Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86798 * 120.00409 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00600 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00350 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00061 * 3 2 1 7 7 C 1.38805 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99906 * 179.97438 * 7 2 1 9 9 O 1.34862 * 119.99570 * 359.71696 * 7 2 1 10 10 C 1.34763 * 116.99548 * 180.02562 * 9 7 2 11 11 O 1.21527 * 120.00271 * 0.02562 * 10 9 7 12 12 C 1.47483 * 119.99611 * 180.02562 * 10 9 7 13 13 C 1.40156 * 119.92859 * 0.02562 * 12 10 9 14 14 C 1.36485 * 120.43151 * 179.97438 * 13 12 10 15 15 C 1.38983 * 120.17540 * 0.02562 * 14 13 12 16 16 C 1.40678 * 120.17735 * 359.97438 * 15 14 13 17 17 C 1.39308 * 119.92135 * 179.72620 * 12 10 9 18 18 N 1.35996 * 107.04610 * 180.02562 * 16 15 14 19 19 C 1.30716 * 109.53259 * 359.97438 * 18 16 15 20 20 O 1.35273 * 125.01376 * 180.02562 * 19 18 16 21 21 N 1.36448 * 109.97215 * 0.02562 * 19 18 16 22 22 C 1.46494 * 126.31792 * 180.02562 * 21 19 18 23 23 C 1.52999 * 117.50072 * 8.71449 * 22 21 19 24 24 C 1.53000 * 117.49820 * 300.05736 * 22 21 19 25 25 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.78256 * 0.02562 * 13 12 10 27 27 H 1.07997 * 119.91767 * 180.02562 * 14 13 12 28 28 H 1.07998 * 120.25037 * 0.02584 * 17 12 10 29 29 H 0.96705 * 113.99752 * 89.97817 * 20 19 18 30 30 H 1.08997 * 115.54873 * 154.39303 * 22 21 19 31 31 H 1.08997 * 117.49654 * 0.02562 * 23 22 21 32 32 H 1.09002 * 117.49495 * 145.01961 * 23 22 21 33 33 H 1.08999 * 117.50051 * 214.98497 * 24 22 21 34 34 H 1.09004 * 117.49734 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5459 1.4400 0.7000 7 6 2.0082 -1.2021 -0.0005 8 1 3.0881 -1.2021 -0.0010 9 8 1.3338 -2.3700 0.0047 10 6 2.0678 -3.5002 0.0044 11 8 3.2814 -3.4367 0.0000 12 6 1.3981 -4.8142 0.0094 13 6 -0.0016 -4.8857 0.0139 14 6 -0.6320 -6.0963 0.0180 15 6 0.1111 -7.2708 0.0183 16 6 1.5169 -7.2183 0.0138 17 6 2.1584 -5.9816 0.0033 18 7 1.9638 -8.5027 0.0146 19 6 0.9439 -9.3203 0.0198 20 8 1.0313 -10.6702 0.0226 21 7 -0.2219 -8.6113 0.0220 22 6 -1.5765 -9.1689 0.0283 23 6 -1.7185 -10.6777 0.2384 24 6 -1.9752 -10.0694 -1.1426 25 1 -0.4850 0.8400 0.0004 26 1 -0.5852 -3.9769 0.0133 27 1 -1.7110 -6.1417 0.0211 28 1 3.2370 -5.9284 -0.0047 29 1 1.0600 -11.0607 0.9068 30 1 -2.3473 -8.5266 0.4543 31 1 -0.8040 -11.2554 0.3724 32 1 -2.5829 -11.0281 0.8025 33 1 -3.0082 -10.0200 -1.4866 34 1 -1.2296 -10.2467 -1.9178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850250106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = -0.829852 kcal Electronic energy + Delta-G solvation = -21646.163314 eV Core-core repulsion = 18126.335319 eV Total energy + Delta-G solvation = -3519.827994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.29525 -39.21511 -38.30854 -37.36805 -36.22596 -35.02648 -32.76086 -32.17919 -29.88586 -29.06434 -25.59472 -23.88659 -23.46381 -23.05277 -22.47200 -20.49769 -20.29987 -18.33264 -17.90752 -17.63759 -17.39338 -16.40723 -15.78090 -15.25492 -14.78454 -14.55350 -14.49227 -14.27343 -14.12633 -13.94122 -13.72101 -12.86514 -12.54821 -12.18321 -12.11655 -11.76428 -11.57914 -11.35114 -11.14604 -11.10192 -11.02551 -10.46127 -10.42102 -10.10362 -9.97018 -9.82346 -9.09288 -8.60614 -8.19903 -8.00479 -6.46087 -4.08342 0.96284 1.24839 2.04257 2.52368 3.11627 3.16266 3.19180 3.25020 3.46459 3.50326 3.89984 4.07565 4.27932 4.32212 4.35107 4.46004 4.64460 4.93241 5.11147 5.14991 5.19016 5.35550 5.38370 5.49461 5.58476 5.67836 5.69764 6.16568 6.27626 6.38242 6.54229 6.69555 6.86051 7.04673 7.33927 7.38234 7.72648 7.92180 8.70108 9.03180 9.82646 10.71722 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.037698 B = 0.003391 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.569062 B = 8256.178079 C = 8916.623322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.374 4.374 8 H 0.098 0.902 9 O -0.205 6.205 10 C 0.437 3.563 11 O -0.551 6.551 12 C -0.091 4.091 13 C -0.047 4.047 14 C -0.123 4.123 15 C 0.075 3.925 16 C 0.043 3.957 17 C -0.010 4.010 18 N -0.475 5.475 19 C 0.437 3.563 20 O -0.441 6.441 21 N -0.465 5.465 22 C 0.060 3.940 23 C -0.182 4.182 24 C -0.176 4.176 25 H 0.271 0.729 26 H 0.153 0.847 27 H 0.127 0.873 28 H 0.145 0.855 29 H 0.404 0.596 30 H 0.143 0.857 31 H 0.116 0.884 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.791 -19.460 1.517 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.450 4.450 8 H 0.116 0.884 9 O -0.112 6.112 10 C 0.285 3.715 11 O -0.450 6.450 12 C -0.094 4.094 13 C -0.066 4.066 14 C -0.144 4.144 15 C -0.033 4.033 16 C -0.074 4.074 17 C -0.030 4.030 18 N -0.205 5.205 19 C 0.135 3.865 20 O -0.243 6.243 21 N -0.167 5.167 22 C -0.044 4.044 23 C -0.219 4.219 24 C -0.214 4.214 25 H 0.080 0.920 26 H 0.170 0.830 27 H 0.145 0.855 28 H 0.162 0.838 29 H 0.263 0.737 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.903 -19.594 0.922 20.795 hybrid contribution -0.544 0.647 0.455 0.960 sum -7.447 -18.946 1.377 20.404 Atomic orbital electron populations 1.69972 1.06040 1.27873 1.45794 1.25364 0.95853 0.98909 0.96178 0.85646 0.79105 0.79528 0.78805 1.19815 1.20305 1.18981 1.21319 0.92604 0.79713 1.51338 0.88412 1.83887 1.39085 1.13180 1.75010 1.20537 0.85806 0.85262 0.79906 1.90643 1.15065 1.87814 1.51434 1.19097 0.93310 0.91340 1.05679 1.21134 0.93695 0.97730 0.94083 1.19579 0.99255 0.88757 1.06802 1.18762 0.95607 0.83464 1.05476 1.18476 0.89701 0.91225 1.07980 1.20304 1.00765 0.87154 0.94739 1.70665 1.27008 0.99870 1.22949 1.20255 0.80604 0.84282 1.01385 1.84829 1.93853 1.11265 1.34395 1.44963 1.05546 1.04992 1.61178 1.21918 0.83337 0.93331 1.05817 1.23652 1.05091 0.93161 1.00043 1.23456 1.03579 1.02111 0.92263 0.91952 0.82971 0.85541 0.83750 0.73741 0.83984 0.86649 0.87222 0.87217 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.52 13.67 55.49 0.76 -23.77 16 2 C 0.04 1.15 5.50 -17.52 -0.10 1.05 16 3 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.37 -10.97 9.65 30.94 0.30 -10.67 16 8 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 9 O -0.20 -5.82 8.96 -21.75 -0.19 -6.01 16 10 C 0.44 11.22 7.83 34.50 0.27 11.49 16 11 O -0.55 -15.33 15.57 -19.29 -0.30 -15.63 16 12 C -0.09 -1.88 5.87 -105.01 -0.62 -2.50 16 13 C -0.05 -0.83 9.54 -39.49 -0.38 -1.21 16 14 C -0.12 -1.81 9.96 -39.94 -0.40 -2.21 16 15 C 0.07 1.15 6.87 -83.83 -0.58 0.58 16 16 C 0.04 0.76 7.21 -84.70 -0.61 0.15 16 17 C -0.01 -0.19 9.64 -38.78 -0.37 -0.56 16 18 N -0.47 -7.97 11.32 -12.25 -0.14 -8.11 16 19 C 0.44 5.80 8.83 -88.90 -0.79 5.02 16 20 O -0.44 -4.09 10.95 -17.51 -0.19 -4.28 16 21 N -0.47 -5.82 3.15 -108.82 -0.34 -6.16 16 22 C 0.06 0.51 6.87 -67.93 -0.47 0.04 16 23 C -0.18 -1.07 9.87 -26.70 -0.26 -1.34 16 24 C -0.18 -1.27 10.40 -26.70 -0.28 -1.54 16 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.15 2.78 7.58 -52.48 -0.40 2.38 16 27 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.14 2.82 7.63 -52.49 -0.40 2.42 16 29 H 0.40 1.63 8.56 45.56 0.39 2.02 16 30 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.12 0.64 5.01 -51.93 -0.26 0.38 16 32 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -35.41 307.11 -7.35 -42.76 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -2.28 Total: 2.26 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -4.27 Total: -1.69 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.28 Total: -38.04 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.69 Total: -25.92 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -35.41 -7.35 -42.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850250106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.934 kcal (2) G-P(sol) polarization free energy of solvation -35.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds