Wall clock time and date at job start Tue Mar 31 2020 06:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 C 1.38379 * 119.84326 * 59.72811 * 4 2 1 6 6 C 1.37932 * 120.15198 * 179.76642 * 5 4 2 7 7 C 1.39661 * 119.84448 * 0.48534 * 6 5 4 8 8 C 1.47663 * 120.15631 * 179.79537 * 7 6 5 9 9 O 1.21507 * 120.00171 * 179.97438 * 8 7 6 10 10 O 1.34736 * 119.99700 * 359.96904 * 8 7 6 11 11 C 1.34855 * 116.99802 * 180.02562 * 10 8 7 12 12 H 1.07996 * 120.00067 * 359.97438 * 11 10 8 13 13 C 1.38815 * 119.99493 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00409 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99546 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47334 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47272 * 119.99669 * 15 13 11 18 18 H 1.48508 * 109.47078 * 239.99615 * 15 13 11 19 19 C 1.39671 * 119.69566 * 359.76360 * 7 6 5 20 20 C 1.37933 * 119.84180 * 0.02562 * 19 7 6 21 21 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 22 22 F 1.39889 * 109.47380 * 59.99956 * 21 2 1 23 23 F 1.39906 * 109.46680 * 179.97438 * 21 2 1 24 24 F 1.39895 * 109.47052 * 299.99383 * 21 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 1.08001 * 119.92293 * 359.97438 * 5 4 2 29 29 H 1.08003 * 120.07695 * 180.24684 * 6 5 4 30 30 H 0.97000 * 120.00219 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.07980 * 179.97438 * 19 7 6 32 32 H 1.07996 * 119.92672 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6914 -2.0336 1.4491 6 6 2.1516 -2.6914 2.5707 7 6 2.9551 -2.0159 3.4919 8 6 3.4478 -2.7121 4.6973 9 8 4.1471 -2.1219 5.4967 10 8 3.1219 -4.0019 4.9107 11 6 3.6042 -4.5780 6.0307 12 1 4.2219 -4.0074 6.7083 13 6 3.3074 -5.9046 6.3118 14 7 2.5562 -6.5989 5.4869 15 14 3.9760 -6.7027 7.8627 16 1 4.7886 -5.7148 8.6171 17 1 2.8460 -7.1639 8.7087 18 1 4.8254 -7.8641 7.4951 19 6 3.2910 -0.6789 3.2675 20 6 2.8274 -0.0347 2.1394 21 6 2.0399 -0.7212 -1.2493 22 9 1.5736 -0.0618 -2.3915 23 9 3.4390 -0.7207 -1.2496 24 9 1.5737 -2.0402 -1.2493 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 1.0663 -2.5534 0.7381 29 1 1.8881 -3.7253 2.7381 30 1 2.3491 -7.5260 5.6832 31 1 3.9116 -0.1504 3.9760 32 1 3.0859 0.9992 1.9647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838326284.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:47 Heat of formation + Delta-G solvation = -235.099644 kcal Electronic energy + Delta-G solvation = -22396.667763 eV Core-core repulsion = 18292.531577 eV Total energy + Delta-G solvation = -4104.136186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -51.09603 -48.58946 -48.55858 -41.35584 -40.09093 -37.36221 -35.83505 -34.37779 -32.11497 -31.10082 -27.78019 -27.26305 -25.29097 -23.76662 -22.75735 -21.57619 -19.95522 -19.47595 -19.40033 -19.04167 -18.39133 -17.46338 -16.63266 -16.53726 -16.21595 -15.89058 -15.66067 -15.38017 -15.24607 -14.98023 -14.80015 -14.72327 -14.52730 -14.31141 -14.11600 -14.00196 -13.70181 -13.45329 -13.21393 -12.91839 -12.49016 -12.40813 -12.22538 -12.21677 -12.07975 -11.84829 -11.19080 -10.75686 -10.03360 -9.96761 -8.61218 -6.38598 -0.37603 0.33600 1.32287 1.32513 1.51546 1.61761 1.89677 2.07216 2.64756 2.65845 2.87770 2.92912 2.99654 3.13116 3.64480 3.75159 3.94721 4.04152 4.16279 4.34565 4.35515 4.58799 4.70567 4.82365 4.86729 5.00131 5.07075 5.23103 5.28616 5.34379 5.46418 5.75660 5.80667 6.54432 6.83223 7.66493 8.59546 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.031645 B = 0.003634 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.595013 B = 7703.558436 C = 8096.986332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 H 0.157 0.843 4 C -0.073 4.073 5 C -0.113 4.113 6 C -0.080 4.080 7 C -0.115 4.115 8 C 0.427 3.573 9 O -0.581 6.581 10 O -0.232 6.232 11 C -0.422 4.422 12 H 0.083 0.917 13 C -0.002 4.002 14 N -0.896 5.896 15 Si 1.021 2.979 16 H -0.264 1.264 17 H -0.257 1.257 18 H -0.258 1.258 19 C -0.072 4.072 20 C -0.094 4.094 21 C 0.452 3.548 22 F -0.180 7.180 23 F -0.191 7.191 24 F -0.188 7.188 25 H 0.065 0.935 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.119 0.881 30 H 0.282 0.718 31 H 0.135 0.865 32 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.357 13.936 -14.388 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 H 0.175 0.825 4 C -0.074 4.074 5 C -0.131 4.131 6 C -0.099 4.099 7 C -0.116 4.116 8 C 0.278 3.722 9 O -0.481 6.481 10 O -0.139 6.139 11 C -0.498 4.498 12 H 0.101 0.899 13 C -0.203 4.203 14 N -0.533 5.533 15 Si 0.839 3.161 16 H -0.188 1.188 17 H -0.181 1.181 18 H -0.182 1.182 19 C -0.090 4.090 20 C -0.111 4.111 21 C 0.398 3.602 22 F -0.161 7.161 23 F -0.172 7.172 24 F -0.169 7.169 25 H 0.084 0.916 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.169 0.831 29 H 0.137 0.863 30 H 0.091 0.909 31 H 0.153 0.847 32 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.277 13.824 -14.256 20.547 hybrid contribution 0.575 -0.974 0.686 1.323 sum -4.702 12.849 -13.570 19.271 Atomic orbital electron populations 1.21968 0.89113 1.04321 1.05454 1.21515 1.00723 1.01725 0.86154 0.82493 1.19810 0.97636 0.93784 0.96129 1.21329 1.00226 0.94803 0.96742 1.21457 0.94858 1.00135 0.93419 1.19420 1.02838 0.95744 0.93626 1.21870 0.80915 0.81975 0.87488 1.90566 1.40709 1.67854 1.48941 1.83919 1.64104 1.23810 1.42106 1.21572 1.33248 0.95979 0.98960 0.89912 1.26615 0.95866 0.94860 1.02938 1.70056 1.34907 1.10421 1.37873 0.84533 0.78611 0.77992 0.74970 1.18807 1.18113 1.18247 1.21343 0.97886 0.91590 0.98181 1.21271 0.96142 1.01650 0.92058 1.20815 0.75261 0.77687 0.86431 1.93177 1.88383 1.80564 1.54021 1.93194 1.30772 1.96408 1.96857 1.93140 1.88429 1.38737 1.96644 0.91637 0.88808 0.89149 0.83149 0.86305 0.90899 0.84672 0.80578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.76 71.98 0.63 -1.06 16 2 C -0.08 -1.15 2.60 -11.54 -0.03 -1.18 16 3 H 0.16 1.19 7.87 -2.39 -0.02 1.17 16 4 C -0.07 -1.58 4.53 -19.80 -0.09 -1.67 16 5 C -0.11 -3.11 8.34 22.23 0.19 -2.93 16 6 C -0.08 -2.99 9.62 22.54 0.22 -2.77 16 7 C -0.12 -4.81 5.87 -20.10 -0.12 -4.93 16 8 C 0.43 23.25 7.84 70.31 0.55 23.81 16 9 O -0.58 -33.69 15.59 19.81 0.31 -33.39 16 10 O -0.23 -14.21 8.99 11.29 0.10 -14.11 16 11 C -0.42 -26.31 9.65 67.96 0.66 -25.66 16 12 H 0.08 5.24 6.86 -2.91 -0.02 5.22 16 13 C 0.00 -0.10 5.50 84.89 0.47 0.37 16 14 N -0.90 -53.14 13.67 21.63 0.30 -52.84 16 15 Si 1.02 43.66 29.55 68.60 2.03 45.69 16 16 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 19 C -0.07 -2.33 9.60 22.54 0.22 -2.11 16 20 C -0.09 -2.08 9.65 22.23 0.21 -1.87 16 21 C 0.45 8.35 2.67 71.98 0.19 8.54 16 22 F -0.18 -3.09 16.80 44.97 0.76 -2.33 16 23 F -0.19 -4.25 17.03 44.97 0.77 -3.49 16 24 F -0.19 -4.11 14.20 44.97 0.64 -3.47 16 25 H 0.06 0.86 7.02 -2.39 -0.02 0.85 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.09 0.72 7.80 -2.39 -0.02 0.71 16 28 H 0.15 3.59 5.89 -2.91 -0.02 3.57 16 29 H 0.12 4.97 7.61 -2.91 -0.02 4.95 16 30 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.14 4.38 7.65 -2.91 -0.02 4.36 16 32 H 0.18 2.28 7.94 -2.91 -0.02 2.26 16 Total: -1.00 -75.89 296.85 9.16 -66.73 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.17 Total: 8.68 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 3.09 Total: -11.47 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.30 Total: -52.84 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: 0.41 Total: -47.50 kcal Atomic # 9 Polarization: -11.45 SS G_CDS: 2.16 Total: -9.29 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -75.89 9.16 -66.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838326284.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.368 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds