Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36037 * 122.56323 * 2 1 4 4 C 1.31635 * 114.69218 * 179.76163 * 3 2 1 5 5 S 1.75886 * 109.46301 * 0.47957 * 4 3 2 6 6 C 1.34329 * 122.56688 * 180.29145 * 2 1 3 7 7 N 1.33225 * 125.06615 * 0.02562 * 6 2 1 8 8 C 1.33453 * 119.99844 * 179.97438 * 7 6 2 9 9 O 1.21920 * 120.00348 * 0.02562 * 8 7 6 10 10 C 1.48170 * 119.99324 * 180.02562 * 8 7 6 11 11 C 1.39822 * 120.01891 * 359.72925 * 10 8 7 12 12 C 1.38352 * 120.37188 * 179.71743 * 11 10 8 13 13 C 1.37747 * 120.39523 * 0.55885 * 12 11 10 14 14 C 1.40744 * 120.01658 * 359.71645 * 13 12 11 15 15 C 1.41431 * 120.18243 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00327 * 24.43430 * 15 14 13 17 17 C 1.39932 * 120.00241 * 204.43392 * 15 14 13 18 18 N 1.30833 * 120.00263 * 17.89059 * 17 15 14 19 19 Si 1.86806 * 120.00212 * 197.89236 * 17 15 14 20 20 H 1.48499 * 109.46865 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46892 * 119.99641 * 19 17 15 22 22 H 1.48493 * 109.47060 * 239.99742 * 19 17 15 23 23 C 1.38887 * 120.01049 * 180.02562 * 10 8 7 24 24 H 1.08996 * 109.47231 * 269.70832 * 1 2 3 25 25 H 1.09004 * 109.46728 * 149.70613 * 1 2 3 26 26 H 1.08997 * 109.47376 * 29.71435 * 1 2 3 27 27 H 1.08001 * 122.65480 * 359.97438 * 3 2 1 28 28 H 1.07995 * 125.26920 * 180.24550 * 4 3 2 29 29 H 1.08004 * 119.82021 * 359.97438 * 11 10 8 30 30 H 1.08003 * 119.80658 * 180.25454 * 12 11 10 31 31 H 1.08007 * 119.98834 * 179.74337 * 13 12 11 32 32 H 0.96994 * 120.00306 * 180.02562 * 18 17 15 33 33 H 1.08000 * 120.19765 * 359.97427 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1972 1.1465 0.0000 4 6 3.5011 0.9663 0.0050 5 16 3.8546 -0.7567 -0.0038 6 6 2.1881 -1.1321 -0.0058 7 7 1.6811 -2.3641 -0.0125 8 6 2.4960 -3.4209 -0.0184 9 8 3.7044 -3.2590 -0.0170 10 6 1.9320 -4.7910 -0.0264 11 6 0.5463 -4.9771 -0.0222 12 6 0.0118 -6.2532 -0.0356 13 6 0.8384 -7.3550 -0.0416 14 6 2.2358 -7.1869 -0.0402 15 6 3.0878 -8.3157 -0.0469 16 1 2.7336 -9.2573 -0.4397 17 6 4.3898 -8.2127 0.4553 18 7 4.7127 -7.2135 1.2358 19 14 5.6670 -9.5016 0.0114 20 1 5.0540 -10.5196 -0.8791 21 1 6.8034 -8.8515 -0.6895 22 1 6.1590 -10.1578 1.2493 23 6 2.7798 -5.8912 -0.0320 24 1 -0.3633 -0.0052 1.0276 25 1 -0.3633 -0.8874 -0.5184 26 1 -0.3634 0.8925 -0.5094 27 1 1.7445 2.1271 -0.0004 28 1 4.2396 1.7543 0.0096 29 1 -0.1107 -4.1199 -0.0127 30 1 -1.0600 -6.3863 -0.0364 31 1 0.4141 -8.3482 -0.0479 32 1 5.6153 -7.1419 1.5837 33 1 3.8507 -5.7517 -0.0308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915822968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = 47.694873 kcal Electronic energy + Delta-G solvation = -19417.733998 eV Core-core repulsion = 16342.763065 eV Total energy + Delta-G solvation = -3074.970933 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.53943 -38.95020 -36.97182 -33.62654 -33.48344 -31.77635 -30.15288 -29.30708 -27.61820 -25.26031 -24.58793 -22.54745 -20.79070 -20.16978 -19.66088 -17.96069 -16.99744 -16.52273 -16.03157 -15.59068 -15.42350 -14.69712 -14.29412 -14.03730 -13.95324 -13.60983 -13.05650 -12.81924 -12.58071 -12.53060 -12.37787 -11.56142 -11.10501 -11.05650 -10.97542 -10.62398 -10.52893 -10.37865 -10.02634 -9.60649 -9.42530 -9.37925 -9.09999 -8.73008 -7.76543 -7.36989 -7.34059 -6.68289 -4.28586 0.95871 1.29812 1.77950 1.96886 2.51927 2.61254 2.92842 3.14101 3.19318 3.26275 4.00226 4.16770 4.38184 4.73684 4.79530 4.90369 5.12936 5.31813 5.40073 5.51863 5.74658 6.09905 6.29159 6.46909 6.61735 6.67650 6.93638 7.12235 7.23068 7.35745 7.50223 7.55743 7.90708 7.99943 8.09924 8.29884 8.62248 8.92232 8.95007 9.01159 10.26866 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023297 B = 0.004475 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.564565 B = 6255.388062 C = 7369.696553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.481 5.481 3 C 0.066 3.934 4 C -0.322 4.322 5 S 0.217 5.783 6 C 0.342 3.658 7 N -0.606 5.606 8 C 0.532 3.468 9 O -0.535 6.535 10 C -0.107 4.107 11 C -0.183 4.183 12 C -0.111 4.111 13 C -0.206 4.206 14 C 0.094 3.906 15 C -0.464 4.464 16 H 0.080 0.920 17 C 0.074 3.926 18 N -0.789 5.789 19 Si 0.907 3.093 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.275 1.275 23 C -0.097 4.097 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.181 0.819 28 H 0.178 0.822 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.282 0.718 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 16.984 -1.740 17.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.178 5.178 3 C -0.064 4.064 4 C -0.462 4.462 5 S 0.464 5.536 6 C -0.029 4.029 7 N -0.363 5.363 8 C 0.322 3.678 9 O -0.418 6.418 10 C -0.110 4.110 11 C -0.203 4.203 12 C -0.129 4.129 13 C -0.226 4.226 14 C 0.092 3.908 15 C -0.494 4.494 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.414 5.414 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.200 1.200 23 C -0.117 4.117 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.198 0.802 28 H 0.195 0.805 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.014 16.047 -1.593 16.405 hybrid contribution -0.149 0.492 -0.010 0.514 sum -3.163 16.539 -1.603 16.915 Atomic orbital electron populations 1.22091 0.75516 1.04898 1.03854 1.43634 1.08735 1.02610 1.62816 1.20693 0.91694 0.90858 1.03168 1.25912 0.98782 1.06034 1.15488 1.86257 1.01172 0.93107 1.73099 1.24352 0.94710 0.91524 0.92361 1.68999 1.36820 0.94306 1.36206 1.19894 0.84701 0.89130 0.74089 1.90563 1.18208 1.86001 1.46998 1.19059 0.94229 0.89687 1.08033 1.20536 0.93369 0.95886 1.10552 1.20517 0.97341 0.93043 1.02042 1.21127 0.93773 0.96580 1.11142 1.17554 0.91292 0.92625 0.89341 1.19557 0.96278 0.97223 1.36326 0.90221 1.25925 0.99403 0.96374 0.92694 1.69812 1.20833 1.28762 1.21990 0.86281 0.80335 0.80972 0.79252 1.18411 1.19665 1.20025 1.21649 0.99883 0.90559 0.99619 0.90722 0.88264 0.89979 0.80158 0.80470 0.87908 0.89002 0.88740 0.90719 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.70 59.85 0.64 1.34 16 2 N -0.48 -5.77 3.02 -127.19 -0.38 -6.16 16 3 C 0.07 0.59 10.68 -17.55 -0.19 0.40 16 4 C -0.32 -3.23 11.17 28.87 0.32 -2.91 16 5 S 0.22 3.38 19.93 -107.50 -2.14 1.24 16 6 C 0.34 5.77 7.65 -88.70 -0.68 5.09 16 7 N -0.61 -12.49 9.01 -14.45 -0.13 -12.62 16 8 C 0.53 12.99 7.68 -12.77 -0.10 12.90 16 9 O -0.53 -13.65 13.61 4.99 0.07 -13.58 16 10 C -0.11 -2.79 5.87 -104.99 -0.62 -3.41 16 11 C -0.18 -4.37 9.59 -38.95 -0.37 -4.75 16 12 C -0.11 -2.58 10.01 -39.72 -0.40 -2.97 16 13 C -0.21 -5.20 9.78 -38.81 -0.38 -5.58 16 14 C 0.09 2.62 5.57 -106.87 -0.60 2.03 16 15 C -0.46 -12.74 9.05 -37.73 -0.34 -13.08 16 16 H 0.08 2.08 7.91 -52.49 -0.41 1.66 16 17 C 0.07 1.95 5.14 -17.34 -0.09 1.86 16 18 N -0.79 -21.73 10.96 55.55 0.61 -21.12 16 19 Si 0.91 19.45 29.60 -169.99 -5.03 14.42 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 C -0.10 -2.74 8.24 -38.48 -0.32 -3.06 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.10 1.05 7.75 -51.93 -0.40 0.65 16 26 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 28 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.10 2.23 7.53 -52.48 -0.40 1.84 16 30 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 32 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 33 H 0.13 3.98 5.74 -52.49 -0.30 3.68 16 LS Contribution 304.24 15.07 4.58 4.58 Total: -1.00 -33.35 304.24 -8.72 -42.07 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.18 Total: 3.30 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -3.11 Total: -12.14 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.09 Total: -39.89 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.07 Total: -13.58 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -2.14 Total: 1.24 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.35 -8.72 -42.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915822968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.761 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds