Wall clock time and date at job start Tue Mar 31 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00023 * 2 1 4 4 O 1.20822 * 119.99970 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99764 * 179.97438 * 3 2 1 6 6 C 1.53006 * 112.85317 * 309.66869 * 5 3 2 7 7 O 1.45201 * 109.46884 * 48.80620 * 6 5 3 8 8 C 1.34222 * 117.00137 * 179.97438 * 7 6 5 9 9 O 1.20833 * 119.99852 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00432 * 179.71953 * 8 7 6 11 11 S 1.80997 * 109.47482 * 180.27682 * 10 8 7 12 12 C 1.76202 * 100.00062 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99653 * 0.02562 * 12 11 10 14 14 C 1.38802 * 119.99986 * 180.02562 * 12 11 10 15 15 N 1.31632 * 119.99638 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99763 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47449 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47124 * 120.00365 * 16 14 12 19 19 H 1.48501 * 109.46741 * 239.99621 * 16 14 12 20 20 C 1.53785 * 113.68886 * 80.94192 * 5 3 2 21 21 C 1.53779 * 87.08221 * 89.12630 * 20 5 3 22 22 C 1.53779 * 87.08356 * 25.43015 * 21 20 5 23 23 H 1.08995 * 109.47146 * 59.99450 * 1 2 3 24 24 H 1.08996 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47128 * 299.99276 * 1 2 3 26 26 H 1.08997 * 109.46911 * 288.80579 * 6 5 3 27 27 H 1.08997 * 109.46745 * 168.80588 * 6 5 3 28 28 H 1.09000 * 109.47190 * 300.28287 * 10 8 7 29 29 H 1.09006 * 109.46468 * 60.27870 * 10 8 7 30 30 H 0.96999 * 119.99316 * 180.02562 * 15 14 12 31 31 H 1.09004 * 113.60990 * 203.67340 * 20 5 3 32 32 H 1.09001 * 113.61275 * 334.57364 * 20 5 3 33 33 H 1.08997 * 113.61076 * 270.88384 * 21 20 5 34 34 H 1.09000 * 113.61399 * 139.98263 * 21 20 5 35 35 H 1.08999 * 113.61931 * 220.01698 * 22 21 20 36 36 H 1.09000 * 113.61452 * 89.11753 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.2063 0.4073 1.0863 7 8 3.6324 -0.9257 1.0416 8 6 4.0896 -1.8164 1.9356 9 8 4.9410 -1.4928 2.7296 10 6 3.5363 -3.2180 1.9536 11 16 4.3419 -4.1679 3.2668 12 6 3.5298 -5.7186 3.0651 13 1 2.7824 -5.8405 2.2951 14 6 3.8505 -6.7832 3.8959 15 7 4.7618 -6.6346 4.8341 16 14 2.9900 -8.4273 3.6816 17 1 2.0156 -8.3342 2.5649 18 1 3.9956 -9.4762 3.3756 19 1 2.2743 -8.7783 4.9345 20 6 4.1955 1.0854 -1.3898 21 6 4.0629 2.6068 -1.5705 22 6 4.1078 2.7137 -0.0371 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 4.0183 0.8512 2.0639 27 1 5.2811 0.3460 0.9157 28 1 2.4625 -3.1824 2.1373 29 1 3.7248 -3.6953 0.9919 30 1 4.9861 -7.3788 5.4144 31 1 5.2281 0.7378 -1.3581 32 1 3.5744 0.5085 -2.0752 33 1 3.1102 2.9138 -2.0018 34 1 4.9197 3.0640 -2.0653 35 1 3.4161 3.4513 0.3697 36 1 5.1164 2.8112 0.3645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842429034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:55 Heat of formation + Delta-G solvation = -150.701368 kcal Electronic energy + Delta-G solvation = -20704.835493 eV Core-core repulsion = 17281.659782 eV Total energy + Delta-G solvation = -3423.175711 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.33125 -39.88642 -38.59256 -36.44906 -35.88657 -32.48622 -30.51197 -29.08863 -27.71835 -26.07484 -25.56235 -24.25156 -22.25680 -20.84922 -19.54716 -17.96582 -17.45241 -17.23060 -16.74986 -16.63500 -16.04812 -15.68311 -15.03036 -14.84969 -14.42615 -14.12317 -13.93457 -13.36321 -13.27630 -12.80340 -12.74612 -12.63795 -12.19171 -12.03447 -11.88489 -11.37467 -11.10089 -11.08105 -11.01769 -10.85666 -10.83372 -10.78223 -10.51995 -10.31613 -9.97185 -9.88145 -9.12475 -8.34794 -6.59974 -6.27642 -3.99917 1.96499 2.51748 2.61103 2.68380 3.19307 3.23266 3.28933 3.50003 4.05992 4.09232 4.14644 4.37273 4.41461 4.56668 4.99194 5.00532 5.07991 5.08396 5.13147 5.21212 5.31637 5.33668 5.40081 5.44865 5.57233 5.58837 5.67894 5.70328 5.80794 5.94993 6.10966 6.27114 6.67603 7.55641 7.60716 8.18940 8.30564 9.18110 10.79950 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.003529 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.212637 B = 7932.160892 C = 8539.501115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.329 6.329 3 C 0.491 3.509 4 O -0.509 6.509 5 C -0.086 4.086 6 C 0.082 3.918 7 O -0.344 6.344 8 C 0.479 3.521 9 O -0.491 6.491 10 C -0.126 4.126 11 S -0.061 6.061 12 C -0.535 4.535 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.921 3.079 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.279 1.279 20 C -0.116 4.116 21 C -0.143 4.143 22 C -0.112 4.112 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.269 0.731 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.085 16.128 -12.891 21.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.244 6.244 3 C 0.334 3.666 4 O -0.398 6.398 5 C -0.088 4.088 6 C 0.008 3.992 7 O -0.261 6.261 8 C 0.320 3.680 9 O -0.377 6.377 10 C -0.274 4.274 11 S 0.166 5.834 12 C -0.683 4.683 13 H 0.095 0.905 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.747 3.253 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.153 4.153 21 C -0.180 4.180 22 C -0.149 4.149 23 H 0.078 0.922 24 H 0.122 0.878 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.162 16.769 -11.769 20.730 hybrid contribution -1.660 -1.343 -0.826 2.290 sum -4.823 15.426 -12.596 20.491 Atomic orbital electron populations 1.23321 0.76570 1.04039 1.02160 1.86677 1.22815 1.31977 1.82903 1.22696 0.90445 0.81630 0.71871 1.90640 1.66762 1.36589 1.45802 1.21830 0.88822 0.99064 0.99039 1.22861 0.97889 0.80384 0.98100 1.86638 1.62782 1.21121 1.55583 1.23333 0.79830 0.87293 0.77505 1.90670 1.30002 1.79074 1.37977 1.23267 1.05256 0.91068 1.07782 1.85411 1.52828 1.07371 1.37833 1.22884 1.26962 0.96456 1.21970 0.90541 1.25004 0.95114 0.99049 0.94369 1.70024 1.29805 1.32263 1.18154 0.86073 0.79174 0.81731 0.78280 1.19501 1.20510 1.20532 1.23007 1.01939 0.97311 0.93091 1.22913 1.03029 0.96002 0.96096 1.22929 1.02148 0.92431 0.97394 0.92156 0.87756 0.91966 0.90683 0.89595 0.87967 0.87923 0.92143 0.88004 0.90232 0.89689 0.90255 0.89303 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.39 16 2 O -0.33 -4.30 8.91 -46.09 -0.41 -4.71 16 3 C 0.49 6.32 6.73 36.00 0.24 6.56 16 4 O -0.51 -7.26 15.58 -18.75 -0.29 -7.55 16 5 C -0.09 -0.92 1.16 -154.84 -0.18 -1.10 16 6 C 0.08 1.04 4.92 37.16 0.18 1.22 16 7 O -0.34 -5.39 8.45 -46.07 -0.39 -5.78 16 8 C 0.48 9.08 7.98 36.00 0.29 9.37 16 9 O -0.49 -10.62 15.61 -18.76 -0.29 -10.92 16 10 C -0.13 -2.55 6.27 36.00 0.23 -2.32 16 11 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 12 C -0.53 -14.91 9.50 30.94 0.29 -14.61 16 13 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 15 N -0.87 -25.65 13.22 55.49 0.73 -24.91 16 16 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 C -0.12 -1.00 7.22 -25.92 -0.19 -1.19 16 21 C -0.14 -1.09 7.75 -25.92 -0.20 -1.29 16 22 C -0.11 -0.94 7.02 -25.92 -0.18 -1.12 16 23 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.61 8.13 -51.92 -0.42 0.19 16 26 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 27 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 28 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 29 H 0.10 1.92 8.14 -51.91 -0.42 1.50 16 30 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.10 0.76 7.96 -51.93 -0.41 0.34 16 32 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.82 7.41 -51.93 -0.39 0.44 16 36 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -33.61 328.54 -6.46 -40.07 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.98 Total: -2.22 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 1.45 Total: -1.11 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.73 Total: -24.91 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.39 Total: -28.95 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.61 -6.46 -40.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842429034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.636 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds