31 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 32 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.22 3.46 8.06 -2.91 -0.02 3.44 16 34 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -87.56 298.38 3.53 -84.03 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.32 Total: 28.95 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 4.60 Total: 19.99 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -2.38 Total: -87.03 kcal Atomic # 8 Polarization: -92.18 SS G_CDS: -0.40 Total: -92.57 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -87.56 3.53 -84.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.629 kcal (2) G-P(sol) polarization free energy of solvation -87.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds