Wall clock time and date at job start Tue Mar 31 2020 05:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 120.00090 * 2 1 4 4 H 1.48500 * 109.47279 * 270.00479 * 3 2 1 5 5 H 1.48503 * 109.46978 * 30.00175 * 3 2 1 6 6 H 1.48498 * 109.47305 * 150.00105 * 3 2 1 7 7 C 1.38756 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99846 * 180.02562 * 7 2 1 9 9 O 1.34918 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.34310 * 116.99927 * 180.02562 * 9 7 2 11 11 O 1.21213 * 120.00241 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00066 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.47402 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47402 * 180.02562 * 13 12 10 15 15 C 1.38255 * 119.99838 * 265.00195 * 14 13 12 16 16 C 1.38220 * 119.99681 * 179.97438 * 15 14 13 17 17 C 1.38253 * 120.00046 * 0.05260 * 16 15 14 18 18 C 1.38205 * 119.99884 * 359.94758 * 17 16 15 19 19 C 1.38208 * 119.99804 * 85.02067 * 14 13 12 20 20 C 1.50697 * 120.00408 * 0.02562 * 19 14 13 21 21 F 1.39897 * 109.47321 * 179.97438 * 20 19 14 22 22 F 1.39902 * 109.47052 * 299.99781 * 20 19 14 23 23 F 1.39898 * 109.46827 * 59.99450 * 20 19 14 24 24 H 0.96991 * 119.99874 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47415 * 60.00393 * 12 10 9 26 26 H 1.08999 * 109.47315 * 300.00371 * 12 10 9 27 27 H 1.09003 * 109.46770 * 60.00163 * 13 12 10 28 28 H 1.08991 * 109.47257 * 300.00330 * 13 12 10 29 29 H 1.08000 * 120.00604 * 359.72524 * 15 14 13 30 30 H 1.08002 * 119.99604 * 180.02562 * 16 15 14 31 31 H 1.08005 * 119.99964 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.99783 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4459 2.6526 0.7001 6 1 3.5460 1.4402 0.7000 7 6 2.0082 -1.2017 -0.0005 8 1 3.0883 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0001 12 6 1.3810 -4.8393 -0.0011 13 6 2.4347 -5.9486 -0.0004 14 6 1.7506 -7.2913 -0.0016 15 6 1.5284 -7.9550 1.1907 16 6 0.9004 -9.1863 1.1896 17 6 0.4955 -9.7547 -0.0038 18 6 0.7176 -9.0912 -1.1957 19 6 1.3456 -7.8595 -1.1946 20 6 1.5887 -7.1365 -2.4943 21 9 1.0953 -7.9045 -3.5545 22 9 0.9345 -5.9001 -2.4696 23 9 2.9623 -6.9340 -2.6654 24 1 -0.4849 0.8400 0.0004 25 1 0.7586 -4.9296 -0.8914 26 1 0.7578 -4.9300 0.8886 27 1 3.0568 -5.8581 0.8902 28 1 3.0582 -5.8581 -0.8897 29 1 1.8491 -7.5133 2.1227 30 1 0.7265 -9.7046 2.1211 31 1 0.0052 -10.7171 -0.0047 32 1 0.4009 -9.5351 -2.1279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869664513.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:15 Heat of formation + Delta-G solvation = -230.323869 kcal Electronic energy + Delta-G solvation = -22807.869734 eV Core-core repulsion = 18703.940641 eV Total energy + Delta-G solvation = -4103.929093 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.30936 -48.81399 -48.75679 -41.14486 -40.43162 -37.45821 -35.14827 -34.31289 -32.89040 -31.16637 -27.90618 -26.99703 -25.69965 -23.33459 -22.54909 -21.42435 -19.91040 -19.61410 -19.52141 -19.32877 -18.50609 -17.17748 -16.93346 -16.49399 -16.23966 -16.21704 -15.71823 -15.64924 -15.46391 -15.20313 -15.11404 -14.88847 -14.63189 -14.26143 -14.05622 -13.88577 -13.64243 -13.45718 -13.10709 -12.98154 -12.44156 -12.27078 -12.17397 -12.10068 -11.99861 -11.90245 -11.08306 -10.71277 -10.18340 -9.84925 -8.55289 -6.35789 -0.06062 0.27383 1.29182 1.32940 1.50666 1.59519 1.65709 2.10716 2.49516 2.67379 2.78563 2.95658 2.98843 3.32900 3.70153 3.74871 3.91909 4.04063 4.19568 4.39893 4.42303 4.45408 4.68301 4.75443 4.84341 4.96413 5.05014 5.16778 5.26026 5.41033 5.44404 5.81882 5.85820 6.64124 6.89469 7.75004 8.65695 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.004191 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.951634 B = 6678.912337 C = 7131.693861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.004 4.004 3 Si 1.018 2.982 4 H -0.261 1.261 5 H -0.258 1.258 6 H -0.263 1.263 7 C -0.425 4.425 8 H 0.081 0.919 9 O -0.246 6.246 10 C 0.396 3.604 11 O -0.582 6.582 12 C -0.102 4.102 13 C -0.079 4.079 14 C -0.043 4.043 15 C -0.121 4.121 16 C -0.077 4.077 17 C -0.118 4.118 18 C -0.076 4.076 19 C -0.197 4.197 20 C 0.500 3.500 21 F -0.174 7.174 22 F -0.183 7.183 23 F -0.184 7.184 24 H 0.279 0.721 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.251 -21.294 0.492 21.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.204 4.204 3 Si 0.837 3.163 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.500 4.500 8 H 0.099 0.901 9 O -0.155 6.155 10 C 0.245 3.755 11 O -0.481 6.481 12 C -0.139 4.139 13 C -0.116 4.116 14 C -0.043 4.043 15 C -0.139 4.139 16 C -0.094 4.094 17 C -0.136 4.136 18 C -0.094 4.094 19 C -0.198 4.198 20 C 0.446 3.554 21 F -0.155 7.155 22 F -0.164 7.164 23 F -0.166 7.166 24 H 0.089 0.911 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.131 -21.104 0.452 21.139 hybrid contribution 0.561 1.227 -0.542 1.454 sum -0.570 -19.877 -0.091 19.886 Atomic orbital electron populations 1.70078 1.07678 1.29415 1.46886 1.26568 0.96908 1.02378 0.94596 0.84622 0.77719 0.74455 0.79517 1.18566 1.18144 1.18708 1.21447 0.92174 0.81289 1.55109 0.90123 1.83904 1.40434 1.14314 1.76815 1.24378 0.86716 0.88316 0.76123 1.90509 1.17087 1.88701 1.51767 1.21494 0.99165 0.86285 1.06988 1.20524 0.96591 0.89559 1.04958 1.19545 0.96546 0.94947 0.93246 1.21383 0.99578 0.96023 0.96932 1.21816 0.93690 0.93815 1.00127 1.21588 0.99667 1.01404 0.90891 1.21275 0.95034 0.91679 1.01376 1.19891 1.09995 0.99320 0.90586 1.18686 0.73786 0.77093 0.85811 1.93142 1.87575 1.74966 1.59859 1.93119 1.81448 1.45537 1.96323 1.93167 1.32218 1.95142 1.96037 0.91142 0.87080 0.86657 0.89116 0.91324 0.83402 0.81579 0.81380 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.76 13.67 21.63 0.30 -54.46 16 2 C 0.00 -0.26 5.49 84.87 0.47 0.21 16 3 Si 1.02 44.58 29.55 68.60 2.03 46.60 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.42 -26.74 9.64 67.94 0.66 -26.09 16 8 H 0.08 5.15 6.86 -2.91 -0.02 5.13 16 9 O -0.25 -15.17 9.75 14.89 0.15 -15.03 16 10 C 0.40 20.90 7.91 71.24 0.56 21.46 16 11 O -0.58 -33.13 15.22 20.76 0.32 -32.81 16 12 C -0.10 -3.92 5.57 29.85 0.17 -3.76 16 13 C -0.08 -2.58 3.98 29.85 0.12 -2.46 16 14 C -0.04 -1.07 5.10 -19.87 -0.10 -1.17 16 15 C -0.12 -2.25 9.68 22.27 0.22 -2.04 16 16 C -0.08 -0.98 10.05 22.27 0.22 -0.75 16 17 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 18 C -0.08 -1.32 9.43 22.27 0.21 -1.11 16 19 C -0.20 -4.79 5.37 -19.87 -0.11 -4.90 16 20 C 0.50 14.34 2.83 71.23 0.20 14.54 16 21 F -0.17 -4.43 15.97 44.97 0.72 -3.71 16 22 F -0.18 -6.17 13.60 44.97 0.61 -5.56 16 23 F -0.18 -5.84 15.33 44.97 0.69 -5.15 16 24 H 0.28 15.28 8.31 -92.72 -0.77 14.51 16 25 H 0.11 4.25 5.01 -2.39 -0.01 4.23 16 26 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 27 H 0.09 2.88 8.01 -2.39 -0.02 2.86 16 28 H 0.07 2.51 5.70 -2.39 -0.01 2.50 16 29 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 31 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.15 2.11 7.16 -2.91 -0.02 2.09 16 Total: -1.00 -77.26 292.87 8.81 -68.44 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.18 Total: 8.96 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 2.84 Total: -7.29 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.30 Total: -54.46 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: 0.46 Total: -47.84 kcal Atomic # 9 Polarization: -16.43 SS G_CDS: 2.02 Total: -14.41 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -77.26 8.81 -68.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869664513.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.880 kcal (2) G-P(sol) polarization free energy of solvation -77.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds