Wall clock time and date at job start Tue Mar 31 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28474 * 124.93233 * 2 1 4 4 C 1.31824 * 110.14158 * 179.97438 * 3 2 1 5 5 C 1.47586 * 126.45862 * 179.97438 * 4 3 2 6 6 O 1.21494 * 119.99940 * 180.02562 * 5 4 3 7 7 O 1.34732 * 120.00087 * 0.02639 * 5 4 3 8 8 C 1.45200 * 116.99605 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46808 * 180.02562 * 8 7 5 10 10 O 1.42907 * 109.47188 * 65.00174 * 9 8 7 11 11 C 1.42902 * 114.00166 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47295 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99866 * 359.97438 * 12 11 10 14 14 C 1.37868 * 120.00021 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00278 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99891 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47444 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47025 * 119.99963 * 16 14 12 19 19 H 1.48499 * 109.47241 * 239.99924 * 16 14 12 20 20 C 1.41523 * 107.07925 * 0.02562 * 4 3 2 21 21 C 1.35505 * 105.51775 * 359.97438 * 20 4 3 22 22 Cl 1.73600 * 126.43655 * 180.02562 * 21 20 4 23 23 H 1.09000 * 109.47340 * 90.02353 * 1 2 3 24 24 H 1.09005 * 109.46992 * 210.02844 * 1 2 3 25 25 H 1.09002 * 109.47446 * 330.02186 * 1 2 3 26 26 H 1.09006 * 109.47424 * 299.99500 * 8 7 5 27 27 H 1.08998 * 109.47557 * 60.00180 * 8 7 5 28 28 H 1.08999 * 109.47251 * 184.99586 * 9 8 7 29 29 H 1.08997 * 109.47259 * 304.99696 * 9 8 7 30 30 H 1.08997 * 109.46453 * 299.99854 * 11 10 9 31 31 H 1.09008 * 109.47044 * 59.99246 * 11 10 9 32 32 H 0.97004 * 120.00449 * 180.02562 * 15 14 12 33 33 H 1.08004 * 127.24634 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2006 1.0533 0.0000 4 6 3.4752 0.7167 0.0006 5 6 4.6262 1.6405 0.0002 6 8 5.7585 1.2002 0.0003 7 8 4.4212 2.9722 -0.0002 8 6 5.5997 3.8204 -0.0011 9 6 5.1708 5.2891 -0.0009 10 8 4.4917 5.5868 1.2208 11 6 4.0461 6.9408 1.3231 12 6 3.3471 7.1412 2.6430 13 1 3.2521 6.3169 3.3344 14 6 2.8288 8.3768 2.9679 15 7 2.9449 9.3806 2.1262 16 14 1.9616 8.6250 4.6036 17 1 1.9648 7.3496 5.3642 18 1 2.6705 9.6692 5.3862 19 1 0.5607 9.0538 4.3612 20 6 3.5317 -0.6974 0.0003 21 6 2.2416 -1.1117 0.0002 22 17 1.6870 -2.7568 0.0006 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5143 25 1 -0.3634 0.8902 0.5135 26 1 6.1952 3.6161 0.8887 27 1 6.1943 3.6153 -0.8913 28 1 6.0516 5.9248 -0.0910 29 1 4.5026 5.4727 -0.8422 30 1 4.9034 7.6110 1.2601 31 1 3.3544 7.1582 0.5091 32 1 2.5805 10.2500 2.3549 33 1 4.4169 -1.3162 0.0010 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838162415.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:34 Heat of formation + Delta-G solvation = -78.427128 kcal Electronic energy + Delta-G solvation = -19662.643933 eV Core-core repulsion = 16137.018219 eV Total energy + Delta-G solvation = -3525.625714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.93123 -41.32622 -38.74857 -38.05008 -37.46679 -34.96093 -34.75307 -31.99877 -31.56166 -29.24113 -28.63912 -25.31696 -24.53128 -23.37569 -22.79067 -21.68296 -19.34827 -18.71687 -18.41150 -18.06382 -17.58668 -17.30231 -16.94114 -16.37106 -16.21005 -15.58004 -15.25065 -15.14437 -14.47697 -14.25549 -13.88827 -13.74351 -13.58283 -13.23836 -13.20221 -12.90640 -12.83801 -12.72775 -12.48114 -12.11754 -12.01807 -11.81610 -11.75597 -11.27090 -10.90476 -10.47334 -10.27177 -10.24271 -8.32836 -6.44916 0.04306 0.28619 0.60890 1.16570 1.39584 1.41129 1.55954 1.79825 1.88260 2.34438 3.00634 3.00882 3.07652 3.68335 3.92048 3.95689 4.11410 4.20526 4.26108 4.28908 4.42445 4.51085 4.58054 4.66192 4.85129 4.95402 5.16786 5.22818 5.28575 5.54026 5.94892 6.34328 6.50118 6.67141 6.79621 7.26689 8.79700 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.018387 B = 0.003243 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.424384 B = 8630.706708 C = 9758.675253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.263 5.263 3 N -0.233 5.233 4 C -0.023 4.023 5 C 0.556 3.444 6 O -0.516 6.516 7 O -0.347 6.347 8 C 0.076 3.924 9 C 0.053 3.947 10 O -0.410 6.410 11 C 0.208 3.792 12 C -0.550 4.550 13 H 0.058 0.942 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.983 3.017 17 H -0.267 1.267 18 H -0.269 1.269 19 H -0.270 1.270 20 C -0.150 4.150 21 C 0.053 3.947 22 Cl 0.037 6.963 23 H 0.115 0.885 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.088 0.912 29 H 0.055 0.945 30 H -0.006 1.006 31 H -0.012 1.012 32 H 0.272 0.728 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -24.100 -6.959 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.056 5.056 3 N -0.073 5.073 4 C -0.178 4.178 5 C 0.399 3.601 6 O -0.404 6.404 7 O -0.262 6.262 8 C 0.003 3.997 9 C -0.023 4.023 10 O -0.331 6.331 11 C 0.133 3.867 12 C -0.588 4.588 13 H 0.076 0.924 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.806 3.194 17 H -0.191 1.191 18 H -0.194 1.194 19 H -0.195 1.195 20 C -0.178 4.178 21 C -0.097 4.097 22 Cl 0.065 6.935 23 H 0.133 0.867 24 H 0.143 0.857 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.012 0.988 31 H 0.006 0.994 32 H 0.080 0.920 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.023 -23.362 -6.848 24.857 hybrid contribution 0.300 -0.035 0.327 0.445 sum -4.722 -23.396 -6.521 24.743 Atomic orbital electron populations 1.22835 0.69575 1.07722 1.07182 1.46253 1.09798 1.00948 1.48607 1.73937 1.03333 1.12937 1.17067 1.20603 0.89771 0.92861 1.14615 1.19696 0.86929 0.81299 0.72191 1.90818 1.23658 1.78548 1.47402 1.86720 1.39446 1.17101 1.82952 1.23353 0.85006 0.86911 1.04398 1.22666 0.97747 0.93586 0.88318 1.87873 1.76080 1.31189 1.37931 1.19873 0.92579 0.77948 0.96276 1.21409 1.37505 0.96850 1.02999 0.92388 1.25939 0.96438 0.94714 1.02008 1.70063 1.46470 1.02362 1.37924 0.85141 0.78140 0.78452 0.77691 1.19114 1.19448 1.19465 1.21609 0.97098 0.91903 1.07157 1.22127 0.90485 0.85062 1.12043 1.98423 1.89323 1.08592 1.97120 0.86701 0.85667 0.87224 0.90408 0.86613 0.89446 0.92723 0.98803 0.99398 0.91956 0.79061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 11.16 127.77 1.43 2.10 16 2 N -0.26 -5.41 3.71 -358.74 -1.33 -6.74 16 3 N -0.23 -6.81 11.98 -48.25 -0.58 -7.38 16 4 C -0.02 -0.69 7.16 42.42 0.30 -0.39 16 5 C 0.56 18.84 7.97 70.29 0.56 19.40 16 6 O -0.52 -17.93 16.71 19.86 0.33 -17.60 16 7 O -0.35 -12.92 10.20 -53.76 -0.55 -13.47 16 8 C 0.08 2.50 5.85 71.98 0.42 2.92 16 9 C 0.05 2.02 6.33 71.98 0.46 2.48 16 10 O -0.41 -20.98 10.30 -145.57 -1.50 -22.48 16 11 C 0.21 11.95 5.69 71.24 0.41 12.35 16 12 C -0.55 -33.65 9.43 25.60 0.24 -33.41 16 13 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 14 C 0.01 0.44 5.46 84.65 0.46 0.90 16 15 N -0.93 -56.16 13.29 21.44 0.28 -55.88 16 16 Si 0.98 44.98 29.54 68.60 2.03 47.01 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C -0.15 -3.39 10.79 22.45 0.24 -3.15 16 21 C 0.05 0.99 7.46 83.48 0.62 1.61 16 22 Cl 0.04 0.46 28.70 -2.72 -0.08 0.38 16 23 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.13 0.63 7.74 -2.38 -0.02 0.61 16 25 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 27 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 30 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.19 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -76.36 320.09 4.88 -71.48 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: 1.13 Total: -0.14 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.14 Total: 4.81 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -1.63 Total: -70.00 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -1.72 Total: -53.55 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -0.08 Total: 0.38 kcal Total: -76.36 4.88 -71.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838162415.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.944 kcal (2) G-P(sol) polarization free energy of solvation -76.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds