Wall clock time and date at job start Tue Mar 31 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47369 * 2 1 4 4 C 1.50701 * 109.46724 * 240.00365 * 2 1 3 5 5 H 1.08007 * 119.99691 * 240.00059 * 4 2 1 6 6 C 1.37876 * 120.00286 * 59.99888 * 4 2 1 7 7 N 1.31514 * 119.99938 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99943 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47430 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47345 * 120.00099 * 8 6 4 11 11 H 1.48501 * 109.47168 * 240.00137 * 8 6 4 12 12 O 1.45196 * 109.47355 * 120.00288 * 2 1 3 13 13 C 1.34735 * 116.99802 * 269.99936 * 12 2 1 14 14 O 1.21485 * 119.99926 * 359.97438 * 13 12 2 15 15 C 1.47565 * 119.99674 * 179.97438 * 13 12 2 16 16 C 1.39709 * 120.17380 * 359.72679 * 15 13 12 17 17 C 1.37843 * 119.87324 * 179.78604 * 16 15 13 18 18 C 1.38468 * 120.22176 * 0.47059 * 17 16 15 19 19 C 1.50704 * 119.82243 * 179.76613 * 18 17 16 20 20 F 1.39902 * 109.47390 * 120.01627 * 19 18 17 21 21 F 1.39901 * 109.46780 * 240.01282 * 19 18 17 22 22 C 1.38205 * 120.35366 * 359.77671 * 18 17 16 23 23 C 1.38315 * 120.12162 * 359.97438 * 22 18 17 24 24 F 1.35102 * 120.11305 * 179.97438 * 23 22 18 25 25 H 1.08999 * 109.46934 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46624 * 299.99975 * 1 2 3 27 27 H 1.09003 * 109.47126 * 59.99584 * 1 2 3 28 28 H 0.96998 * 119.99531 * 179.97438 * 7 6 4 29 29 H 1.08002 * 120.06697 * 0.02562 * 16 15 13 30 30 H 1.08003 * 119.88557 * 180.22703 * 17 16 15 31 31 H 1.08994 * 109.47213 * 0.02562 * 19 18 17 32 32 H 1.08005 * 119.94154 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 3.1472 -2.2863 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1471 -0.1856 -4.8161 12 8 2.0141 -0.6845 1.1855 13 6 2.2180 0.0668 2.2852 14 8 1.9979 1.2611 2.2542 15 6 2.7087 -0.5612 3.5271 16 6 2.9576 -1.9353 3.5683 17 6 3.4201 -2.5147 4.7304 18 6 3.6295 -1.7411 5.8595 19 6 4.1303 -2.3848 7.1268 20 9 5.3517 -1.8082 7.4916 21 9 3.1972 -2.1874 8.1503 22 6 3.3815 -0.3818 5.8306 23 6 2.9220 0.2154 4.6708 24 9 2.6791 1.5441 4.6429 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1619 -3.4844 29 1 2.7917 -2.5418 2.6902 30 1 3.6161 -3.5764 4.7614 31 1 4.2682 -3.4533 6.9616 32 1 3.5475 0.2154 6.7151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847646745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:11 Heat of formation + Delta-G solvation = -211.077683 kcal Electronic energy + Delta-G solvation = -22138.919406 eV Core-core repulsion = 18035.824890 eV Total energy + Delta-G solvation = -4103.094516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.34039 -48.93127 -47.32112 -39.96268 -38.73454 -35.79234 -33.38632 -32.50357 -31.01628 -29.63483 -27.12933 -25.37827 -23.53170 -23.02187 -21.60542 -19.99587 -18.32345 -17.83470 -17.55487 -17.55177 -16.71459 -16.09639 -15.94130 -15.85132 -15.74500 -14.85862 -14.75973 -14.24559 -14.24488 -13.99451 -13.68673 -13.18138 -13.00358 -12.71461 -12.64881 -12.24319 -11.96763 -11.82924 -11.35713 -11.29546 -11.13620 -10.90282 -10.42448 -10.33620 -9.86403 -9.64500 -9.48508 -9.06470 -8.97235 -8.55189 -6.23767 -4.31287 0.26606 0.86895 2.64122 3.16921 3.20423 3.26301 3.30123 3.39985 3.54076 3.74953 3.88544 4.21471 4.27566 4.58090 4.64672 4.64772 4.93494 5.09070 5.15748 5.28906 5.65382 5.75612 5.86388 5.97410 6.41073 6.56826 6.82334 6.84047 7.03843 7.51841 7.65068 7.84013 8.05825 8.47712 8.78623 9.34300 10.83805 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.003588 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.955635 B = 7802.814783 C = 8319.521676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.049 0.951 4 C -0.522 4.522 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.913 3.087 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.281 1.281 12 O -0.348 6.348 13 C 0.491 3.509 14 O -0.498 6.498 15 C -0.127 4.127 16 C -0.035 4.035 17 C -0.111 4.111 18 C -0.123 4.123 19 C 0.315 3.685 20 F -0.197 7.197 21 F -0.197 7.197 22 C -0.132 4.132 23 C 0.158 3.842 24 F -0.109 7.109 25 H 0.038 0.962 26 H 0.016 0.984 27 H 0.101 0.899 28 H 0.267 0.733 29 H 0.160 0.840 30 H 0.145 0.855 31 H 0.126 0.874 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -8.594 17.078 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.560 4.560 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.525 5.525 8 Si 0.740 3.260 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 O -0.264 6.264 13 C 0.334 3.666 14 O -0.388 6.388 15 C -0.130 4.130 16 C -0.053 4.053 17 C -0.129 4.129 18 C -0.124 4.124 19 C 0.261 3.739 20 F -0.178 7.178 21 F -0.178 7.178 22 C -0.150 4.150 23 C 0.138 3.862 24 F -0.087 7.087 25 H 0.057 0.943 26 H 0.036 0.964 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.178 0.822 30 H 0.163 0.837 31 H 0.143 0.857 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.111 -8.042 16.895 19.397 hybrid contribution 0.142 0.157 -0.765 0.793 sum 5.253 -7.885 16.130 18.707 Atomic orbital electron populations 1.22176 0.97351 1.00235 1.01568 1.20740 0.91521 0.94076 0.77310 0.93355 1.21035 1.32663 1.13585 0.88716 0.91153 1.24894 0.94876 0.95085 0.99111 1.69907 1.35962 1.22475 1.24199 0.86200 0.78637 0.79464 0.81714 1.19451 1.20680 1.20712 1.86524 1.75834 1.43097 1.20950 1.20646 0.75920 0.85414 0.84629 1.90852 1.47667 1.15795 1.84517 1.19762 1.05735 0.94962 0.92501 1.21514 0.92387 0.92686 0.98728 1.20981 0.99866 1.00581 0.91520 1.20358 1.02176 0.94198 0.95669 1.20437 0.73499 0.98181 0.81792 1.93039 1.44859 1.87350 1.92542 1.93037 1.66162 1.96721 1.61884 1.20831 1.01544 0.94884 0.97780 1.17591 0.97189 0.78393 0.93031 1.91631 1.90895 1.29430 1.96735 0.94298 0.96441 0.88088 0.92354 0.82194 0.83709 0.85657 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.33 37.16 0.35 -3.55 16 2 C 0.22 5.71 2.56 -27.88 -0.07 5.64 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.31 8.90 -34.44 -0.31 -14.62 16 5 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 12 O -0.35 -8.02 9.12 -40.59 -0.37 -8.39 16 13 C 0.49 10.48 7.87 34.53 0.27 10.76 16 14 O -0.50 -12.18 14.60 -19.25 -0.28 -12.46 16 15 C -0.13 -2.07 5.88 -104.93 -0.62 -2.68 16 16 C -0.04 -0.43 9.61 -39.18 -0.38 -0.81 16 17 C -0.11 -0.99 9.65 -39.64 -0.38 -1.37 16 18 C -0.12 -1.18 5.38 -104.55 -0.56 -1.74 16 19 C 0.31 2.37 5.44 36.01 0.20 2.56 16 20 F -0.20 -1.85 17.25 2.25 0.04 -1.81 16 21 F -0.20 -1.84 17.25 2.25 0.04 -1.80 16 22 C -0.13 -1.54 9.55 -39.57 -0.38 -1.91 16 23 C 0.16 2.39 7.29 -38.94 -0.28 2.10 16 24 F -0.11 -1.90 15.55 2.25 0.04 -1.87 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 2.71 6.07 -51.93 -0.32 2.39 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.16 1.86 7.61 -52.49 -0.40 1.46 16 30 H 0.15 0.71 7.94 -52.48 -0.42 0.30 16 31 H 0.13 0.44 7.86 -51.93 -0.41 0.03 16 32 H 0.15 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -31.55 299.82 -5.40 -36.95 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -2.72 Total: -2.43 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.26 Total: -4.03 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.65 Total: -20.85 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.11 Total: -5.48 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.55 -5.40 -36.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847646745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.131 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds