Wall clock time and date at job start Tue Mar 31 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45194 * 109.46990 * 2 1 4 4 C 1.34230 * 117.00273 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99309 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00364 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47274 * 55.00242 * 6 4 3 8 8 O 1.45206 * 109.47034 * 174.99676 * 6 4 3 9 9 C 1.34233 * 117.00031 * 210.00050 * 8 6 4 10 10 O 1.20823 * 119.99690 * 0.02562 * 9 8 6 11 11 C 1.50701 * 119.99656 * 180.02562 * 9 8 6 12 12 S 1.81008 * 109.46831 * 179.97438 * 11 9 8 13 13 C 1.76197 * 99.99996 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99868 * 359.97438 * 13 12 11 15 15 C 1.38793 * 120.00106 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00217 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00122 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47396 * 90.00005 * 17 15 13 19 19 H 1.48508 * 109.46814 * 209.99756 * 17 15 13 20 20 H 1.48497 * 109.47144 * 329.99405 * 17 15 13 21 21 C 1.53003 * 109.47251 * 294.99700 * 6 4 3 22 22 C 1.53000 * 117.49792 * 179.97438 * 21 6 4 23 23 C 1.53002 * 60.02940 * 107.48056 * 22 21 6 24 24 H 1.09002 * 109.47226 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46993 * 299.99629 * 1 2 3 26 26 H 1.08998 * 109.47210 * 59.99565 * 1 2 3 27 27 H 1.09000 * 109.46993 * 240.00371 * 2 1 3 28 28 H 1.08998 * 109.47210 * 120.00435 * 2 1 3 29 29 H 1.08997 * 109.47033 * 299.99249 * 11 9 8 30 30 H 1.08999 * 109.47216 * 60.00116 * 11 9 8 31 31 H 0.96994 * 120.00338 * 180.02562 * 16 15 13 32 32 H 1.08999 * 115.54778 * 34.33310 * 21 6 4 33 33 H 1.09002 * 117.49833 * 214.98161 * 22 21 6 34 34 H 1.09002 * 117.49953 * 359.97438 * 22 21 6 35 35 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 36 36 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5153 3.4979 0.8424 8 8 5.3660 2.8633 0.1187 9 6 5.9800 3.8857 0.7347 10 8 5.3313 4.8115 1.1611 11 6 7.4785 3.8786 0.8945 12 16 8.0004 5.3815 1.7577 13 6 9.7417 5.1172 1.8069 14 1 10.1645 4.2226 1.3740 15 6 10.5699 6.0581 2.4028 16 7 10.0546 7.1482 2.9309 17 14 12.4161 5.7782 2.4544 18 1 13.0396 6.3635 1.2404 19 1 12.9817 6.4284 3.6638 20 1 12.6946 4.3203 2.5001 21 6 3.5517 3.6425 -1.3068 22 6 4.0467 5.0773 -1.4995 23 6 4.6830 3.9358 -2.2953 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 7.7781 3.0045 1.4727 30 1 7.9486 3.8427 -0.0883 31 1 10.6334 7.8059 3.3471 32 1 2.5755 3.3875 -1.7191 33 1 3.3965 5.7658 -2.0393 34 1 4.6349 5.5191 -0.6952 35 1 4.4514 3.8734 -3.3586 36 1 5.6896 3.6265 -2.0143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835813298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:31 Heat of formation + Delta-G solvation = -144.876612 kcal Electronic energy + Delta-G solvation = -20498.115556 eV Core-core repulsion = 17075.192426 eV Total energy + Delta-G solvation = -3422.923130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.15998 -40.11288 -37.39313 -36.76795 -35.67518 -32.50936 -32.17929 -30.36659 -28.71534 -25.58037 -23.75732 -22.49310 -21.99654 -21.76149 -20.14293 -18.30476 -17.75747 -17.49995 -17.09034 -16.89985 -16.40029 -15.11637 -14.97720 -14.86413 -14.53439 -14.17896 -13.68781 -13.56664 -13.15322 -12.87382 -12.70101 -12.41916 -12.33597 -12.12121 -11.93074 -11.55802 -11.13534 -11.09515 -11.08427 -10.84921 -10.83801 -10.68504 -10.43421 -10.05784 -10.03299 -9.92457 -9.13685 -8.41258 -6.63961 -6.29879 -4.02940 1.78978 1.93095 2.46711 2.82611 3.19718 3.23840 3.28062 3.46603 3.68097 4.12471 4.24002 4.46571 4.59283 4.63579 4.73950 4.82022 4.90858 4.93089 5.06319 5.13382 5.22556 5.32405 5.42403 5.48379 5.61487 5.66669 5.71743 5.78754 6.01105 6.08770 6.11855 6.20907 6.44675 7.49471 7.53603 7.97410 8.28225 9.15975 10.77600 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.031258 B = 0.003327 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.556758 B = 8414.835497 C = 8765.052090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.473 3.527 5 O -0.483 6.483 6 C 0.130 3.870 7 H 0.127 0.873 8 O -0.332 6.332 9 C 0.481 3.519 10 O -0.478 6.478 11 C -0.128 4.128 12 S -0.054 6.054 13 C -0.537 4.537 14 H 0.077 0.923 15 C 0.075 3.925 16 N -0.867 5.867 17 Si 0.922 3.078 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.180 4.180 22 C -0.170 4.170 23 C -0.168 4.168 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.270 0.730 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.900 -10.734 -8.564 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.313 3.687 5 O -0.368 6.368 6 C 0.073 3.927 7 H 0.144 0.856 8 O -0.250 6.250 9 C 0.323 3.677 10 O -0.363 6.363 11 C -0.276 4.276 12 S 0.173 5.827 13 C -0.685 4.685 14 H 0.095 0.905 15 C -0.135 4.135 16 N -0.502 5.502 17 Si 0.748 3.252 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.196 1.196 21 C -0.199 4.199 22 C -0.207 4.207 23 C -0.205 4.205 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.117 0.883 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.508 -9.755 -7.941 21.558 hybrid contribution 1.775 -1.385 -0.386 2.284 sum -15.733 -11.140 -8.326 20.999 Atomic orbital electron populations 1.21815 0.92328 1.03078 1.03708 1.23096 0.95455 0.79722 1.02919 1.86465 1.23471 1.32865 1.84237 1.22990 0.81037 0.91470 0.73168 1.90707 1.60279 1.42430 1.43411 1.21244 0.80285 0.90351 1.00835 0.85595 1.86656 1.19527 1.47018 1.71817 1.23518 0.91424 0.79237 0.73505 1.90649 1.66366 1.34567 1.44767 1.23344 0.88287 1.08888 1.07083 1.85384 1.06704 1.17978 1.72673 1.22841 0.90998 1.09885 1.44735 0.90518 1.24999 0.99783 0.94357 0.94326 1.70002 1.36028 1.08874 1.35333 0.86116 0.82581 0.78641 0.77894 1.20159 1.20697 1.19556 1.22522 1.00615 1.00591 0.96139 1.23328 1.03521 0.90088 1.03748 1.23039 0.97922 1.02594 0.96921 0.90085 0.91296 0.91365 0.90989 0.90965 0.87609 0.87642 0.92032 0.85579 0.88066 0.86625 0.88257 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 37.16 0.38 -0.49 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.35 -3.97 10.19 -39.26 -0.40 -4.37 16 4 C 0.47 6.51 7.27 36.00 0.26 6.77 16 5 O -0.48 -7.99 16.26 -25.40 -0.41 -8.40 16 6 C 0.13 1.82 2.94 -27.88 -0.08 1.74 16 7 H 0.13 1.74 7.16 -51.93 -0.37 1.37 16 8 O -0.33 -5.52 7.94 -45.91 -0.36 -5.88 16 9 C 0.48 8.96 6.92 36.01 0.25 9.21 16 10 O -0.48 -9.69 12.91 -18.75 -0.24 -9.93 16 11 C -0.13 -2.58 6.27 36.01 0.23 -2.36 16 12 S -0.05 -1.39 20.58 -107.50 -2.21 -3.61 16 13 C -0.54 -14.88 9.50 30.94 0.29 -14.58 16 14 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 15 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -25.47 13.22 55.49 0.73 -24.73 16 17 Si 0.92 21.04 29.55 -169.99 -5.02 16.02 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 C -0.18 -2.15 5.69 -90.58 -0.52 -2.67 16 22 C -0.17 -2.14 9.85 -26.73 -0.26 -2.41 16 23 C -0.17 -2.04 9.80 -26.69 -0.26 -2.30 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 29 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 30 H 0.11 1.96 8.14 -51.92 -0.42 1.53 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.13 1.24 8.09 -51.93 -0.42 0.82 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.12 1.81 5.37 -51.93 -0.28 1.53 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.43 6.90 -51.93 -0.36 1.07 16 LS Contribution 329.07 15.07 4.96 4.96 Total: -1.00 -32.33 329.07 -7.32 -39.64 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.78 Total: 0.63 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 0.42 Total: -4.33 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.73 Total: -24.73 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -1.42 Total: -28.59 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.21 Total: -3.61 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.33 -7.32 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835813298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.232 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds