Wall clock time and date at job start Tue Mar 31 2020 06:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00061 * 2 1 4 4 H 1.48501 * 109.47084 * 270.00027 * 3 2 1 5 5 H 1.48493 * 109.47304 * 29.99823 * 3 2 1 6 6 H 1.48500 * 109.47090 * 150.00166 * 3 2 1 7 7 C 1.37880 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47034 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00047 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99797 * 180.02562 * 11 10 9 14 14 N 1.40106 * 120.00089 * 179.72705 * 13 11 10 15 15 C 1.40173 * 120.00000 * 185.31780 * 14 13 11 16 16 C 1.38965 * 120.05696 * 215.07069 * 15 14 13 17 17 F 1.35094 * 120.03176 * 0.02562 * 16 15 14 18 18 C 1.38344 * 119.93097 * 179.72251 * 16 15 14 19 19 C 1.38455 * 120.06780 * 0.55452 * 18 16 15 20 20 F 1.35094 * 119.94085 * 179.74248 * 19 18 16 21 21 C 1.38458 * 120.11835 * 359.72223 * 19 18 16 22 22 C 1.38344 * 120.06050 * 359.97438 * 21 19 18 23 23 F 1.35097 * 120.03104 * 180.02562 * 22 21 19 24 24 H 0.97002 * 120.00114 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47196 * 60.00452 * 9 7 2 26 26 H 1.09007 * 109.47446 * 300.00200 * 9 7 2 27 27 H 1.09004 * 109.46706 * 60.00346 * 10 9 7 28 28 H 1.08999 * 109.47075 * 300.00553 * 10 9 7 29 29 H 0.97002 * 120.00144 * 359.97438 * 13 11 10 30 30 H 0.96993 * 119.99628 * 5.32028 * 14 13 11 31 31 H 1.08012 * 119.96437 * 180.25315 * 18 16 15 32 32 H 1.08001 * 119.97078 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2790 -4.9671 0.0000 13 7 2.1656 -6.1344 0.0007 14 7 1.4651 -7.3477 0.0071 15 6 2.1619 -8.5587 0.1203 16 6 1.7097 -9.6874 -0.5525 17 9 0.5980 -9.6188 -1.3170 18 6 2.4027 -10.8798 -0.4436 19 6 3.5392 -10.9522 0.3439 20 9 4.2109 -12.1193 0.4526 21 6 3.9886 -9.8306 1.0199 22 6 3.3031 -8.6340 0.9096 23 9 3.7425 -7.5398 1.5690 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6043 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 3.1356 -6.1344 0.0004 30 1 0.4980 -7.3497 -0.0668 31 1 2.0540 -11.7564 -0.9695 32 1 4.8756 -9.8897 1.6332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885154044.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:04 Heat of formation + Delta-G solvation = -112.260322 kcal Electronic energy + Delta-G solvation = -21700.625362 eV Core-core repulsion = 17634.108639 eV Total energy + Delta-G solvation = -4066.516722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.38629 -49.36941 -49.33962 -39.72692 -38.85777 -35.90606 -33.55320 -32.23879 -31.00354 -30.88915 -28.14451 -25.60472 -23.79034 -23.05008 -21.96257 -20.27924 -18.96068 -18.34028 -18.13150 -17.22208 -16.62923 -16.50749 -16.25937 -16.14250 -15.71828 -15.67023 -15.45419 -15.13070 -15.10289 -14.66068 -14.47899 -13.52013 -13.16775 -12.92897 -12.61866 -12.42612 -12.26356 -12.18351 -11.34891 -11.25865 -10.96518 -10.64872 -10.05839 -9.80835 -9.56275 -9.40167 -9.35700 -9.15343 -8.37478 -7.53922 -6.01096 -4.06065 0.34722 0.41721 1.90572 2.71038 3.03016 3.13668 3.30971 3.37314 3.39734 3.73771 3.85590 4.00040 4.27830 4.33402 4.44110 5.04437 5.18618 5.22840 5.33436 5.34220 5.37351 5.43642 6.07200 6.08073 6.13341 6.58383 6.81712 7.29528 7.67422 7.68238 7.76559 7.99849 8.30847 8.59661 9.01703 9.57927 11.09808 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.036374 B = 0.002970 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.596772 B = 9425.218551 C =10027.385739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.118 4.118 11 C 0.511 3.489 12 O -0.531 6.531 13 N -0.533 5.533 14 N -0.545 5.545 15 C 0.138 3.862 16 C 0.102 3.898 17 F -0.119 7.119 18 C -0.156 4.156 19 C 0.111 3.889 20 F -0.127 7.127 21 C -0.156 4.156 22 C 0.093 3.907 23 F -0.118 7.118 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.419 0.581 30 H 0.440 0.560 31 H 0.158 0.842 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.860 -23.636 0.414 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.159 4.159 11 C 0.300 3.700 12 O -0.404 6.404 13 N -0.283 5.283 14 N -0.273 5.273 15 C 0.032 3.968 16 C 0.077 3.923 17 F -0.098 7.098 18 C -0.177 4.177 19 C 0.089 3.911 20 F -0.106 7.106 21 C -0.177 4.177 22 C 0.068 3.932 23 F -0.097 7.097 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.260 0.740 30 H 0.284 0.716 31 H 0.175 0.825 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.880 -23.290 0.413 24.590 hybrid contribution 0.542 0.813 0.007 0.977 sum 8.422 -22.477 0.421 24.007 Atomic orbital electron populations 1.69993 1.06088 1.26721 1.49938 1.25025 0.94841 0.99305 0.95179 0.86561 0.79765 0.83354 0.78101 1.20636 1.21202 1.19824 1.21179 0.92993 0.90798 1.51759 0.92432 1.18937 0.93099 0.89071 0.98877 1.21897 1.00898 0.89918 1.03202 1.22057 0.89176 0.83848 0.74919 1.90696 1.14174 1.86799 1.48747 1.45588 1.08025 0.95973 1.78686 1.43035 1.07088 0.93728 1.83450 1.17666 0.95290 0.86257 0.97586 1.16534 0.87904 0.93255 0.94613 1.91563 1.48852 1.96787 1.72578 1.20902 0.95947 0.98309 1.02526 1.16587 0.92554 0.81940 0.99972 1.91547 1.79063 1.45209 1.94740 1.20930 1.02851 0.90447 1.03423 1.16655 0.96632 0.84267 0.95622 1.91541 1.88712 1.51129 1.78287 0.92863 0.95611 0.95620 0.89512 0.89595 0.73965 0.71576 0.82474 0.82530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.12 -2.27 5.64 -27.88 -0.16 -2.43 16 11 C 0.51 9.51 7.95 -10.99 -0.09 9.42 16 12 O -0.53 -12.05 15.83 5.56 0.09 -11.96 16 13 N -0.53 -7.66 5.62 31.22 0.18 -7.48 16 14 N -0.55 -7.26 6.22 32.53 0.20 -7.06 16 15 C 0.14 1.48 6.54 -83.50 -0.55 0.93 16 16 C 0.10 0.97 7.31 -39.27 -0.29 0.68 16 17 F -0.12 -1.27 16.96 2.25 0.04 -1.23 16 18 C -0.16 -1.17 10.00 -39.46 -0.39 -1.56 16 19 C 0.11 0.84 7.30 -39.42 -0.29 0.56 16 20 F -0.13 -1.01 17.26 2.25 0.04 -0.97 16 21 C -0.16 -1.19 10.00 -39.46 -0.39 -1.58 16 22 C 0.09 0.90 7.09 -39.27 -0.28 0.62 16 23 F -0.12 -1.29 15.09 2.25 0.03 -1.25 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.03 0.73 8.10 -51.92 -0.42 0.31 16 27 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 29 H 0.42 4.95 7.17 -182.59 -1.31 3.64 16 30 H 0.44 6.20 7.99 -182.60 -1.46 4.74 16 31 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 301.57 15.07 4.54 4.54 Total: -1.00 -32.54 301.57 -6.97 -39.50 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.84 Total: 1.75 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.96 Total: -5.88 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 1.11 Total: -40.84 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.11 Total: -3.45 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.54 -6.97 -39.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885154044.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.756 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds