Wall clock time and date at job start Tue Mar 31 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 117.00023 * 2 1 4 4 O 1.20822 * 119.99970 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99764 * 179.97438 * 3 2 1 6 6 C 1.53006 * 112.85317 * 309.66869 * 5 3 2 7 7 O 1.45201 * 109.46884 * 48.80620 * 6 5 3 8 8 C 1.34222 * 117.00137 * 179.97438 * 7 6 5 9 9 O 1.20833 * 119.99852 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00432 * 179.71953 * 8 7 6 11 11 S 1.80997 * 109.47482 * 180.27682 * 10 8 7 12 12 C 1.76202 * 100.00062 * 180.02562 * 11 10 8 13 13 H 1.07997 * 119.99653 * 0.02562 * 12 11 10 14 14 C 1.38802 * 119.99986 * 180.02562 * 12 11 10 15 15 N 1.31632 * 119.99638 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99763 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47449 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47124 * 120.00365 * 16 14 12 19 19 H 1.48501 * 109.46741 * 239.99621 * 16 14 12 20 20 C 1.53785 * 113.68886 * 80.94192 * 5 3 2 21 21 C 1.53779 * 87.08221 * 89.12630 * 20 5 3 22 22 C 1.53779 * 87.08356 * 25.43015 * 21 20 5 23 23 H 1.08995 * 109.47146 * 59.99450 * 1 2 3 24 24 H 1.08996 * 109.47157 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47128 * 299.99276 * 1 2 3 26 26 H 1.08997 * 109.46911 * 288.80579 * 6 5 3 27 27 H 1.08997 * 109.46745 * 168.80588 * 6 5 3 28 28 H 1.09000 * 109.47190 * 300.28287 * 10 8 7 29 29 H 1.09006 * 109.46468 * 60.27870 * 10 8 7 30 30 H 0.96999 * 119.99316 * 180.02562 * 15 14 12 31 31 H 1.09004 * 113.60990 * 203.67340 * 20 5 3 32 32 H 1.09001 * 113.61275 * 334.57364 * 20 5 3 33 33 H 1.08997 * 113.61076 * 270.88384 * 21 20 5 34 34 H 1.09000 * 113.61399 * 139.98263 * 21 20 5 35 35 H 1.08999 * 113.61931 * 220.01698 * 22 21 20 36 36 H 1.09000 * 113.61452 * 89.11753 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.2063 0.4073 1.0863 7 8 3.6324 -0.9257 1.0416 8 6 4.0896 -1.8164 1.9356 9 8 4.9410 -1.4928 2.7296 10 6 3.5363 -3.2180 1.9536 11 16 4.3419 -4.1679 3.2668 12 6 3.5298 -5.7186 3.0651 13 1 2.7824 -5.8405 2.2951 14 6 3.8505 -6.7832 3.8959 15 7 4.7618 -6.6346 4.8341 16 14 2.9900 -8.4273 3.6816 17 1 2.0156 -8.3342 2.5649 18 1 3.9956 -9.4762 3.3756 19 1 2.2743 -8.7783 4.9345 20 6 4.1955 1.0854 -1.3898 21 6 4.0629 2.6068 -1.5705 22 6 4.1078 2.7137 -0.0371 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 4.0183 0.8512 2.0639 27 1 5.2811 0.3460 0.9157 28 1 2.4625 -3.1824 2.1373 29 1 3.7248 -3.6953 0.9919 30 1 4.9861 -7.3788 5.4144 31 1 5.2281 0.7378 -1.3581 32 1 3.5744 0.5085 -2.0752 33 1 3.1102 2.9138 -2.0018 34 1 4.9197 3.0640 -2.0653 35 1 3.4161 3.4513 0.3697 36 1 5.1164 2.8112 0.3645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842429034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:54 Heat of formation + Delta-G solvation = -170.028789 kcal Electronic energy + Delta-G solvation = -20705.673593 eV Core-core repulsion = 17281.659782 eV Total energy + Delta-G solvation = -3424.013810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27458 -41.27482 -39.45723 -37.59410 -37.12363 -34.59476 -31.83815 -30.27257 -28.60925 -27.68389 -26.74170 -25.21079 -23.16311 -22.18886 -20.40501 -19.87502 -18.66880 -18.46872 -17.83026 -17.73419 -17.24558 -16.89959 -16.82921 -16.02186 -15.78288 -15.39984 -15.14793 -14.57177 -14.32124 -14.26806 -13.84697 -13.63593 -13.35018 -13.17060 -12.98684 -12.91239 -12.83258 -12.63876 -12.17129 -11.92271 -11.79182 -11.74575 -11.71583 -11.42681 -11.37215 -11.28132 -11.15967 -10.34960 -8.71320 -8.36158 -6.15274 0.95674 1.07455 1.16816 1.42428 1.43125 1.57277 1.66671 1.89765 2.25172 2.99155 3.19719 3.31015 3.34397 3.50508 3.67265 3.77836 3.97679 4.18529 4.24104 4.25724 4.29253 4.30536 4.46401 4.49157 4.69138 4.71151 4.76511 4.97036 4.98453 5.04327 5.23767 5.29698 5.41774 5.43204 6.20059 6.63333 6.73571 7.05999 8.73318 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.028072 B = 0.003529 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.212637 B = 7932.160892 C = 8539.501115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.346 6.346 3 C 0.486 3.514 4 O -0.529 6.529 5 C -0.094 4.094 6 C 0.078 3.922 7 O -0.335 6.335 8 C 0.489 3.511 9 O -0.522 6.522 10 C -0.106 4.106 11 S -0.138 6.138 12 C -0.546 4.546 13 H 0.086 0.914 14 C 0.016 3.984 15 N -0.910 5.910 16 Si 0.999 3.001 17 H -0.257 1.257 18 H -0.274 1.274 19 H -0.275 1.275 20 C -0.112 4.112 21 C -0.134 4.134 22 C -0.106 4.106 23 H 0.069 0.931 24 H 0.123 0.877 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.272 0.728 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.584 16.094 -14.566 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.261 6.261 3 C 0.330 3.670 4 O -0.419 6.419 5 C -0.095 4.095 6 C 0.004 3.996 7 O -0.251 6.251 8 C 0.331 3.669 9 O -0.411 6.411 10 C -0.254 4.254 11 S 0.089 5.911 12 C -0.694 4.694 13 H 0.104 0.896 14 C -0.189 4.189 15 N -0.546 5.546 16 Si 0.821 3.179 17 H -0.180 1.180 18 H -0.199 1.199 19 H -0.200 1.200 20 C -0.150 4.150 21 C -0.171 4.171 22 C -0.144 4.144 23 H 0.087 0.913 24 H 0.142 0.858 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.081 0.919 31 H 0.137 0.863 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.677 16.753 -13.469 21.809 hybrid contribution -1.551 -1.199 -0.365 1.994 sum -5.228 15.555 -13.834 21.463 Atomic orbital electron populations 1.23544 0.75239 1.05464 1.02463 1.86656 1.24379 1.32249 1.82777 1.23149 0.91341 0.81326 0.71219 1.90624 1.67406 1.37096 1.46808 1.22047 0.87494 1.00256 0.99713 1.23195 0.98994 0.78628 0.98831 1.86614 1.62406 1.22143 1.53963 1.22968 0.79145 0.87282 0.77466 1.90665 1.31454 1.79596 1.39393 1.23052 1.05254 0.91263 1.05850 1.85512 1.54818 1.09117 1.41694 1.23227 1.27097 0.96786 1.22300 0.89617 1.26101 0.95707 1.03287 0.93778 1.70172 1.31517 1.33677 1.19272 0.84896 0.78116 0.76224 0.78671 1.18011 1.19891 1.19995 1.23089 1.02493 0.98114 0.91258 1.22858 1.03510 0.95289 0.95493 1.23021 1.02885 0.90272 0.98174 0.91277 0.85831 0.92295 0.91186 0.87958 0.86381 0.86015 0.91889 0.86325 0.90611 0.90802 0.87829 0.90386 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.35 -8.69 8.91 -44.86 -0.40 -9.09 16 3 C 0.49 12.10 6.73 71.24 0.48 12.58 16 4 O -0.53 -14.86 15.58 21.98 0.34 -14.52 16 5 C -0.09 -1.86 1.16 -52.40 -0.06 -1.92 16 6 C 0.08 1.84 4.92 71.98 0.35 2.20 16 7 O -0.33 -10.02 8.45 -44.80 -0.38 -10.39 16 8 C 0.49 18.14 7.98 71.23 0.57 18.71 16 9 O -0.52 -22.57 15.61 21.94 0.34 -22.23 16 10 C -0.11 -4.19 6.27 71.23 0.45 -3.74 16 11 S -0.14 -7.43 20.57 -56.49 -1.16 -8.59 16 12 C -0.55 -30.37 9.50 67.95 0.65 -29.73 16 13 H 0.09 4.44 7.80 -2.91 -0.02 4.41 16 14 C 0.02 0.90 5.49 84.86 0.47 1.37 16 15 N -0.91 -54.49 13.22 21.65 0.29 -54.20 16 16 Si 1.00 42.59 29.55 68.60 2.03 44.62 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 C -0.11 -1.66 7.22 31.12 0.22 -1.44 16 21 C -0.13 -1.71 7.75 31.12 0.24 -1.47 16 22 C -0.11 -1.57 7.02 31.12 0.22 -1.35 16 23 H 0.07 1.16 8.13 -2.39 -0.02 1.15 16 24 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.14 8.13 -2.38 -0.02 1.12 16 26 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 27 H 0.10 2.12 7.94 -2.39 -0.02 2.10 16 28 H 0.12 4.30 8.14 -2.40 -0.02 4.28 16 29 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 30 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 31 H 0.12 1.38 7.96 -2.38 -0.02 1.36 16 32 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.35 7.41 -2.39 -0.02 1.33 16 36 H 0.12 1.25 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -72.99 328.54 6.92 -66.08 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.08 Total: 11.43 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 4.78 Total: -3.09 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: 0.29 Total: -54.20 kcal Atomic # 8 Polarization: -56.14 SS G_CDS: -0.09 Total: -56.24 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -7.43 SS G_CDS: -1.16 Total: -8.59 kcal Total: -72.99 6.92 -66.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842429034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.949 kcal (2) G-P(sol) polarization free energy of solvation -72.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds