Wall clock time and date at job start Tue Mar 31 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99978 * 2 1 4 4 C 1.52997 * 109.47308 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47379 * 58.94198 * 4 3 2 6 6 C 1.36944 * 120.00152 * 286.76427 * 5 4 3 7 7 H 1.08007 * 119.99478 * 23.03972 * 6 5 4 8 8 C 1.38811 * 120.00366 * 203.03956 * 6 5 4 9 9 N 1.31617 * 119.99766 * 29.66062 * 8 6 5 10 10 Si 1.86796 * 120.00012 * 209.66704 * 8 6 5 11 11 H 1.48494 * 109.47356 * 89.99922 * 10 8 6 12 12 H 1.48504 * 109.46698 * 209.99727 * 10 8 6 13 13 H 1.48502 * 109.47304 * 329.99249 * 10 8 6 14 14 C 1.46500 * 120.00247 * 106.76253 * 5 4 3 15 15 C 1.50697 * 109.47152 * 266.87392 * 14 5 4 16 16 C 1.38683 * 120.78805 * 258.85022 * 15 14 5 17 17 C 1.38153 * 119.21641 * 179.77860 * 16 15 14 18 18 N 1.31901 * 120.83577 * 0.50629 * 17 16 15 19 19 C 1.31920 * 121.73467 * 359.74224 * 18 17 16 20 20 Cl 1.73594 * 119.65665 * 179.97438 * 19 18 17 21 21 C 1.38631 * 120.69491 * 359.97438 * 19 18 17 22 22 F 1.35095 * 120.45398 * 180.02562 * 21 19 18 23 23 H 1.09001 * 109.46878 * 60.00799 * 1 2 3 24 24 H 1.08998 * 109.47184 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47485 * 300.00985 * 1 2 3 26 26 H 1.09002 * 109.47493 * 59.99266 * 3 2 1 27 27 H 1.09003 * 109.46807 * 299.99093 * 3 2 1 28 28 H 1.09007 * 109.46956 * 298.94338 * 4 3 2 29 29 H 1.08994 * 109.47538 * 178.94732 * 4 3 2 30 30 H 0.96994 * 119.99977 * 180.02562 * 9 8 6 31 31 H 1.09001 * 109.46563 * 26.87217 * 14 5 4 32 32 H 1.09002 * 109.47032 * 146.87176 * 14 5 4 33 33 H 1.08003 * 120.39445 * 359.97438 * 16 15 14 34 34 H 1.08001 * 119.58063 * 180.23035 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9665 0.4356 -1.1822 6 6 3.7649 -0.9174 -1.2469 7 1 2.9928 -1.3775 -0.6481 8 6 4.5529 -1.6974 -2.0821 9 7 5.7894 -1.3337 -2.3489 10 14 3.8583 -3.2631 -2.8274 11 1 3.2215 -2.9502 -4.1319 12 1 4.9558 -4.2418 -3.0345 13 1 2.8457 -3.8420 -1.9083 14 6 4.6133 1.1338 -2.2959 15 6 3.5744 1.5236 -3.3156 16 6 3.4051 0.7825 -4.4755 17 6 2.4398 1.1665 -5.3862 18 7 1.6899 2.2296 -5.1688 19 6 1.8243 2.9627 -4.0803 20 17 0.8089 4.3516 -3.8493 21 6 2.7680 2.6356 -3.1189 22 9 2.9011 3.3894 -2.0057 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8898 26 1 1.6885 1.8465 0.8899 27 1 1.6887 1.8463 -0.8901 28 1 3.8580 0.6604 0.9002 29 1 3.9788 2.1802 -0.0182 30 1 6.3399 -1.8786 -2.9327 31 1 5.1108 2.0293 -1.9234 32 1 5.3485 0.4759 -2.7594 33 1 4.0185 -0.0864 -4.6632 34 1 2.3004 0.5914 -6.2897 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835067747.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:51 Heat of formation + Delta-G solvation = -47.085232 kcal Electronic energy + Delta-G solvation = -21870.970701 eV Core-core repulsion = 18359.076863 eV Total energy + Delta-G solvation = -3511.893838 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.03510 -41.11636 -38.98471 -37.85573 -37.28471 -33.94495 -33.47255 -31.70349 -30.24936 -28.04436 -27.20955 -25.25000 -24.54175 -23.39325 -22.06968 -19.02075 -18.76540 -18.18953 -17.72864 -17.46045 -17.09456 -16.70087 -16.28086 -15.86540 -15.56873 -15.26646 -15.08946 -14.94584 -14.78867 -14.18664 -13.69493 -13.45396 -13.14960 -12.86069 -12.74923 -12.71140 -12.58787 -12.44760 -12.10395 -12.01452 -11.94366 -11.76525 -10.85969 -10.59959 -10.46774 -10.36116 -9.88547 -8.74217 -7.79861 -5.22522 -0.25362 -0.00104 0.60032 1.48144 1.54325 1.61051 2.44238 2.59547 2.92188 3.08086 3.22440 3.41263 3.69420 3.71562 3.88287 4.19650 4.34945 4.40059 4.47446 4.53786 4.58669 4.63043 4.70476 4.77600 4.84634 4.86838 5.16351 5.27499 5.46415 5.70985 5.95319 6.38996 6.51576 6.52678 7.18580 7.85967 8.31725 9.18051 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.007872 C = 0.006590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.651709 B = 3556.031054 C = 4248.074045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.052 3.948 4 C 0.141 3.859 5 N -0.578 5.578 6 C -0.231 4.231 7 H 0.073 0.927 8 C -0.038 4.038 9 N -0.910 5.910 10 Si 0.933 3.067 11 H -0.277 1.277 12 H -0.298 1.298 13 H -0.285 1.285 14 C 0.155 3.845 15 C -0.057 4.057 16 C -0.131 4.131 17 C 0.110 3.890 18 N -0.476 5.476 19 C 0.128 3.872 20 Cl -0.019 7.019 21 C 0.058 3.942 22 F -0.122 7.122 23 H 0.029 0.971 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.031 0.969 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.254 0.746 31 H 0.048 0.952 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 7.656 -2.428 10.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C -0.026 4.026 4 C 0.016 3.984 5 N -0.296 5.296 6 C -0.361 4.361 7 H 0.090 0.910 8 C -0.234 4.234 9 N -0.556 5.556 10 Si 0.763 3.237 11 H -0.203 1.203 12 H -0.225 1.225 13 H -0.210 1.210 14 C 0.029 3.971 15 C -0.069 4.069 16 C -0.152 4.152 17 C -0.047 4.047 18 N -0.187 5.187 19 C -0.037 4.037 20 Cl 0.010 6.990 21 C 0.035 3.965 22 F -0.100 7.100 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.134 0.866 33 H 0.161 0.839 34 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.574 7.788 -2.990 11.267 hybrid contribution 0.001 -0.606 0.465 0.764 sum -7.573 7.182 -2.525 10.738 Atomic orbital electron populations 1.22795 0.81615 1.02783 0.99744 1.88101 1.19613 1.28328 1.95217 1.23229 0.96207 0.84311 0.98891 1.21109 0.91430 0.95970 0.89932 1.43988 1.68805 1.03827 1.12999 1.19517 1.11015 0.83101 1.22479 0.90973 1.25180 0.94608 0.99775 1.03808 1.69980 1.05625 1.40459 1.39520 0.85785 0.77610 0.80833 0.79522 1.20343 1.22501 1.21022 1.20375 0.92867 0.96686 0.87210 1.21838 0.97869 0.90595 0.96640 1.22243 0.99512 1.00249 0.93215 1.23166 0.89967 0.91510 1.00008 1.67089 1.26095 1.06728 1.18833 1.21778 0.94583 0.94226 0.93098 1.98378 1.67082 1.37592 1.95956 1.18163 0.99264 0.93680 0.85424 1.91465 1.94896 1.74302 1.49354 0.95232 0.89520 0.92908 0.92504 0.95091 0.94189 0.90462 0.93661 0.93389 0.86607 0.83868 0.78082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.39 -15.73 8.23 -148.98 -1.23 -16.95 16 3 C 0.05 1.91 6.18 71.98 0.44 2.35 16 4 C 0.14 5.65 5.85 86.38 0.51 6.15 16 5 N -0.58 -26.72 2.57 -706.34 -1.81 -28.53 16 6 C -0.23 -11.93 8.90 84.03 0.75 -11.19 16 7 H 0.07 3.94 6.25 -2.91 -0.02 3.92 16 8 C -0.04 -1.95 4.93 84.86 0.42 -1.53 16 9 N -0.91 -47.95 11.01 21.65 0.24 -47.71 16 10 Si 0.93 42.20 29.64 68.60 2.03 44.24 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 14 C 0.16 6.71 5.25 85.63 0.45 7.16 16 15 C -0.06 -2.22 5.49 -19.63 -0.11 -2.33 16 16 C -0.13 -4.63 9.77 22.36 0.22 -4.41 16 17 C 0.11 3.31 11.18 84.66 0.95 4.26 16 18 N -0.48 -15.60 10.34 -186.53 -1.93 -17.53 16 19 C 0.13 4.32 7.28 84.77 0.62 4.94 16 20 Cl -0.02 -0.54 28.78 -2.72 -0.08 -0.62 16 21 C 0.06 2.10 6.43 22.49 0.14 2.25 16 22 F -0.12 -4.25 14.05 44.97 0.63 -3.62 16 23 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.03 1.17 5.81 -2.39 -0.01 1.16 16 28 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.08 2.78 7.36 -2.39 -0.02 2.76 16 30 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 31 H 0.05 1.97 7.68 -2.39 -0.02 1.95 16 32 H 0.12 5.62 4.80 -2.39 -0.01 5.61 16 33 H 0.14 5.19 8.06 -2.91 -0.02 5.17 16 34 H 0.20 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -57.10 305.23 4.62 -52.48 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.13 Total: 8.52 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.63 Total: 9.73 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -3.50 Total: -93.77 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -1.23 Total: -16.95 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.63 Total: -3.62 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -57.10 4.62 -52.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835067747.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.400 kcal (2) G-P(sol) polarization free energy of solvation -57.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds