Wall clock time and date at job start Tue Mar 31 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28474 * 124.93233 * 2 1 4 4 C 1.31824 * 110.14158 * 179.97438 * 3 2 1 5 5 C 1.47586 * 126.45862 * 179.97438 * 4 3 2 6 6 O 1.21494 * 119.99940 * 180.02562 * 5 4 3 7 7 O 1.34732 * 120.00087 * 0.02639 * 5 4 3 8 8 C 1.45200 * 116.99605 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46808 * 180.02562 * 8 7 5 10 10 O 1.42907 * 109.47188 * 65.00174 * 9 8 7 11 11 C 1.42902 * 114.00166 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47295 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99866 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00021 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00278 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99891 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47444 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47025 * 119.99963 * 16 14 12 19 19 H 1.48499 * 109.47241 * 239.99924 * 16 14 12 20 20 C 1.41523 * 107.07925 * 0.02562 * 4 3 2 21 21 C 1.35505 * 105.51775 * 359.97438 * 20 4 3 22 22 Cl 1.73600 * 126.43655 * 180.02562 * 21 20 4 23 23 H 1.09000 * 109.47340 * 90.02353 * 1 2 3 24 24 H 1.09005 * 109.46992 * 210.02844 * 1 2 3 25 25 H 1.09002 * 109.47446 * 330.02186 * 1 2 3 26 26 H 1.09006 * 109.47424 * 299.99500 * 8 7 5 27 27 H 1.08998 * 109.47557 * 60.00180 * 8 7 5 28 28 H 1.08999 * 109.47251 * 184.99586 * 9 8 7 29 29 H 1.08997 * 109.47259 * 304.99696 * 9 8 7 30 30 H 1.08997 * 109.46453 * 299.99854 * 11 10 9 31 31 H 1.09008 * 109.47044 * 59.99246 * 11 10 9 32 32 H 0.97004 * 120.00449 * 180.02562 * 15 14 12 33 33 H 1.08004 * 127.24634 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2006 1.0533 0.0000 4 6 3.4752 0.7167 0.0006 5 6 4.6262 1.6405 0.0002 6 8 5.7585 1.2002 0.0003 7 8 4.4212 2.9722 -0.0002 8 6 5.5997 3.8204 -0.0011 9 6 5.1708 5.2891 -0.0009 10 8 4.4917 5.5868 1.2208 11 6 4.0461 6.9408 1.3231 12 6 3.3471 7.1412 2.6430 13 1 3.2521 6.3169 3.3344 14 6 2.8288 8.3768 2.9679 15 7 2.9449 9.3806 2.1262 16 14 1.9616 8.6250 4.6036 17 1 1.9648 7.3496 5.3642 18 1 2.6705 9.6692 5.3862 19 1 0.5607 9.0538 4.3612 20 6 3.5317 -0.6974 0.0003 21 6 2.2416 -1.1117 0.0002 22 17 1.6870 -2.7568 0.0006 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3634 0.8902 0.5135 26 1 6.1952 3.6161 0.8887 27 1 6.1943 3.6153 -0.8913 28 1 6.0516 5.9248 -0.0910 29 1 4.5026 5.4727 -0.8422 30 1 4.9034 7.6110 1.2601 31 1 3.3544 7.1582 0.5091 32 1 2.5805 10.2500 2.3549 33 1 4.4169 -1.3162 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838162415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:34 Heat of formation + Delta-G solvation = -54.796139 kcal Electronic energy + Delta-G solvation = -19661.619216 eV Core-core repulsion = 16137.018219 eV Total energy + Delta-G solvation = -3524.600998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.02478 -40.02422 -37.34779 -37.01665 -35.96608 -33.94711 -32.74416 -30.97523 -30.11836 -28.05108 -26.86698 -24.21149 -22.40000 -21.97307 -21.87905 -20.55190 -18.35916 -17.29727 -16.95395 -16.52710 -16.28662 -16.07742 -15.24005 -14.67295 -14.58104 -14.47073 -14.28851 -13.56513 -13.44492 -13.07809 -12.90260 -12.61393 -12.42965 -12.11008 -11.94059 -11.40174 -11.11569 -10.93180 -10.86488 -10.76439 -10.56403 -10.34358 -10.02604 -9.58670 -9.38780 -9.08471 -8.84912 -8.18160 -6.09830 -4.11000 1.06018 1.12794 1.48310 2.04512 2.82088 3.04483 3.30211 3.36481 3.43613 3.91392 4.34862 4.59621 4.68386 4.77035 4.78580 4.95990 5.04292 5.19452 5.26700 5.26861 5.50379 5.80898 5.90619 5.95469 6.05284 6.14404 6.52236 7.08847 7.35680 7.43294 7.80992 7.86537 8.15503 8.56086 9.02283 9.53647 11.01865 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.003243 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.424384 B = 8630.706708 C = 9758.675253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.272 5.272 3 N -0.199 5.199 4 C 0.006 3.994 5 C 0.556 3.444 6 O -0.504 6.504 7 O -0.324 6.324 8 C 0.074 3.926 9 C 0.062 3.938 10 O -0.390 6.390 11 C 0.194 3.806 12 C -0.513 4.513 13 H 0.067 0.933 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.908 3.092 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.145 4.145 21 C 0.044 3.956 22 Cl 0.006 6.994 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.109 0.891 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.263 0.737 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 -22.746 -7.425 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.064 5.064 3 N -0.037 5.037 4 C -0.151 4.151 5 C 0.397 3.603 6 O -0.390 6.390 7 O -0.238 6.238 8 C 0.000 4.000 9 C -0.016 4.016 10 O -0.310 6.310 11 C 0.120 3.880 12 C -0.551 4.551 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.735 3.265 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.173 4.173 21 C -0.105 4.105 22 Cl 0.034 6.966 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -3.979 -21.997 -7.293 23.513 hybrid contribution 0.029 -0.339 0.558 0.653 sum -3.951 -22.336 -6.735 23.661 Atomic orbital electron populations 1.22380 0.72037 1.06383 1.05318 1.45849 1.08497 1.01502 1.50569 1.74013 1.02968 1.11070 1.15665 1.20636 0.90031 0.92007 1.12427 1.19400 0.86282 0.81772 0.72797 1.90849 1.23070 1.78574 1.46549 1.86737 1.38531 1.15971 1.82560 1.23313 0.85233 0.88624 1.02794 1.22322 0.97267 0.91417 0.90573 1.87928 1.75309 1.33019 1.34743 1.20237 0.93633 0.76600 0.97534 1.21098 1.35707 0.96279 1.01996 0.91459 1.24944 0.96277 0.95474 0.97846 1.69970 1.46233 1.01739 1.35926 0.86282 0.79039 0.78259 0.82928 1.19475 1.20847 1.20838 1.21393 0.95709 0.93101 1.07129 1.22022 0.90921 0.83842 1.13709 1.98405 1.89710 1.11202 1.97330 0.88840 0.88294 0.87213 0.90192 0.90125 0.91793 0.93119 0.97600 0.97490 0.92721 0.80533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 11.16 59.85 0.67 1.15 16 2 N -0.27 -2.95 3.71 -64.74 -0.24 -3.19 16 3 N -0.20 -2.90 11.98 33.40 0.40 -2.50 16 4 C 0.01 0.09 7.16 -82.81 -0.59 -0.50 16 5 C 0.56 9.27 7.97 34.54 0.28 9.54 16 6 O -0.50 -8.71 16.71 -19.26 -0.32 -9.03 16 7 O -0.32 -5.91 10.20 -43.36 -0.44 -6.35 16 8 C 0.07 1.21 5.85 37.16 0.22 1.43 16 9 C 0.06 1.16 6.33 37.16 0.24 1.40 16 10 O -0.39 -9.71 10.30 -38.79 -0.40 -10.11 16 11 C 0.19 5.40 5.69 36.00 0.20 5.61 16 12 C -0.51 -15.37 9.43 -34.44 -0.32 -15.69 16 13 H 0.07 2.02 7.81 -52.48 -0.41 1.61 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.91 22.06 29.54 -169.99 -5.02 17.04 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.15 -1.70 10.79 -39.31 -0.42 -2.13 16 21 C 0.04 0.45 7.46 -16.86 -0.13 0.32 16 22 Cl 0.01 0.04 28.70 -51.86 -1.49 -1.45 16 23 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.10 0.39 7.74 -51.93 -0.40 -0.01 16 25 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -35.09 320.09 -5.67 -40.76 By element: Atomic # 1 Polarization: -2.55 SS G_CDS: -3.75 Total: -6.30 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 0.04 Total: 2.66 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.90 Total: -32.03 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.16 Total: -25.50 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.49 Total: -1.45 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.09 -5.67 -40.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838162415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.039 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds