Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00090 * 2 1 4 4 H 1.48504 * 109.47356 * 270.00570 * 3 2 1 5 5 H 1.48508 * 109.46971 * 30.00176 * 3 2 1 6 6 H 1.48493 * 109.47234 * 150.00199 * 3 2 1 7 7 C 1.37883 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99729 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46531 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.46668 * 180.02562 * 10 9 7 12 12 C 1.34727 * 116.99752 * 179.97438 * 11 10 9 13 13 O 1.21488 * 120.00216 * 0.02562 * 12 11 10 14 14 C 1.47565 * 119.99616 * 179.97438 * 12 11 10 15 15 C 1.39718 * 120.17674 * 0.25572 * 14 12 11 16 16 C 1.37832 * 119.87389 * 180.27354 * 15 14 12 17 17 C 1.38479 * 120.22493 * 359.46856 * 16 15 14 18 18 C 1.50699 * 119.82291 * 180.23480 * 17 16 15 19 19 F 1.39900 * 109.47091 * 300.00054 * 18 17 16 20 20 F 1.39901 * 109.47023 * 60.00431 * 18 17 16 21 21 C 1.38204 * 120.34928 * 0.25619 * 17 16 15 22 22 C 1.38316 * 120.12339 * 0.02562 * 21 17 16 23 23 F 1.35104 * 120.10940 * 180.02562 * 22 21 17 24 24 H 0.96996 * 120.00228 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47016 * 60.00376 * 9 7 2 26 26 H 1.09004 * 109.46947 * 300.00148 * 9 7 2 27 27 H 1.08997 * 109.47457 * 60.00286 * 10 9 7 28 28 H 1.08996 * 109.47482 * 299.99836 * 10 9 7 29 29 H 1.07997 * 120.06021 * 0.02562 * 15 14 12 30 30 H 1.08002 * 119.89021 * 179.75219 * 16 15 14 31 31 H 1.09003 * 109.46997 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.93894 * 180.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9196 -0.0011 12 6 2.2531 -6.0495 -0.0018 13 8 3.4663 -5.9859 -0.0013 14 6 1.5831 -7.3643 -0.0018 15 6 0.1881 -7.4417 -0.0067 16 6 -0.4312 -8.6730 -0.0010 17 6 0.3245 -9.8334 -0.0016 18 6 -0.3621 -11.1749 -0.0008 19 9 -1.1605 -11.2894 1.1423 20 9 -1.1627 -11.2897 -1.1423 21 6 1.7049 -9.7677 -0.0026 22 6 2.3414 -8.5397 -0.0024 23 9 3.6910 -8.4758 -0.0039 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8894 28 1 2.8720 -3.6044 -0.8905 29 1 -0.4038 -6.5384 -0.0108 30 1 -1.5096 -8.7331 -0.0007 31 1 0.3872 -11.9665 -0.0019 32 1 2.2879 -10.6769 -0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847671255.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = -233.526167 kcal Electronic energy + Delta-G solvation = -21539.358592 eV Core-core repulsion = 17435.290637 eV Total energy + Delta-G solvation = -4104.067955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.15834 -49.98199 -47.97467 -41.65247 -40.00173 -37.78227 -35.48875 -33.76698 -32.26399 -31.90647 -28.35404 -26.94234 -24.34287 -24.22042 -22.94670 -22.09900 -19.48742 -19.05420 -18.60379 -18.35016 -18.19810 -17.74752 -17.73163 -17.05950 -16.90678 -16.76116 -16.55127 -15.57636 -15.15535 -14.93886 -14.91088 -14.43305 -14.40344 -14.34022 -14.27038 -13.57729 -13.36316 -13.18263 -13.08843 -12.88779 -12.64271 -12.60409 -12.15115 -11.91321 -11.58504 -11.56285 -11.41764 -10.63331 -10.56414 -10.07582 -8.28860 -6.41971 -0.88019 -0.09634 1.17285 1.38589 1.42107 1.47299 1.55436 2.24439 2.37917 2.42476 2.96558 3.05783 3.20309 3.36073 3.44674 3.77276 3.87601 3.93638 4.02843 4.16757 4.17685 4.37572 4.56344 4.65672 4.77367 4.85558 4.96466 5.15474 5.41184 5.43559 5.43587 5.70194 6.03909 6.50091 6.71150 7.27779 8.83664 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.029317 B = 0.002981 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.833427 B = 9390.900667 C =10160.624835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.091 3.909 11 O -0.353 6.353 12 C 0.495 3.505 13 O -0.529 6.529 14 C -0.160 4.160 15 C -0.035 4.035 16 C -0.101 4.101 17 C -0.108 4.108 18 C 0.315 3.685 19 F -0.205 7.205 20 F -0.205 7.205 21 C -0.112 4.112 22 C 0.142 3.858 23 F -0.126 7.126 24 H 0.268 0.732 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.157 0.843 30 H 0.164 0.836 31 H 0.174 0.826 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 -25.596 -0.019 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.082 0.918 9 C -0.005 4.005 10 C 0.018 3.982 11 O -0.269 6.269 12 C 0.341 3.659 13 O -0.420 6.420 14 C -0.162 4.162 15 C -0.053 4.053 16 C -0.119 4.119 17 C -0.109 4.109 18 C 0.262 3.738 19 F -0.186 7.186 20 F -0.186 7.186 21 C -0.130 4.130 22 C 0.122 3.878 23 F -0.104 7.104 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.175 0.825 30 H 0.181 0.819 31 H 0.191 0.809 32 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.031 -25.420 -0.016 25.441 hybrid contribution 0.561 1.472 -0.008 1.575 sum -0.470 -23.948 -0.023 23.953 Atomic orbital electron populations 1.70082 1.07738 1.28328 1.50253 1.25940 0.95853 1.03329 0.94024 0.85329 0.78529 0.77808 0.78679 1.19541 1.20311 1.18838 1.21360 0.93695 0.91225 1.52686 0.91782 1.18984 0.94271 0.90273 0.96966 1.23269 0.95260 0.78498 1.01207 1.86540 1.41825 1.15440 1.83098 1.21466 0.85578 0.85986 0.72852 1.90847 1.15893 1.88535 1.46742 1.19484 0.95707 0.88789 1.12190 1.21543 0.91136 1.00404 0.92182 1.21331 1.02324 0.90449 0.97783 1.20742 0.93791 0.96213 1.00135 1.20804 0.86131 0.96073 0.70766 1.93035 1.77010 1.96977 1.51563 1.93036 1.76897 1.96975 1.51685 1.21133 0.93978 0.96934 1.00962 1.17830 0.77057 0.93392 0.99493 1.91591 1.28679 1.97142 1.92977 0.92274 0.97201 0.97204 0.92043 0.92034 0.82498 0.81879 0.80923 0.78757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.72 5.35 29.85 0.16 1.88 16 10 C 0.09 4.12 5.41 71.98 0.39 4.51 16 11 O -0.35 -14.31 9.47 -56.37 -0.53 -14.84 16 12 C 0.50 18.39 7.89 70.28 0.55 18.95 16 13 O -0.53 -22.41 15.13 19.87 0.30 -22.11 16 14 C -0.16 -4.42 5.88 -20.06 -0.12 -4.54 16 15 C -0.03 -0.76 9.62 22.53 0.22 -0.54 16 16 C -0.10 -1.61 9.57 22.23 0.21 -1.40 16 17 C -0.11 -1.37 5.38 -19.82 -0.11 -1.48 16 18 C 0.32 2.68 5.44 71.24 0.39 3.07 16 19 F -0.20 -2.67 17.25 44.97 0.78 -1.89 16 20 F -0.20 -2.67 17.25 44.97 0.78 -1.89 16 21 C -0.11 -1.48 9.63 22.28 0.21 -1.27 16 22 C 0.14 3.31 7.29 22.69 0.17 3.48 16 23 F -0.13 -3.55 15.55 44.97 0.70 -2.85 16 24 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.16 3.46 7.61 -2.91 -0.02 3.44 16 30 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 31 H 0.17 -0.13 7.86 -2.39 -0.02 -0.14 16 32 H 0.20 0.87 7.93 -2.91 -0.02 0.84 16 Total: -1.00 -71.23 304.91 8.26 -62.97 By element: Atomic # 1 Polarization: -3.95 SS G_CDS: 1.16 Total: -2.78 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 2.77 Total: -7.48 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.28 Total: -54.67 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.23 Total: -36.95 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 2.25 Total: -6.64 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.23 8.26 -62.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847671255.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.558 kcal (2) G-P(sol) polarization free energy of solvation -71.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds