Wall clock time and date at job start Tue Mar 31 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99978 * 2 1 4 4 C 1.52997 * 109.47308 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47379 * 58.94198 * 4 3 2 6 6 C 1.36944 * 120.00152 * 286.76427 * 5 4 3 7 7 H 1.08007 * 119.99478 * 23.03972 * 6 5 4 8 8 C 1.38811 * 120.00366 * 203.03956 * 6 5 4 9 9 N 1.31617 * 119.99766 * 29.66062 * 8 6 5 10 10 Si 1.86796 * 120.00012 * 209.66704 * 8 6 5 11 11 H 1.48494 * 109.47356 * 89.99922 * 10 8 6 12 12 H 1.48504 * 109.46698 * 209.99727 * 10 8 6 13 13 H 1.48502 * 109.47304 * 329.99249 * 10 8 6 14 14 C 1.46500 * 120.00247 * 106.76253 * 5 4 3 15 15 C 1.50697 * 109.47152 * 266.87392 * 14 5 4 16 16 C 1.38683 * 120.78805 * 258.85022 * 15 14 5 17 17 C 1.38153 * 119.21641 * 179.77860 * 16 15 14 18 18 N 1.31901 * 120.83577 * 0.50629 * 17 16 15 19 19 C 1.31920 * 121.73467 * 359.74224 * 18 17 16 20 20 Cl 1.73594 * 119.65665 * 179.97438 * 19 18 17 21 21 C 1.38631 * 120.69491 * 359.97438 * 19 18 17 22 22 F 1.35095 * 120.45398 * 180.02562 * 21 19 18 23 23 H 1.09001 * 109.46878 * 60.00799 * 1 2 3 24 24 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47485 * 300.00985 * 1 2 3 26 26 H 1.09002 * 109.47493 * 59.99266 * 3 2 1 27 27 H 1.09003 * 109.46807 * 299.99093 * 3 2 1 28 28 H 1.09007 * 109.46956 * 298.94338 * 4 3 2 29 29 H 1.08994 * 109.47538 * 178.94732 * 4 3 2 30 30 H 0.96994 * 119.99977 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.46563 * 26.87217 * 14 5 4 32 32 H 1.09002 * 109.47032 * 146.87176 * 14 5 4 33 33 H 1.08003 * 120.39445 * 359.97438 * 16 15 14 34 34 H 1.08001 * 119.58063 * 180.23035 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9665 0.4356 -1.1822 6 6 3.7649 -0.9174 -1.2469 7 1 2.9928 -1.3775 -0.6481 8 6 4.5529 -1.6974 -2.0821 9 7 5.7894 -1.3337 -2.3489 10 14 3.8583 -3.2631 -2.8274 11 1 3.2215 -2.9502 -4.1319 12 1 4.9558 -4.2418 -3.0345 13 1 2.8457 -3.8420 -1.9083 14 6 4.6133 1.1338 -2.2959 15 6 3.5744 1.5236 -3.3156 16 6 3.4051 0.7825 -4.4755 17 6 2.4398 1.1665 -5.3862 18 7 1.6899 2.2296 -5.1688 19 6 1.8243 2.9627 -4.0803 20 17 0.8089 4.3516 -3.8493 21 6 2.7680 2.6356 -3.1189 22 9 2.9011 3.3894 -2.0057 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 1.6885 1.8465 0.8899 27 1 1.6887 1.8463 -0.8901 28 1 3.8580 0.6604 0.9002 29 1 3.9788 2.1802 -0.0182 30 1 6.3399 -1.8786 -2.9327 31 1 5.1108 2.0293 -1.9234 32 1 5.3485 0.4759 -2.7594 33 1 4.0185 -0.0864 -4.6632 34 1 2.3004 0.5914 -6.2897 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835067747.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:52 Heat of formation + Delta-G solvation = -31.992148 kcal Electronic energy + Delta-G solvation = -21870.316215 eV Core-core repulsion = 18359.076863 eV Total energy + Delta-G solvation = -3511.239353 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.60354 -39.69821 -37.46847 -36.50830 -35.67631 -32.37795 -31.71227 -30.30599 -28.66832 -26.33494 -25.83962 -23.58920 -23.12660 -21.90252 -20.39972 -17.36440 -17.31605 -16.70180 -16.26644 -15.94419 -15.57217 -15.22087 -14.56698 -14.38490 -14.19119 -13.58794 -13.51868 -13.50097 -13.25729 -12.68065 -12.23233 -11.97055 -11.52962 -11.41759 -11.31358 -11.14854 -11.01380 -10.86386 -10.55742 -10.30596 -10.17106 -10.00494 -9.42658 -9.10472 -8.90205 -8.60838 -8.50300 -6.91541 -5.91050 -3.29706 1.15150 1.44530 1.95438 3.32163 3.42056 3.45867 3.86211 4.34978 4.42582 4.48126 4.72628 5.08825 5.18366 5.31260 5.38336 5.63188 5.68548 5.72674 5.85803 5.96975 5.98388 6.03429 6.12137 6.27692 6.33610 6.35972 6.71369 6.84092 6.89810 7.46866 7.82609 7.90237 7.91863 8.30508 9.06974 9.69019 10.16879 11.09606 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.007872 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.651709 B = 3556.031054 C = 4248.074045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.360 6.360 3 C 0.044 3.956 4 C 0.145 3.855 5 N -0.565 5.565 6 C -0.226 4.226 7 H 0.090 0.910 8 C -0.007 4.007 9 N -0.888 5.888 10 Si 0.889 3.111 11 H -0.287 1.287 12 H -0.293 1.293 13 H -0.277 1.277 14 C 0.150 3.850 15 C -0.046 4.046 16 C -0.124 4.124 17 C 0.097 3.903 18 N -0.473 5.473 19 C 0.132 3.868 20 Cl -0.039 7.039 21 C 0.063 3.937 22 F -0.123 7.123 23 H 0.030 0.970 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.031 0.969 27 H 0.038 0.962 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.256 0.744 31 H 0.044 0.956 32 H 0.138 0.862 33 H 0.148 0.852 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.676 7.000 -1.674 9.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C -0.035 4.035 4 C 0.018 3.982 5 N -0.282 5.282 6 C -0.355 4.355 7 H 0.107 0.893 8 C -0.204 4.204 9 N -0.532 5.532 10 Si 0.719 3.281 11 H -0.214 1.214 12 H -0.220 1.220 13 H -0.202 1.202 14 C 0.024 3.976 15 C -0.058 4.058 16 C -0.145 4.145 17 C -0.060 4.060 18 N -0.185 5.185 19 C -0.033 4.033 20 Cl -0.011 7.011 21 C 0.040 3.960 22 F -0.101 7.101 23 H 0.049 0.951 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.155 0.845 33 H 0.166 0.834 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.120 7.102 -2.232 9.637 hybrid contribution -0.395 -0.493 0.226 0.672 sum -6.515 6.608 -2.005 9.494 Atomic orbital electron populations 1.22638 0.83688 1.01708 0.98670 1.88158 1.17245 1.27459 1.94977 1.23376 0.97454 0.84565 0.98104 1.21007 0.90154 0.95743 0.91300 1.43897 1.68498 1.04236 1.11544 1.19577 1.11691 0.81719 1.22544 0.89288 1.24790 0.94468 0.97915 1.03258 1.69891 1.05041 1.39585 1.38725 0.86447 0.78619 0.83093 0.79961 1.21376 1.21971 1.20216 1.20591 0.92753 0.97250 0.87056 1.22024 0.98141 0.89492 0.96180 1.22170 0.98854 1.00478 0.93026 1.22619 0.91635 0.92147 0.99561 1.66927 1.25998 1.06471 1.19083 1.21612 0.94627 0.93674 0.93377 1.98372 1.67870 1.38843 1.96020 1.18204 0.98997 0.93782 0.85064 1.91469 1.94868 1.74412 1.49371 0.95140 0.90463 0.95301 0.95135 0.94329 0.93014 0.91955 0.93405 0.93780 0.84524 0.83399 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.35 8.23 -35.23 -0.29 -7.64 16 3 C 0.04 0.83 6.18 37.16 0.23 1.06 16 4 C 0.14 2.91 5.85 -4.05 -0.02 2.88 16 5 N -0.56 -13.00 2.57 -174.61 -0.45 -13.45 16 6 C -0.23 -5.78 8.90 -15.06 -0.13 -5.92 16 7 H 0.09 2.39 6.25 -52.48 -0.33 2.06 16 8 C -0.01 -0.17 4.93 -17.43 -0.09 -0.26 16 9 N -0.89 -23.11 11.01 55.49 0.61 -22.49 16 10 Si 0.89 20.54 29.64 -169.99 -5.04 15.50 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.15 3.24 5.25 -5.19 -0.03 3.21 16 15 C -0.05 -0.90 5.49 -104.27 -0.57 -1.47 16 16 C -0.12 -2.27 9.77 -39.45 -0.39 -2.65 16 17 C 0.10 1.59 11.18 -17.55 -0.20 1.39 16 18 N -0.47 -8.37 10.34 -10.31 -0.11 -8.48 16 19 C 0.13 2.37 7.28 -17.37 -0.13 2.24 16 20 Cl -0.04 -0.62 28.78 -51.86 -1.49 -2.11 16 21 C 0.06 1.18 6.43 -39.24 -0.25 0.93 16 22 F -0.12 -2.23 14.05 2.25 0.03 -2.19 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.76 5.81 -51.93 -0.30 0.45 16 28 H 0.05 1.07 8.14 -51.92 -0.42 0.64 16 29 H 0.06 1.14 7.36 -51.93 -0.38 0.76 16 30 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 31 H 0.04 0.90 7.68 -51.93 -0.40 0.50 16 32 H 0.14 3.26 4.80 -51.93 -0.25 3.01 16 33 H 0.15 2.73 8.06 -52.48 -0.42 2.31 16 34 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -27.22 305.23 -6.35 -33.57 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -3.75 Total: -0.31 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.46 Total: 3.01 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.06 Total: -44.43 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.29 Total: -7.64 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.03 Total: -2.19 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.04 Total: 15.50 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.49 Total: -2.11 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.22 -6.35 -33.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835067747.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.578 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds