Wall clock time and date at job start Tue Mar 31 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47369 * 2 1 4 4 C 1.50701 * 109.46724 * 240.00365 * 2 1 3 5 5 H 1.08007 * 119.99691 * 240.00059 * 4 2 1 6 6 C 1.37876 * 120.00286 * 59.99888 * 4 2 1 7 7 N 1.31514 * 119.99938 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99943 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47430 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47345 * 120.00099 * 8 6 4 11 11 H 1.48501 * 109.47168 * 240.00137 * 8 6 4 12 12 O 1.45196 * 109.47355 * 120.00288 * 2 1 3 13 13 C 1.34735 * 116.99802 * 269.99936 * 12 2 1 14 14 O 1.21485 * 119.99926 * 359.97438 * 13 12 2 15 15 C 1.47565 * 119.99674 * 179.97438 * 13 12 2 16 16 C 1.39709 * 120.17380 * 359.72679 * 15 13 12 17 17 C 1.37843 * 119.87324 * 179.78604 * 16 15 13 18 18 C 1.38468 * 120.22176 * 0.47059 * 17 16 15 19 19 C 1.50704 * 119.82243 * 179.76613 * 18 17 16 20 20 F 1.39902 * 109.47390 * 120.01627 * 19 18 17 21 21 F 1.39901 * 109.46780 * 240.01282 * 19 18 17 22 22 C 1.38205 * 120.35366 * 359.77671 * 18 17 16 23 23 C 1.38315 * 120.12162 * 359.97438 * 22 18 17 24 24 F 1.35102 * 120.11305 * 179.97438 * 23 22 18 25 25 H 1.08999 * 109.46934 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46624 * 299.99975 * 1 2 3 27 27 H 1.09003 * 109.47126 * 59.99584 * 1 2 3 28 28 H 0.96998 * 119.99531 * 179.97438 * 7 6 4 29 29 H 1.08002 * 120.06697 * 0.02562 * 16 15 13 30 30 H 1.08003 * 119.88557 * 180.22703 * 17 16 15 31 31 H 1.08994 * 109.47213 * 0.02562 * 19 18 17 32 32 H 1.08005 * 119.94154 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 3.1472 -2.2863 -3.6039 10 1 1.1676 -1.5865 -4.8166 11 1 3.1471 -0.1856 -4.8161 12 8 2.0141 -0.6845 1.1855 13 6 2.2180 0.0668 2.2852 14 8 1.9979 1.2611 2.2542 15 6 2.7087 -0.5612 3.5271 16 6 2.9576 -1.9353 3.5683 17 6 3.4201 -2.5147 4.7304 18 6 3.6295 -1.7411 5.8595 19 6 4.1303 -2.3848 7.1268 20 9 5.3517 -1.8082 7.4916 21 9 3.1972 -2.1874 8.1503 22 6 3.3815 -0.3818 5.8306 23 6 2.9220 0.2154 4.6708 24 9 2.6791 1.5441 4.6429 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1619 -3.4844 29 1 2.7917 -2.5418 2.6902 30 1 3.6161 -3.5764 4.7614 31 1 4.2682 -3.4533 6.9616 32 1 3.5475 0.2154 6.7151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847646745.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:11 Heat of formation + Delta-G solvation = -229.033748 kcal Electronic energy + Delta-G solvation = -22139.698039 eV Core-core repulsion = 18035.824890 eV Total energy + Delta-G solvation = -4103.873149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.16351 -49.96805 -47.96460 -41.50493 -39.94613 -37.65671 -35.38737 -33.60321 -31.97421 -31.62579 -28.08796 -27.47783 -24.84116 -23.95449 -23.09500 -21.68131 -19.49422 -18.92052 -18.80484 -18.30028 -18.18533 -17.64773 -17.24593 -17.02668 -16.90641 -16.54136 -16.49797 -15.50296 -14.99021 -14.90159 -14.74650 -14.34406 -14.33339 -14.13341 -13.97368 -13.53171 -13.46449 -13.22000 -13.04403 -12.83484 -12.70578 -12.42539 -12.16289 -12.10587 -11.67059 -11.55356 -11.03059 -10.64021 -10.51802 -10.04821 -8.30389 -6.47954 -0.81349 -0.07412 1.30594 1.42605 1.44024 1.57010 1.74754 2.31043 2.38567 2.52851 2.90921 3.01036 3.23317 3.37301 3.65651 3.82539 3.89331 4.04761 4.07524 4.36872 4.45845 4.62515 4.74169 4.78631 4.81130 4.92848 5.00961 5.08366 5.44717 5.47793 5.56198 5.83512 5.98639 6.55069 6.78958 7.23420 8.78008 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.030102 B = 0.003588 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.955635 B = 7802.814783 C = 8319.521676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.987 3.013 9 H -0.258 1.258 10 H -0.272 1.272 11 H -0.279 1.279 12 O -0.346 6.346 13 C 0.486 3.514 14 O -0.543 6.543 15 C -0.158 4.158 16 C -0.033 4.033 17 C -0.080 4.080 18 C -0.111 4.111 19 C 0.315 3.685 20 F -0.208 7.208 21 F -0.208 7.208 22 C -0.129 4.129 23 C 0.132 3.868 24 F -0.134 7.134 25 H 0.052 0.948 26 H 0.019 0.981 27 H 0.082 0.918 28 H 0.271 0.729 29 H 0.167 0.833 30 H 0.203 0.797 31 H 0.184 0.816 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.552 -12.239 18.114 22.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.023 0.977 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.810 3.190 9 H -0.182 1.182 10 H -0.197 1.197 11 H -0.204 1.204 12 O -0.262 6.262 13 C 0.332 3.668 14 O -0.436 6.436 15 C -0.160 4.160 16 C -0.051 4.051 17 C -0.098 4.098 18 C -0.112 4.112 19 C 0.262 3.738 20 F -0.189 7.189 21 F -0.189 7.189 22 C -0.148 4.148 23 C 0.112 3.888 24 F -0.113 7.113 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.185 0.815 30 H 0.220 0.780 31 H 0.200 0.800 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.381 -11.700 17.962 22.366 hybrid contribution -0.215 1.272 -0.943 1.598 sum 6.165 -10.428 17.019 20.890 Atomic orbital electron populations 1.22000 0.96596 1.00739 1.00724 1.20456 0.92161 0.92150 0.78868 0.97739 1.21317 1.33488 1.14043 0.89462 0.90732 1.25888 0.94655 0.95643 1.02318 1.70038 1.36669 1.23753 1.25253 0.85071 0.78323 0.78429 0.77193 1.18210 1.19686 1.20417 1.86498 1.76128 1.42726 1.20832 1.21613 0.74680 0.85132 0.85388 1.90816 1.49816 1.17745 1.85199 1.19597 1.09223 0.96931 0.90277 1.21712 0.92071 0.90691 1.00599 1.21507 0.96202 1.02968 0.89101 1.20838 0.99909 0.93179 0.97281 1.20961 0.72441 1.00439 0.79934 1.93027 1.45532 1.87861 1.92503 1.93026 1.66673 1.96918 1.62271 1.21045 1.00737 0.96336 0.96690 1.17924 0.99167 0.77561 0.94137 1.91558 1.91459 1.31312 1.96931 0.92924 0.96207 0.89935 0.91975 0.81545 0.77986 0.79966 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.44 9.33 71.98 0.67 -6.76 16 2 C 0.22 12.01 2.56 29.85 0.08 12.08 16 3 H 0.00 0.30 7.16 -2.39 -0.02 0.28 16 4 C -0.55 -30.48 8.90 25.60 0.23 -30.25 16 5 H 0.07 3.99 7.81 -2.91 -0.02 3.97 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -52.83 11.32 21.45 0.24 -52.59 16 8 Si 0.99 42.05 29.54 68.60 2.03 44.07 16 9 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 12 O -0.35 -16.56 9.12 -56.45 -0.51 -17.08 16 13 C 0.49 21.91 7.87 70.28 0.55 22.46 16 14 O -0.54 -28.66 14.60 19.89 0.29 -28.37 16 15 C -0.16 -5.22 5.88 -20.06 -0.12 -5.33 16 16 C -0.03 -0.73 9.61 22.53 0.22 -0.51 16 17 C -0.08 -1.02 9.65 22.23 0.21 -0.80 16 18 C -0.11 -1.67 5.38 -19.82 -0.11 -1.78 16 19 C 0.32 3.14 5.44 71.24 0.39 3.53 16 20 F -0.21 -3.11 17.25 44.97 0.78 -2.34 16 21 F -0.21 -3.07 17.25 44.97 0.78 -2.30 16 22 C -0.13 -2.83 9.55 22.28 0.21 -2.62 16 23 C 0.13 4.08 7.29 22.69 0.17 4.24 16 24 F -0.13 -5.03 15.55 44.97 0.70 -4.33 16 25 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 4.60 6.07 -2.39 -0.01 4.59 16 28 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.17 3.49 7.61 -2.91 -0.02 3.47 16 30 H 0.20 0.35 7.94 -2.91 -0.02 0.32 16 31 H 0.18 -0.10 7.86 -2.39 -0.02 -0.12 16 32 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -74.29 299.82 8.42 -65.88 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: 1.17 Total: 1.56 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 2.95 Total: -4.51 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.24 Total: -52.59 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -0.22 Total: -45.45 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 2.25 Total: -8.97 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -74.29 8.42 -65.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847646745.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.155 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds