Wall clock time and date at job start Tue Mar 31 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45194 * 109.46990 * 2 1 4 4 C 1.34230 * 117.00273 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99309 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00364 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47274 * 55.00242 * 6 4 3 8 8 O 1.45206 * 109.47034 * 174.99676 * 6 4 3 9 9 C 1.34233 * 117.00031 * 210.00050 * 8 6 4 10 10 O 1.20823 * 119.99690 * 0.02562 * 9 8 6 11 11 C 1.50701 * 119.99656 * 180.02562 * 9 8 6 12 12 S 1.81008 * 109.46831 * 179.97438 * 11 9 8 13 13 C 1.76197 * 99.99996 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99868 * 359.97438 * 13 12 11 15 15 C 1.38793 * 120.00106 * 180.02562 * 13 12 11 16 16 N 1.31633 * 120.00217 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00122 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47396 * 90.00005 * 17 15 13 19 19 H 1.48508 * 109.46814 * 209.99756 * 17 15 13 20 20 H 1.48497 * 109.47144 * 329.99405 * 17 15 13 21 21 C 1.53003 * 109.47251 * 294.99700 * 6 4 3 22 22 C 1.53000 * 117.49792 * 179.97438 * 21 6 4 23 23 C 1.53002 * 60.02940 * 107.48056 * 22 21 6 24 24 H 1.09002 * 109.47226 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46993 * 299.99629 * 1 2 3 26 26 H 1.08998 * 109.47210 * 59.99565 * 1 2 3 27 27 H 1.09000 * 109.46993 * 240.00371 * 2 1 3 28 28 H 1.08998 * 109.47210 * 120.00435 * 2 1 3 29 29 H 1.08997 * 109.47033 * 299.99249 * 11 9 8 30 30 H 1.08999 * 109.47216 * 60.00116 * 11 9 8 31 31 H 0.96994 * 120.00338 * 180.02562 * 16 15 13 32 32 H 1.08999 * 115.54778 * 34.33310 * 21 6 4 33 33 H 1.09002 * 117.49833 * 214.98161 * 22 21 6 34 34 H 1.09002 * 117.49953 * 359.97438 * 22 21 6 35 35 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 36 36 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5153 3.4979 0.8424 8 8 5.3660 2.8633 0.1187 9 6 5.9800 3.8857 0.7347 10 8 5.3313 4.8115 1.1611 11 6 7.4785 3.8786 0.8945 12 16 8.0004 5.3815 1.7577 13 6 9.7417 5.1172 1.8069 14 1 10.1645 4.2226 1.3740 15 6 10.5699 6.0581 2.4028 16 7 10.0546 7.1482 2.9309 17 14 12.4161 5.7782 2.4544 18 1 13.0396 6.3635 1.2404 19 1 12.9817 6.4284 3.6638 20 1 12.6946 4.3203 2.5001 21 6 3.5517 3.6425 -1.3068 22 6 4.0467 5.0773 -1.4995 23 6 4.6830 3.9358 -2.2953 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 7.7781 3.0045 1.4727 30 1 7.9486 3.8427 -0.0883 31 1 10.6334 7.8059 3.3471 32 1 2.5755 3.3875 -1.7191 33 1 3.3965 5.7658 -2.0393 34 1 4.6349 5.5191 -0.6952 35 1 4.4514 3.8734 -3.3586 36 1 5.6896 3.6265 -2.0143 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835813298.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:30 Heat of formation + Delta-G solvation = -162.603594 kcal Electronic energy + Delta-G solvation = -20498.884256 eV Core-core repulsion = 17075.192426 eV Total energy + Delta-G solvation = -3423.691830 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.38952 -41.31995 -38.59567 -37.80355 -36.94870 -34.61912 -32.87826 -31.78810 -29.97613 -27.70842 -24.50302 -23.53446 -23.13060 -22.81995 -21.33163 -20.01384 -19.06700 -18.89103 -18.30940 -18.04497 -17.50813 -16.90292 -16.53406 -16.03018 -15.98386 -15.49537 -14.81191 -14.65941 -14.54517 -14.15605 -13.79344 -13.62644 -13.56131 -13.19037 -13.00600 -12.90786 -12.70061 -12.60277 -12.52826 -12.18509 -11.86194 -11.81526 -11.74665 -11.60868 -11.27598 -11.16635 -11.05615 -10.41235 -8.73948 -8.38522 -6.17744 0.56145 0.83350 0.97104 1.28342 1.42725 1.45125 1.56385 1.98440 2.22733 2.69147 2.96754 3.21151 3.27510 3.44036 3.60178 3.75048 3.94003 3.98578 4.03641 4.07559 4.11220 4.23269 4.32377 4.39454 4.74475 4.76092 4.87294 4.92234 5.03233 5.06294 5.08770 5.18828 5.32774 5.40799 6.17383 6.41834 6.54116 7.03692 8.70553 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.031258 B = 0.003327 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.556758 B = 8414.835497 C = 8765.052090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.346 6.346 4 C 0.482 3.518 5 O -0.515 6.515 6 C 0.121 3.879 7 H 0.127 0.873 8 O -0.332 6.332 9 C 0.492 3.508 10 O -0.498 6.498 11 C -0.111 4.111 12 S -0.121 6.121 13 C -0.551 4.551 14 H 0.084 0.916 15 C 0.018 3.982 16 N -0.908 5.908 17 Si 0.998 3.002 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.260 1.260 21 C -0.173 4.173 22 C -0.176 4.176 23 C -0.168 4.168 24 H 0.103 0.897 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.273 0.727 32 H 0.155 0.845 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.504 -12.067 -9.812 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.263 6.263 4 C 0.324 3.676 5 O -0.403 6.403 6 C 0.064 3.936 7 H 0.144 0.856 8 O -0.249 6.249 9 C 0.334 3.666 10 O -0.384 6.384 11 C -0.259 4.259 12 S 0.106 5.894 13 C -0.698 4.698 14 H 0.102 0.898 15 C -0.187 4.187 16 N -0.544 5.544 17 Si 0.819 3.181 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.184 1.184 21 C -0.191 4.191 22 C -0.213 4.213 23 C -0.205 4.205 24 H 0.121 0.879 25 H 0.087 0.913 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.082 0.918 32 H 0.173 0.827 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.145 0.855 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.149 -11.100 -9.199 23.178 hybrid contribution 1.801 -1.058 -0.033 2.089 sum -16.348 -12.158 -9.231 22.367 Atomic orbital electron populations 1.21846 0.89801 1.04631 1.03984 1.23462 0.97357 0.78267 1.03063 1.86472 1.21696 1.34692 1.83468 1.22842 0.81708 0.90704 0.72341 1.90697 1.61183 1.43240 1.45194 1.21550 0.78511 0.91212 1.02284 0.85587 1.86599 1.21425 1.45847 1.71071 1.23047 0.90816 0.79326 0.73393 1.90650 1.66666 1.35403 1.45708 1.23123 0.89723 1.05832 1.07232 1.85430 1.07264 1.22468 1.74234 1.23194 0.91501 1.10307 1.44829 0.89776 1.26074 1.05139 0.93878 0.93627 1.70144 1.38013 1.09962 1.36323 0.84962 0.75885 0.79037 0.78183 1.19192 1.20188 1.18423 1.22622 1.01805 0.99684 0.94969 1.23276 1.03930 0.90770 1.03290 1.23114 0.96987 1.01965 0.98431 0.87869 0.91296 0.90785 0.90598 0.91220 0.86390 0.85916 0.91783 0.82707 0.85627 0.89979 0.85508 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 71.98 0.74 -0.57 16 2 C 0.05 0.80 6.19 71.98 0.45 1.24 16 3 O -0.35 -7.22 10.19 -51.42 -0.52 -7.74 16 4 C 0.48 12.76 7.27 71.23 0.52 13.28 16 5 O -0.52 -16.70 16.26 28.31 0.46 -16.24 16 6 C 0.12 3.30 2.94 29.85 0.09 3.38 16 7 H 0.13 3.46 7.16 -2.39 -0.02 3.44 16 8 O -0.33 -10.94 7.94 -45.09 -0.36 -11.29 16 9 C 0.49 18.46 6.92 71.24 0.49 18.95 16 10 O -0.50 -20.60 12.91 21.97 0.28 -20.32 16 11 C -0.11 -4.47 6.27 71.24 0.45 -4.03 16 12 S -0.12 -6.43 20.58 -56.49 -1.16 -7.59 16 13 C -0.55 -30.73 9.50 67.95 0.65 -30.08 16 14 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 15 C 0.02 1.01 5.49 84.86 0.47 1.48 16 16 N -0.91 -54.20 13.22 21.65 0.29 -53.92 16 17 Si 1.00 42.90 29.55 68.60 2.03 44.93 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 21 C -0.17 -3.82 5.69 -10.77 -0.06 -3.88 16 22 C -0.18 -4.24 9.85 30.60 0.30 -3.94 16 23 C -0.17 -3.81 9.80 30.62 0.30 -3.51 16 24 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 1.14 8.13 -2.39 -0.02 1.12 16 28 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.12 4.47 8.14 -2.40 -0.02 4.45 16 30 H 0.12 4.51 8.14 -2.40 -0.02 4.49 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.16 2.54 8.09 -2.39 -0.02 2.52 16 33 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.08 2.61 5.37 -2.39 -0.01 2.60 16 35 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 2.25 6.90 -2.39 -0.02 2.24 16 Total: -1.00 -70.56 329.07 6.48 -64.08 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.09 Total: 15.77 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 4.38 Total: -7.67 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: 0.29 Total: -53.92 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -0.14 Total: -55.60 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -6.43 SS G_CDS: -1.16 Total: -7.59 kcal Total: -70.56 6.48 -64.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835813298.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.525 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds