Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00090 * 2 1 4 4 H 1.48504 * 109.47356 * 270.00570 * 3 2 1 5 5 H 1.48508 * 109.46971 * 30.00176 * 3 2 1 6 6 H 1.48493 * 109.47234 * 150.00199 * 3 2 1 7 7 C 1.37883 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46531 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46668 * 180.02562 * 10 9 7 12 12 C 1.34727 * 116.99752 * 179.97438 * 11 10 9 13 13 O 1.21488 * 120.00216 * 0.02562 * 12 11 10 14 14 C 1.47565 * 119.99616 * 179.97438 * 12 11 10 15 15 C 1.39718 * 120.17674 * 0.25572 * 14 12 11 16 16 C 1.37832 * 119.87389 * 180.27354 * 15 14 12 17 17 C 1.38479 * 120.22493 * 359.46856 * 16 15 14 18 18 C 1.50699 * 119.82291 * 180.23480 * 17 16 15 19 19 F 1.39900 * 109.47091 * 300.00054 * 18 17 16 20 20 F 1.39901 * 109.47023 * 60.00431 * 18 17 16 21 21 C 1.38204 * 120.34928 * 0.25619 * 17 16 15 22 22 C 1.38316 * 120.12339 * 0.02562 * 21 17 16 23 23 F 1.35104 * 120.10940 * 180.02562 * 22 21 17 24 24 H 0.96996 * 120.00228 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47016 * 60.00376 * 9 7 2 26 26 H 1.09004 * 109.46947 * 300.00148 * 9 7 2 27 27 H 1.08997 * 109.47457 * 60.00286 * 10 9 7 28 28 H 1.08996 * 109.47482 * 299.99836 * 10 9 7 29 29 H 1.07997 * 120.06021 * 0.02562 * 15 14 12 30 30 H 1.08002 * 119.89021 * 179.75219 * 16 15 14 31 31 H 1.09003 * 109.46997 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.93894 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9196 -0.0011 12 6 2.2531 -6.0495 -0.0018 13 8 3.4663 -5.9859 -0.0013 14 6 1.5831 -7.3643 -0.0018 15 6 0.1881 -7.4417 -0.0067 16 6 -0.4312 -8.6730 -0.0010 17 6 0.3245 -9.8334 -0.0016 18 6 -0.3621 -11.1749 -0.0008 19 9 -1.1605 -11.2894 1.1423 20 9 -1.1627 -11.2897 -1.1423 21 6 1.7049 -9.7677 -0.0026 22 6 2.3414 -8.5397 -0.0024 23 9 3.6910 -8.4758 -0.0039 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6044 -0.8905 29 1 -0.4038 -6.5384 -0.0108 30 1 -1.5096 -8.7331 -0.0007 31 1 0.3872 -11.9665 -0.0019 32 1 2.2879 -10.6769 -0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847671255.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = -215.988624 kcal Electronic energy + Delta-G solvation = -21538.598107 eV Core-core repulsion = 17435.290637 eV Total energy + Delta-G solvation = -4103.307470 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.43241 -49.16519 -47.41264 -40.30081 -39.00698 -36.19033 -33.44699 -32.81132 -31.09446 -30.31035 -27.42327 -25.12039 -23.48582 -23.13063 -21.29535 -20.71117 -18.41678 -18.15712 -17.72078 -17.64656 -16.65470 -16.36286 -16.29273 -16.22547 -15.80259 -15.60253 -14.73481 -14.46497 -14.33832 -14.05063 -13.77363 -13.55126 -13.43865 -12.98492 -12.65126 -12.51775 -12.40591 -12.15358 -11.45457 -11.31485 -11.11346 -10.81353 -10.75510 -10.38352 -9.78193 -9.69966 -9.66056 -9.35144 -9.23282 -8.48020 -6.14209 -4.18724 0.05360 0.69345 2.35150 2.82951 3.08103 3.24083 3.26622 3.32885 3.37063 3.62264 3.82380 4.01154 4.35013 4.38493 4.50806 4.54427 4.71504 4.78515 5.13992 5.22646 5.45904 5.52468 5.69439 5.77246 5.99610 6.02055 6.23453 6.55950 6.79532 7.49118 7.56126 7.80672 8.01867 8.18992 8.86595 9.45970 10.97269 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.029317 B = 0.002981 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.833427 B = 9390.900667 C =10160.624835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.349 6.349 12 C 0.497 3.503 13 O -0.497 6.497 14 C -0.133 4.133 15 C -0.032 4.032 16 C -0.104 4.104 17 C -0.118 4.118 18 C 0.315 3.685 19 F -0.194 7.194 20 F -0.194 7.194 21 C -0.136 4.136 22 C 0.159 3.841 23 F -0.109 7.109 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.161 0.839 30 H 0.145 0.855 31 H 0.124 0.876 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -23.681 -0.010 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.265 6.265 12 C 0.340 3.660 13 O -0.386 6.386 14 C -0.135 4.135 15 C -0.050 4.050 16 C -0.123 4.123 17 C -0.119 4.119 18 C 0.261 3.739 19 F -0.176 7.176 20 F -0.176 7.176 21 C -0.155 4.155 22 C 0.139 3.861 23 F -0.087 7.087 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.179 0.821 30 H 0.163 0.837 31 H 0.141 0.859 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.142 -23.482 -0.006 23.509 hybrid contribution 0.693 1.016 -0.010 1.230 sum -0.448 -22.465 -0.016 22.470 Atomic orbital electron populations 1.69966 1.06093 1.27065 1.49674 1.24980 0.94929 0.99413 0.94791 0.86459 0.79771 0.82744 0.78272 1.20454 1.21024 1.19699 1.20966 0.93212 0.90035 1.52357 0.92208 1.19186 0.94168 0.88902 0.98960 1.23751 0.96513 0.78108 1.01266 1.86559 1.41868 1.15502 1.82590 1.20716 0.85713 0.85348 0.74231 1.90878 1.14589 1.88187 1.44960 1.19599 0.94636 0.90676 1.08599 1.21558 0.92264 0.99316 0.91850 1.21072 1.01216 0.90960 0.99008 1.20389 0.93751 0.95351 1.02420 1.20371 0.85772 0.96092 0.71670 1.93048 1.76556 1.97016 1.50932 1.93048 1.76441 1.97013 1.51057 1.20777 0.93771 0.97115 1.03818 1.17515 0.77706 0.92562 0.98279 1.91635 1.27391 1.97008 1.92660 0.92662 0.95251 0.95250 0.92009 0.92023 0.82114 0.83731 0.85885 0.83054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.66 5.41 37.16 0.20 1.86 16 11 O -0.35 -6.77 9.47 -40.57 -0.38 -7.16 16 12 C 0.50 8.88 7.89 34.53 0.27 9.16 16 13 O -0.50 -10.15 15.13 -19.26 -0.29 -10.44 16 14 C -0.13 -1.83 5.88 -104.93 -0.62 -2.45 16 15 C -0.03 -0.35 9.62 -39.18 -0.38 -0.73 16 16 C -0.10 -0.94 9.57 -39.64 -0.38 -1.32 16 17 C -0.12 -0.96 5.38 -104.55 -0.56 -1.52 16 18 C 0.31 2.02 5.44 36.01 0.20 2.22 16 19 F -0.19 -1.61 17.25 2.25 0.04 -1.57 16 20 F -0.19 -1.61 17.25 2.25 0.04 -1.57 16 21 C -0.14 -1.14 9.63 -39.57 -0.38 -1.52 16 22 C 0.16 1.94 7.29 -38.94 -0.28 1.66 16 23 F -0.11 -1.55 15.55 2.25 0.04 -1.52 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.16 1.72 7.61 -52.49 -0.40 1.32 16 30 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.12 0.33 7.86 -51.93 -0.41 -0.07 16 32 H 0.15 0.75 7.93 -52.48 -0.42 0.34 16 LS Contribution 304.91 15.07 4.60 4.60 Total: -1.00 -31.94 304.91 -5.62 -37.56 By element: Atomic # 1 Polarization: -2.44 SS G_CDS: -2.88 Total: -5.32 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.49 Total: -5.51 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.68 Total: -17.60 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.11 Total: -4.66 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.94 -5.62 -37.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847671255.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.430 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds