Wall clock time and date at job start Tue Mar 31 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99694 * 2 1 4 4 C 1.53001 * 109.46952 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47265 * 64.99716 * 4 3 2 6 6 C 1.46505 * 119.99800 * 274.55192 * 5 4 3 7 7 C 1.50705 * 109.47007 * 263.53831 * 6 5 4 8 8 H 1.08000 * 120.00195 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99437 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99408 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00425 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46896 * 90.00123 * 11 9 7 13 13 H 1.48501 * 109.47419 * 210.00334 * 11 9 7 14 14 H 1.48497 * 109.47047 * 330.00548 * 11 9 7 15 15 C 1.34769 * 120.00221 * 94.55882 * 5 4 3 16 16 O 1.21588 * 119.99932 * 4.35746 * 15 5 4 17 17 C 1.47519 * 120.00244 * 184.36570 * 15 5 4 18 18 C 1.36781 * 126.92997 * 174.00924 * 17 15 5 19 19 C 1.41408 * 103.83997 * 180.02562 * 18 17 15 20 20 Cl 1.73602 * 126.72871 * 180.02562 * 19 18 17 21 21 N 1.30228 * 106.54877 * 359.97438 * 19 18 17 22 22 O 1.20878 * 111.95919 * 359.70035 * 21 19 18 23 23 H 1.08995 * 109.46757 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47184 * 300.00350 * 1 2 3 25 25 H 1.08991 * 109.46838 * 60.00542 * 1 2 3 26 26 H 1.08992 * 109.47315 * 59.99548 * 3 2 1 27 27 H 1.09002 * 109.46974 * 299.99331 * 3 2 1 28 28 H 1.09000 * 109.46647 * 304.99226 * 4 3 2 29 29 H 1.08997 * 109.47241 * 185.00197 * 4 3 2 30 30 H 1.08999 * 109.47354 * 23.53367 * 6 5 4 31 31 H 1.08999 * 109.47143 * 143.54006 * 6 5 4 32 32 H 0.97001 * 119.99947 * 180.02562 * 10 9 7 33 33 H 1.08005 * 128.08524 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0098 -0.8951 -1.3747 7 6 5.4054 -1.3901 -1.0946 8 1 6.1887 -0.6878 -0.8506 9 6 5.6823 -2.7396 -1.1509 10 7 6.9001 -3.1717 -0.9060 11 14 4.3277 -3.9544 -1.5737 12 1 4.2839 -4.1548 -3.0444 13 1 4.6000 -5.2521 -0.9050 14 1 3.0222 -3.4218 -1.1077 15 6 4.3495 1.3365 -2.2922 16 8 4.3973 2.5448 -2.1658 17 6 4.7004 0.7155 -3.5835 18 6 4.9860 1.3609 -4.7551 19 6 5.2492 0.3105 -5.6645 20 17 5.6784 0.4702 -7.3391 21 7 5.1077 -0.8001 -4.9994 22 8 4.8103 -0.6008 -3.8448 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.8514 0.5684 0.8410 29 1 3.9785 2.1766 0.0890 30 1 3.3173 -1.3359 -0.6576 31 1 3.7184 -1.1822 -2.3850 32 1 7.0951 -4.1210 -0.9460 33 1 5.0058 2.4245 -4.9422 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874349492.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:19 Heat of formation + Delta-G solvation = -27.104919 kcal Electronic energy + Delta-G solvation = -21370.630916 eV Core-core repulsion = 17847.230699 eV Total energy + Delta-G solvation = -3523.400216 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.21535 -40.96305 -38.74961 -38.23434 -36.94002 -34.75617 -34.58703 -33.37080 -31.38870 -29.49200 -27.22354 -25.70220 -24.74408 -24.32515 -23.37652 -21.33001 -19.30209 -18.97694 -18.69946 -17.81017 -17.52977 -17.12281 -16.67018 -16.44593 -16.02992 -15.77022 -15.42715 -14.95946 -14.80706 -14.39638 -13.83945 -13.75298 -13.52050 -13.49060 -13.13032 -12.79445 -12.71165 -12.49310 -12.17020 -12.05745 -11.94487 -11.68789 -11.39784 -11.16290 -10.96578 -10.74025 -10.55413 -9.60905 -8.27675 -6.32671 -0.37008 0.27790 0.70225 1.38061 1.43071 1.49742 1.53068 1.87506 2.16401 2.37189 2.93950 3.05888 3.09824 3.56041 3.62991 3.90141 4.13150 4.22086 4.42254 4.56858 4.57387 4.59930 4.63554 4.76012 4.88946 4.93711 5.02785 5.46553 5.49303 6.07985 6.27673 6.38684 6.64582 6.76105 6.93988 7.32302 8.88441 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.012124 B = 0.007338 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.900615 B = 3815.041097 C = 5159.001609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.053 3.947 4 C 0.110 3.890 5 N -0.569 5.569 6 C 0.219 3.781 7 C -0.532 4.532 8 H 0.035 0.965 9 C 0.031 3.969 10 N -0.940 5.940 11 Si 0.921 3.079 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.235 1.235 15 C 0.600 3.400 16 O -0.548 6.548 17 C -0.068 4.068 18 C -0.137 4.137 19 C 0.048 3.952 20 Cl 0.048 6.952 21 N -0.365 5.365 22 O 0.148 5.852 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.091 0.909 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.267 0.733 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 9.196 -4.488 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.332 6.332 3 C -0.024 4.024 4 C -0.012 4.012 5 N -0.297 5.297 6 C 0.097 3.903 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.168 4.168 10 N -0.579 5.579 11 Si 0.744 3.256 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.157 1.157 15 C 0.385 3.615 16 O -0.429 6.429 17 C -0.134 4.134 18 C -0.159 4.159 19 C -0.135 4.135 20 Cl 0.076 6.924 21 N -0.067 5.067 22 O 0.073 5.927 23 H 0.107 0.893 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -11.406 8.219 -4.864 14.876 hybrid contribution 0.045 -0.042 -0.369 0.374 sum -11.361 8.176 -5.234 14.944 Atomic orbital electron populations 1.22887 0.79808 1.03413 1.00836 1.87963 1.21287 1.28405 1.95571 1.22983 0.92574 0.84941 1.01871 1.21810 0.93586 1.00408 0.85357 1.47877 1.60939 1.08307 1.12618 1.19832 0.96439 0.75882 0.98178 1.21396 0.94713 0.92743 1.48144 0.94650 1.25538 0.97290 0.99979 0.94014 1.70023 1.21736 1.15555 1.50634 0.86093 0.81432 0.78863 0.79191 1.19563 1.20774 1.15748 1.16618 0.77711 0.85560 0.81595 1.90760 1.56473 1.12846 1.82775 1.24332 1.06862 0.83847 0.98331 1.22956 1.02002 1.02676 0.88316 1.24251 1.06746 0.90213 0.92255 1.98392 1.91011 1.97102 1.05941 1.73866 1.15691 1.24715 0.92394 1.85515 1.62507 1.24893 1.19772 0.89335 0.92303 0.93731 0.89084 0.93208 0.89181 0.87294 0.91848 0.94508 0.92433 0.76299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -11.96 9.22 -148.98 -1.37 -13.33 16 3 C 0.05 1.36 6.28 71.98 0.45 1.81 16 4 C 0.11 3.45 5.91 86.38 0.51 3.96 16 5 N -0.57 -22.26 2.46 -829.94 -2.04 -24.30 16 6 C 0.22 9.73 3.58 85.63 0.31 10.04 16 7 C -0.53 -28.83 9.10 25.60 0.23 -28.59 16 8 H 0.04 2.17 8.06 -2.91 -0.02 2.14 16 9 C 0.03 1.74 5.47 84.66 0.46 2.21 16 10 N -0.94 -57.28 13.96 21.45 0.30 -56.99 16 11 Si 0.92 42.57 27.47 68.60 1.88 44.45 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.23 -9.82 6.54 99.48 0.65 -9.17 16 15 C 0.60 23.43 7.61 86.69 0.66 24.08 16 16 O -0.55 -21.34 16.41 -3.99 -0.07 -21.41 16 17 C -0.07 -2.60 6.87 24.38 0.17 -2.44 16 18 C -0.14 -4.28 10.96 22.71 0.25 -4.03 16 19 C 0.05 1.59 7.97 85.71 0.68 2.28 16 20 Cl 0.05 1.22 29.33 -2.72 -0.08 1.14 16 21 N -0.36 -14.79 12.05 -51.03 -0.61 -15.41 16 22 O 0.15 6.37 7.38 65.75 0.49 6.86 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 28 H 0.09 2.90 8.11 -2.39 -0.02 2.88 16 29 H 0.11 3.16 7.24 -2.39 -0.02 3.14 16 30 H 0.06 2.79 5.91 -2.39 -0.01 2.78 16 31 H 0.04 1.67 4.83 -2.39 -0.01 1.66 16 32 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 33 H 0.22 5.21 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -66.94 305.01 4.55 -62.39 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.09 Total: 5.49 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 4.97 Total: 11.09 kcal Atomic # 7 Polarization: -94.34 SS G_CDS: -2.36 Total: -96.69 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.95 Total: -27.88 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 1.88 Total: 44.45 kcal Atomic # 17 Polarization: 1.22 SS G_CDS: -0.08 Total: 1.14 kcal Total: -66.94 4.55 -62.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874349492.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.285 kcal (2) G-P(sol) polarization free energy of solvation -66.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds