Wall clock time and date at job start Tue Mar 31 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86798 * 120.00409 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00600 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00350 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00061 * 3 2 1 7 7 C 1.38805 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99906 * 179.97438 * 7 2 1 9 9 O 1.34862 * 119.99570 * 359.71696 * 7 2 1 10 10 C 1.34763 * 116.99548 * 180.02562 * 9 7 2 11 11 O 1.21527 * 120.00271 * 0.02562 * 10 9 7 12 12 C 1.47483 * 119.99611 * 180.02562 * 10 9 7 13 13 C 1.40156 * 119.92859 * 0.02562 * 12 10 9 14 14 C 1.36485 * 120.43151 * 179.97438 * 13 12 10 15 15 C 1.38983 * 120.17540 * 0.02562 * 14 13 12 16 16 C 1.40678 * 120.17735 * 359.97438 * 15 14 13 17 17 C 1.39308 * 119.92135 * 179.72620 * 12 10 9 18 18 N 1.35996 * 107.04610 * 180.02562 * 16 15 14 19 19 C 1.30716 * 109.53259 * 359.97438 * 18 16 15 20 20 O 1.35273 * 125.01376 * 180.02562 * 19 18 16 21 21 N 1.36448 * 109.97215 * 0.02562 * 19 18 16 22 22 C 1.46494 * 126.31792 * 180.02562 * 21 19 18 23 23 C 1.52999 * 117.50072 * 8.71449 * 22 21 19 24 24 C 1.53000 * 117.49820 * 300.05736 * 22 21 19 25 25 H 0.97000 * 120.00154 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.78256 * 0.02562 * 13 12 10 27 27 H 1.07997 * 119.91767 * 180.02562 * 14 13 12 28 28 H 1.07998 * 120.25037 * 0.02584 * 17 12 10 29 29 H 0.96705 * 113.99752 * 89.97817 * 20 19 18 30 30 H 1.08997 * 115.54873 * 154.39303 * 22 21 19 31 31 H 1.08997 * 117.49654 * 0.02562 * 23 22 21 32 32 H 1.09002 * 117.49495 * 145.01961 * 23 22 21 33 33 H 1.08999 * 117.50051 * 214.98497 * 24 22 21 34 34 H 1.09004 * 117.49734 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5459 1.4400 0.7000 7 6 2.0082 -1.2021 -0.0005 8 1 3.0881 -1.2021 -0.0010 9 8 1.3338 -2.3700 0.0047 10 6 2.0678 -3.5002 0.0044 11 8 3.2814 -3.4367 0.0000 12 6 1.3981 -4.8142 0.0094 13 6 -0.0016 -4.8857 0.0139 14 6 -0.6320 -6.0963 0.0180 15 6 0.1111 -7.2708 0.0183 16 6 1.5169 -7.2183 0.0138 17 6 2.1584 -5.9816 0.0033 18 7 1.9638 -8.5027 0.0146 19 6 0.9439 -9.3203 0.0198 20 8 1.0313 -10.6702 0.0226 21 7 -0.2219 -8.6113 0.0220 22 6 -1.5765 -9.1689 0.0283 23 6 -1.7185 -10.6777 0.2384 24 6 -1.9752 -10.0694 -1.1426 25 1 -0.4850 0.8400 0.0004 26 1 -0.5852 -3.9769 0.0133 27 1 -1.7110 -6.1417 0.0211 28 1 3.2370 -5.9284 -0.0047 29 1 1.0600 -11.0607 0.9068 30 1 -2.3473 -8.5266 0.4543 31 1 -0.8040 -11.2554 0.3724 32 1 -2.5829 -11.0281 0.8025 33 1 -3.0082 -10.0200 -1.4866 34 1 -1.2296 -10.2467 -1.9178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850250106.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:09 Heat of formation + Delta-G solvation = -26.846733 kcal Electronic energy + Delta-G solvation = -21647.291490 eV Core-core repulsion = 18126.335319 eV Total energy + Delta-G solvation = -3520.956171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.44471 -41.10897 -39.47048 -38.07752 -37.63021 -36.98229 -34.31249 -33.87432 -31.24001 -30.44728 -27.61087 -25.19220 -24.56598 -23.90662 -23.38812 -22.11442 -21.42542 -19.91057 -19.29716 -19.21363 -18.58511 -17.50322 -17.36810 -16.62950 -16.54321 -16.28661 -15.71981 -15.66075 -15.21613 -15.02031 -14.88589 -14.50184 -13.76952 -13.58356 -13.43708 -13.37478 -12.98361 -12.61341 -12.44640 -12.27701 -12.16689 -12.08084 -11.96820 -11.66304 -11.22283 -11.14313 -11.00568 -10.69554 -9.51225 -9.27297 -8.55696 -6.31955 -0.37262 -0.12732 1.04483 1.34948 1.36087 1.42196 1.53117 1.77119 2.06645 2.35776 2.63145 2.72290 2.80025 3.03945 3.21104 3.50280 3.74737 3.80924 3.90248 4.07931 4.09607 4.18251 4.35377 4.65390 4.70761 4.77889 4.89385 5.02721 5.12234 5.13820 5.16609 5.28813 5.37130 5.56142 5.64645 5.81443 6.48275 6.54389 6.59711 6.89019 7.71566 8.64641 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.037698 B = 0.003391 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.569062 B = 8256.178079 C = 8916.623322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.001 3.999 3 Si 1.018 2.982 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.265 1.265 7 C -0.422 4.422 8 H 0.081 0.919 9 O -0.225 6.225 10 C 0.437 3.563 11 O -0.583 6.583 12 C -0.115 4.115 13 C -0.058 4.058 14 C -0.092 4.092 15 C 0.081 3.919 16 C 0.028 3.972 17 C -0.015 4.015 18 N -0.520 5.520 19 C 0.462 3.538 20 O -0.433 6.433 21 N -0.455 5.455 22 C 0.030 3.970 23 C -0.159 4.159 24 C -0.176 4.176 25 H 0.281 0.719 26 H 0.144 0.856 27 H 0.171 0.829 28 H 0.128 0.872 29 H 0.432 0.568 30 H 0.163 0.837 31 H 0.119 0.881 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.240 -21.631 1.840 24.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.200 4.200 3 Si 0.836 3.164 4 H -0.184 1.184 5 H -0.181 1.181 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.099 0.901 9 O -0.133 6.133 10 C 0.287 3.713 11 O -0.483 6.483 12 C -0.118 4.118 13 C -0.078 4.078 14 C -0.113 4.113 15 C -0.029 4.029 16 C -0.089 4.089 17 C -0.035 4.035 18 N -0.251 5.251 19 C 0.159 3.841 20 O -0.239 6.239 21 N -0.155 5.155 22 C -0.072 4.072 23 C -0.196 4.196 24 C -0.214 4.214 25 H 0.091 0.909 26 H 0.162 0.838 27 H 0.189 0.811 28 H 0.146 0.854 29 H 0.295 0.705 30 H 0.181 0.819 31 H 0.137 0.863 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.397 -21.839 1.263 23.809 hybrid contribution 0.145 0.892 0.345 0.967 sum -9.252 -20.948 1.609 22.957 Atomic orbital electron populations 1.70039 1.07490 1.29603 1.45830 1.26524 0.96955 1.02076 0.94490 0.84626 0.77710 0.74458 0.79567 1.18446 1.18059 1.18965 1.21504 0.92357 0.81033 1.54823 0.90091 1.83905 1.39549 1.13699 1.76147 1.21494 0.85732 0.86379 0.77670 1.90588 1.16613 1.88485 1.52627 1.18834 0.94734 0.88910 1.09370 1.20996 0.92098 0.98944 0.95744 1.19813 1.01113 0.86977 1.03380 1.18830 0.94617 0.85093 1.04342 1.18442 0.91075 0.91066 1.08274 1.20119 0.99986 0.87909 0.95520 1.70623 1.28965 0.99791 1.25711 1.20348 0.80274 0.85404 0.98091 1.84816 1.93646 1.08729 1.36736 1.45196 1.07177 1.03624 1.59476 1.22489 0.81390 0.95341 1.07995 1.23820 1.06217 0.90685 0.98879 1.23511 1.04191 1.01550 0.92152 0.90925 0.83843 0.81116 0.85428 0.70497 0.81928 0.86340 0.84429 0.85107 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.93 13.67 21.63 0.30 -51.64 16 2 C 0.00 0.05 5.50 84.89 0.47 0.52 16 3 Si 1.02 43.55 29.55 68.60 2.03 45.58 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.42 -26.14 9.65 67.96 0.66 -25.48 16 8 H 0.08 5.13 6.86 -2.92 -0.02 5.11 16 9 O -0.23 -13.65 8.96 10.94 0.10 -13.55 16 10 C 0.44 24.14 7.83 70.26 0.55 24.69 16 11 O -0.58 -34.96 15.57 19.75 0.31 -34.65 16 12 C -0.11 -5.06 5.87 -20.12 -0.12 -5.17 16 13 C -0.06 -2.09 9.54 22.33 0.21 -1.88 16 14 C -0.09 -2.54 9.96 22.04 0.22 -2.32 16 15 C 0.08 2.35 6.87 38.93 0.27 2.62 16 16 C 0.03 1.01 7.21 39.36 0.28 1.29 16 17 C -0.02 -0.63 9.64 22.79 0.22 -0.41 16 18 N -0.52 -17.12 11.32 -306.53 -3.47 -20.59 16 19 C 0.46 11.13 8.83 179.75 1.59 12.71 16 20 O -0.43 -6.49 10.95 -85.58 -0.94 -7.43 16 21 N -0.45 -9.96 3.15 -609.05 -1.92 -11.88 16 22 C 0.03 0.38 6.87 44.99 0.31 0.68 16 23 C -0.16 -1.06 9.87 30.62 0.30 -0.76 16 24 C -0.18 -1.79 10.40 30.62 0.32 -1.48 16 25 H 0.28 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.14 5.44 7.58 -2.91 -0.02 5.42 16 27 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 28 H 0.13 5.47 7.63 -2.91 -0.02 5.44 16 29 H 0.43 1.65 8.56 -74.05 -0.63 1.01 16 30 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 0.72 5.01 -2.39 -0.01 0.71 16 32 H 0.14 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -82.65 307.11 2.22 -80.43 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.54 Total: 8.71 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.28 Total: 5.01 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -5.09 Total: -84.10 kcal Atomic # 8 Polarization: -55.10 SS G_CDS: -0.53 Total: -55.63 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -82.65 2.22 -80.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850250106.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.581 kcal (2) G-P(sol) polarization free energy of solvation -82.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds