Wall clock time and date at job start Tue Mar 31 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28432 * 125.19271 * 2 1 4 4 C 1.30850 * 111.00041 * 179.72912 * 3 2 1 5 5 C 1.39783 * 107.89418 * 0.45336 * 4 3 2 6 6 Cl 1.73599 * 127.34405 * 179.83126 * 5 4 3 7 7 C 1.36796 * 125.19348 * 180.02562 * 2 1 3 8 8 C 1.46870 * 126.91432 * 0.02642 * 7 2 1 9 9 O 1.21564 * 120.00287 * 179.97438 * 8 7 2 10 10 O 1.34839 * 119.99958 * 359.97227 * 8 7 2 11 11 C 1.45196 * 117.00260 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47439 * 180.02562 * 11 10 8 13 13 O 1.42899 * 109.46702 * 64.99905 * 12 11 10 14 14 C 1.42908 * 113.99621 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47009 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00153 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99496 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00131 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46923 * 60.00210 * 19 17 15 21 21 H 1.48505 * 109.47104 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47353 * 299.99889 * 19 17 15 23 23 H 1.08996 * 109.47373 * 269.98629 * 1 2 3 24 24 H 1.08998 * 109.46735 * 29.98126 * 1 2 3 25 25 H 1.08998 * 109.47032 * 149.98151 * 1 2 3 26 26 H 1.07994 * 126.05614 * 180.30480 * 4 3 2 27 27 H 1.09007 * 109.47163 * 300.00137 * 11 10 8 28 28 H 1.09003 * 109.47003 * 59.99576 * 11 10 8 29 29 H 1.09000 * 109.47539 * 184.99974 * 12 11 10 30 30 H 1.09004 * 109.47021 * 305.00278 * 12 11 10 31 31 H 1.08996 * 109.47162 * 299.99700 * 14 13 12 32 32 H 1.08995 * 109.47153 * 60.00260 * 14 13 12 33 33 H 0.97001 * 119.99436 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4737 0.7288 0.0058 5 6 3.5640 -0.6661 -0.0006 6 17 5.0093 -1.6278 -0.0010 7 6 2.2534 -1.1179 -0.0005 8 6 1.8022 -2.5156 -0.0017 9 8 2.6173 -3.4175 -0.0025 10 8 0.4838 -2.7984 -0.0018 11 6 0.1106 -4.2016 -0.0024 12 6 -1.4145 -4.3237 -0.0031 13 8 -1.9342 -3.7938 -1.2242 14 6 -3.3580 -3.8594 -1.3269 15 6 -3.7938 -3.2772 -2.6469 16 1 -3.0571 -2.8957 -3.3383 17 6 -5.1330 -3.2316 -2.9718 18 7 -6.0300 -3.6967 -2.1299 19 14 -5.6732 -2.5094 -4.6075 20 1 -5.0611 -3.2839 -5.7169 21 1 -7.1529 -2.5777 -4.7143 22 1 -5.2352 -1.0930 -4.6921 23 1 -0.3634 -0.0002 1.0276 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5141 26 1 4.3040 1.4193 0.0117 27 1 0.5138 -4.6844 -0.8926 28 1 0.5138 -4.6852 0.8874 29 1 -1.6951 -5.3732 0.0860 30 1 -1.8241 -3.7654 0.8387 31 1 -3.6792 -4.8991 -1.2651 32 1 -3.8076 -3.2912 -0.5127 33 1 -6.9722 -3.6643 -2.3583 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850318569.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:32 Heat of formation + Delta-G solvation = -77.373730 kcal Electronic energy + Delta-G solvation = -20227.411244 eV Core-core repulsion = 16701.831209 eV Total energy + Delta-G solvation = -3525.580035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.82848 -41.36804 -38.76279 -37.80515 -37.44777 -34.94888 -34.46915 -32.48290 -31.42740 -29.03133 -28.20951 -25.64001 -24.51600 -23.32791 -22.89718 -21.68213 -19.46133 -18.70253 -18.19720 -18.14576 -17.48663 -17.03002 -16.85923 -16.36664 -16.22087 -15.76008 -15.40095 -14.93058 -14.53259 -14.29375 -14.04531 -13.79774 -13.57623 -13.18505 -12.97218 -12.93602 -12.91426 -12.69124 -12.45398 -12.04138 -11.84202 -11.80892 -11.63181 -11.28717 -10.88726 -10.58639 -10.26175 -9.97827 -8.31828 -6.43472 -0.36060 0.68348 1.22427 1.26987 1.41491 1.44638 1.53175 1.57645 1.60201 2.34292 3.02811 3.05088 3.21188 3.41198 3.74253 3.89824 4.11113 4.13415 4.28411 4.35904 4.41308 4.51852 4.62194 4.74679 4.87855 4.98793 5.10994 5.20491 5.37823 5.54933 5.96151 6.36280 6.51033 6.68965 6.80363 7.28287 8.79858 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.003576 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.212102 B = 7827.143027 C = 8495.236432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.251 5.251 3 N -0.262 5.262 4 C 0.022 3.978 5 C -0.089 4.089 6 Cl -0.002 7.002 7 C -0.034 4.034 8 C 0.538 3.462 9 O -0.499 6.499 10 O -0.347 6.347 11 C 0.079 3.921 12 C 0.054 3.946 13 O -0.408 6.408 14 C 0.209 3.791 15 C -0.549 4.549 16 H 0.060 0.940 17 C 0.011 3.989 18 N -0.929 5.929 19 Si 0.977 3.023 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.265 1.265 23 H 0.109 0.891 24 H 0.118 0.882 25 H 0.102 0.898 26 H 0.235 0.765 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.062 0.938 31 H -0.010 1.010 32 H -0.006 1.006 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.062 6.996 7.132 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.041 5.041 3 N -0.096 5.096 4 C -0.153 4.153 5 C -0.128 4.128 6 Cl 0.026 6.974 7 C -0.161 4.161 8 C 0.381 3.619 9 O -0.386 6.386 10 O -0.263 6.263 11 C 0.006 3.994 12 C -0.023 4.023 13 O -0.328 6.328 14 C 0.135 3.865 15 C -0.586 4.586 16 H 0.078 0.922 17 C -0.188 4.188 18 N -0.568 5.568 19 Si 0.800 3.200 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.189 1.189 23 H 0.127 0.873 24 H 0.137 0.863 25 H 0.120 0.880 26 H 0.251 0.749 27 H 0.094 0.906 28 H 0.132 0.868 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.008 0.992 32 H 0.012 0.988 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.411 7.520 7.016 19.367 hybrid contribution -0.078 -1.003 -0.411 1.087 sum 16.334 6.516 6.605 18.785 Atomic orbital electron populations 1.22735 0.69796 1.07155 1.06592 1.45974 1.09007 1.01202 1.47913 1.73319 1.03960 1.13598 1.18762 1.24165 0.94433 0.92139 1.04522 1.21547 0.87186 0.93484 1.10591 1.98372 1.31810 1.70417 1.96761 1.20346 0.91327 0.86844 1.17588 1.19597 0.81482 0.87351 0.73466 1.90907 1.54944 1.46664 1.46042 1.86643 1.24176 1.31975 1.83533 1.23339 0.94163 0.77536 1.04335 1.22650 0.91456 0.99598 0.88555 1.87861 1.23661 1.83322 1.37959 1.19849 0.75986 0.94442 0.96273 1.21347 0.92737 1.41442 1.03115 0.92152 1.25859 0.95932 0.95415 1.01600 1.70046 1.02092 1.46701 1.37933 0.85324 0.77182 0.79201 0.78281 1.19353 1.20124 1.18927 0.87250 0.86332 0.87955 0.74876 0.90623 0.86848 0.89929 0.92003 0.99242 0.98829 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.58 10.81 127.77 1.38 2.96 16 2 N -0.25 -6.13 3.75 -355.98 -1.34 -7.46 16 3 N -0.26 -6.00 11.89 -57.08 -0.68 -6.68 16 4 C 0.02 0.43 12.03 85.21 1.03 1.46 16 5 C -0.09 -2.13 6.88 22.74 0.16 -1.97 16 6 Cl 0.00 -0.05 28.13 -2.72 -0.08 -0.13 16 7 C -0.03 -0.92 6.96 40.72 0.28 -0.63 16 8 C 0.54 15.92 7.93 70.08 0.56 16.48 16 9 O -0.50 -16.06 15.63 19.63 0.31 -15.75 16 10 O -0.35 -10.26 7.66 -54.85 -0.42 -10.68 16 11 C 0.08 2.19 5.86 71.98 0.42 2.61 16 12 C 0.05 1.75 6.33 71.98 0.46 2.20 16 13 O -0.41 -18.36 10.30 -145.56 -1.50 -19.86 16 14 C 0.21 11.01 5.69 71.24 0.41 11.41 16 15 C -0.55 -31.27 9.43 25.60 0.24 -31.03 16 16 H 0.06 3.42 7.81 -2.91 -0.02 3.40 16 17 C 0.01 0.60 5.46 84.65 0.46 1.06 16 18 N -0.93 -53.79 13.29 21.45 0.28 -53.50 16 19 Si 0.98 42.91 29.54 68.60 2.03 44.94 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.10 2.61 6.15 -2.39 -0.01 2.59 16 26 H 0.23 2.51 8.06 -2.91 -0.02 2.49 16 27 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 31 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 33 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -67.68 314.34 5.13 -62.55 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: 1.13 Total: 2.03 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 5.39 Total: 4.55 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -1.73 Total: -67.64 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -1.61 Total: -46.30 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -0.08 Total: -0.13 kcal Total: -67.68 5.13 -62.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850318569.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.823 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds