Wall clock time and date at job start Tue Mar 31 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00061 * 2 1 4 4 H 1.48501 * 109.47084 * 270.00027 * 3 2 1 5 5 H 1.48493 * 109.47304 * 29.99823 * 3 2 1 6 6 H 1.48500 * 109.47090 * 150.00166 * 3 2 1 7 7 C 1.37880 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47034 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00047 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99797 * 180.02562 * 11 10 9 14 14 N 1.40106 * 120.00089 * 179.72705 * 13 11 10 15 15 C 1.40173 * 120.00000 * 185.31780 * 14 13 11 16 16 C 1.38965 * 120.05696 * 215.07069 * 15 14 13 17 17 F 1.35094 * 120.03176 * 0.02562 * 16 15 14 18 18 C 1.38344 * 119.93097 * 179.72251 * 16 15 14 19 19 C 1.38455 * 120.06780 * 0.55452 * 18 16 15 20 20 F 1.35094 * 119.94085 * 179.74248 * 19 18 16 21 21 C 1.38458 * 120.11835 * 359.72223 * 19 18 16 22 22 C 1.38344 * 120.06050 * 359.97438 * 21 19 18 23 23 F 1.35097 * 120.03104 * 180.02562 * 22 21 19 24 24 H 0.97002 * 120.00114 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47196 * 60.00452 * 9 7 2 26 26 H 1.09007 * 109.47446 * 300.00200 * 9 7 2 27 27 H 1.09004 * 109.46706 * 60.00346 * 10 9 7 28 28 H 1.08999 * 109.47075 * 300.00553 * 10 9 7 29 29 H 0.97002 * 120.00144 * 359.97438 * 13 11 10 30 30 H 0.96993 * 119.99628 * 5.32028 * 14 13 11 31 31 H 1.08012 * 119.96437 * 180.25315 * 18 16 15 32 32 H 1.08001 * 119.97078 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 0.0001 12 8 0.2790 -4.9671 0.0000 13 7 2.1656 -6.1344 0.0007 14 7 1.4651 -7.3477 0.0071 15 6 2.1619 -8.5587 0.1203 16 6 1.7097 -9.6874 -0.5525 17 9 0.5980 -9.6188 -1.3170 18 6 2.4027 -10.8798 -0.4436 19 6 3.5392 -10.9522 0.3439 20 9 4.2109 -12.1193 0.4526 21 6 3.9886 -9.8306 1.0199 22 6 3.3031 -8.6340 0.9096 23 9 3.7425 -7.5398 1.5690 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6043 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 3.1356 -6.1344 0.0004 30 1 0.4980 -7.3497 -0.0668 31 1 2.0540 -11.7564 -0.9695 32 1 4.8756 -9.8897 1.6332 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885154044.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:03 Heat of formation + Delta-G solvation = -133.478013 kcal Electronic energy + Delta-G solvation = -21701.545430 eV Core-core repulsion = 17634.108639 eV Total energy + Delta-G solvation = -4067.436790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.18581 -50.13904 -50.01221 -40.99353 -39.80885 -37.05231 -35.57848 -33.58978 -32.57682 -31.67233 -29.23475 -27.41732 -24.61447 -24.03433 -23.49208 -21.74732 -19.73539 -19.28564 -19.26234 -18.58884 -18.01934 -17.35449 -17.09552 -16.99024 -16.77403 -16.62808 -16.46555 -16.42778 -16.35783 -15.93224 -15.33635 -15.12041 -14.56893 -14.25108 -13.71935 -13.69147 -13.27139 -13.24825 -12.95587 -12.82182 -12.48516 -12.32852 -11.94699 -11.67575 -11.32722 -11.05462 -10.56855 -10.41133 -10.08374 -8.56084 -8.18001 -6.31758 -0.33240 -0.32529 0.82586 1.43873 1.46018 1.53846 1.57043 2.03489 2.40127 2.42984 2.96226 3.06524 3.15245 3.15716 3.50950 3.73909 3.84428 4.37098 4.44854 4.48868 4.51407 4.58786 4.63826 4.81497 4.99688 5.35976 5.50033 5.61313 5.65316 5.84521 6.10484 6.17900 6.50889 6.86724 7.25588 7.38603 8.94677 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.036374 B = 0.002970 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.596772 B = 9425.218551 C =10027.385739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.254 1.254 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.107 4.107 11 C 0.513 3.487 12 O -0.583 6.583 13 N -0.511 5.511 14 N -0.558 5.558 15 C 0.119 3.881 16 C 0.099 3.901 17 F -0.129 7.129 18 C -0.143 4.143 19 C 0.122 3.878 20 F -0.124 7.124 21 C -0.143 4.143 22 C 0.088 3.912 23 F -0.127 7.127 24 H 0.263 0.737 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.434 0.566 30 H 0.433 0.567 31 H 0.182 0.818 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.811 -25.004 0.514 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.005 3.995 10 C -0.148 4.148 11 C 0.302 3.698 12 O -0.461 6.461 13 N -0.259 5.259 14 N -0.288 5.288 15 C 0.016 3.984 16 C 0.074 3.926 17 F -0.107 7.107 18 C -0.163 4.163 19 C 0.101 3.899 20 F -0.102 7.102 21 C -0.163 4.163 22 C 0.064 3.936 23 F -0.105 7.105 24 H 0.071 0.929 25 H 0.004 0.996 26 H 0.003 0.997 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.278 0.722 30 H 0.276 0.724 31 H 0.199 0.801 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.929 -24.736 0.517 27.048 hybrid contribution -0.327 1.007 -0.020 1.059 sum 10.602 -23.729 0.497 25.995 Atomic orbital electron populations 1.70173 1.08314 1.27816 1.51485 1.26127 0.95703 1.03943 0.94672 0.85321 0.78707 0.77739 0.78484 1.19767 1.21367 1.17796 1.21701 0.94139 0.91395 1.50747 0.90292 1.18708 0.93669 0.92115 0.95049 1.21622 0.99382 0.88004 1.05750 1.21721 0.88306 0.84901 0.74922 1.90678 1.16227 1.87571 1.51611 1.45058 1.08455 0.95963 1.76421 1.43068 1.06933 0.93679 1.85129 1.17869 0.96064 0.85549 0.98872 1.16658 0.87803 0.93528 0.94565 1.91545 1.49445 1.96857 1.72877 1.21102 0.95214 0.98195 1.01788 1.16602 0.92188 0.81887 0.99270 1.91570 1.78960 1.45064 1.94638 1.21116 1.03004 0.89363 1.02814 1.16766 0.96474 0.84721 0.95653 1.91520 1.88772 1.51712 1.78512 0.92875 0.99607 0.99680 0.86951 0.86839 0.72244 0.72372 0.80075 0.80190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.99 13.29 21.45 0.28 -58.71 16 2 C -0.01 -0.40 5.46 84.66 0.46 0.06 16 3 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.25 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 8 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 9 C 0.04 2.30 4.26 29.85 0.13 2.43 16 10 C -0.11 -4.08 5.64 29.85 0.17 -3.91 16 11 C 0.51 19.42 7.95 87.66 0.70 20.11 16 12 O -0.58 -27.86 15.83 -3.01 -0.05 -27.91 16 13 N -0.51 -14.44 5.62 -173.54 -0.98 -15.41 16 14 N -0.56 -14.86 6.22 -50.99 -0.32 -15.17 16 15 C 0.12 2.43 6.54 38.16 0.25 2.68 16 16 C 0.10 1.73 7.31 22.47 0.16 1.89 16 17 F -0.13 -2.65 16.96 44.97 0.76 -1.89 16 18 C -0.14 -1.72 10.00 22.35 0.22 -1.50 16 19 C 0.12 1.45 7.30 22.37 0.16 1.61 16 20 F -0.12 -1.53 17.26 44.97 0.78 -0.75 16 21 C -0.14 -1.73 10.00 22.35 0.22 -1.51 16 22 C 0.09 1.53 7.09 22.47 0.16 1.69 16 23 F -0.13 -2.52 15.09 44.97 0.68 -1.85 16 24 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 25 H -0.01 -0.89 8.10 -2.39 -0.02 -0.91 16 26 H -0.02 -0.94 8.10 -2.38 -0.02 -0.96 16 27 H 0.11 3.72 8.14 -2.38 -0.02 3.70 16 28 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 29 H 0.43 9.58 7.17 -213.31 -1.53 8.05 16 30 H 0.43 12.66 7.99 -213.32 -1.70 10.96 16 31 H 0.18 1.31 8.06 -2.90 -0.02 1.29 16 32 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -73.64 301.57 4.03 -69.61 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -2.03 Total: 12.67 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 2.87 Total: -6.36 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -1.01 Total: -89.29 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 2.22 Total: -4.48 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.64 4.03 -69.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885154044.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.865 kcal (2) G-P(sol) polarization free energy of solvation -73.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds