Wall clock time and date at job start Tue Mar 31 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36037 * 122.56323 * 2 1 4 4 C 1.31635 * 114.69218 * 179.76163 * 3 2 1 5 5 S 1.75886 * 109.46301 * 0.47957 * 4 3 2 6 6 C 1.34329 * 122.56688 * 180.29145 * 2 1 3 7 7 N 1.33225 * 125.06615 * 0.02562 * 6 2 1 8 8 C 1.33453 * 119.99844 * 179.97438 * 7 6 2 9 9 O 1.21920 * 120.00348 * 0.02562 * 8 7 6 10 10 C 1.48170 * 119.99324 * 180.02562 * 8 7 6 11 11 C 1.39822 * 120.01891 * 359.72925 * 10 8 7 12 12 C 1.38352 * 120.37188 * 179.71743 * 11 10 8 13 13 C 1.37747 * 120.39523 * 0.55885 * 12 11 10 14 14 C 1.40744 * 120.01658 * 359.71645 * 13 12 11 15 15 C 1.41431 * 120.18243 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00327 * 24.43430 * 15 14 13 17 17 C 1.39932 * 120.00241 * 204.43392 * 15 14 13 18 18 N 1.30833 * 120.00263 * 17.89059 * 17 15 14 19 19 Si 1.86806 * 120.00212 * 197.89236 * 17 15 14 20 20 H 1.48499 * 109.46865 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46892 * 119.99641 * 19 17 15 22 22 H 1.48493 * 109.47060 * 239.99742 * 19 17 15 23 23 C 1.38887 * 120.01049 * 180.02562 * 10 8 7 24 24 H 1.08996 * 109.47231 * 269.70832 * 1 2 3 25 25 H 1.09004 * 109.46728 * 149.70613 * 1 2 3 26 26 H 1.08997 * 109.47376 * 29.71435 * 1 2 3 27 27 H 1.08001 * 122.65480 * 359.97438 * 3 2 1 28 28 H 1.07995 * 125.26920 * 180.24550 * 4 3 2 29 29 H 1.08004 * 119.82021 * 359.97438 * 11 10 8 30 30 H 1.08003 * 119.80658 * 180.25454 * 12 11 10 31 31 H 1.08007 * 119.98834 * 179.74337 * 13 12 11 32 32 H 0.96994 * 120.00306 * 180.02562 * 18 17 15 33 33 H 1.08000 * 120.19765 * 359.97427 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1972 1.1465 0.0000 4 6 3.5011 0.9663 0.0050 5 16 3.8546 -0.7567 -0.0038 6 6 2.1881 -1.1321 -0.0058 7 7 1.6811 -2.3641 -0.0125 8 6 2.4960 -3.4209 -0.0184 9 8 3.7044 -3.2590 -0.0170 10 6 1.9320 -4.7910 -0.0264 11 6 0.5463 -4.9771 -0.0222 12 6 0.0118 -6.2532 -0.0356 13 6 0.8384 -7.3550 -0.0416 14 6 2.2358 -7.1869 -0.0402 15 6 3.0878 -8.3157 -0.0469 16 1 2.7336 -9.2573 -0.4397 17 6 4.3898 -8.2127 0.4553 18 7 4.7127 -7.2135 1.2358 19 14 5.6670 -9.5016 0.0114 20 1 5.0540 -10.5196 -0.8791 21 1 6.8034 -8.8515 -0.6895 22 1 6.1590 -10.1578 1.2493 23 6 2.7798 -5.8912 -0.0320 24 1 -0.3633 -0.0052 1.0276 25 1 -0.3633 -0.8874 -0.5184 26 1 -0.3634 0.8925 -0.5094 27 1 1.7445 2.1271 -0.0004 28 1 4.2396 1.7543 0.0096 29 1 -0.1107 -4.1199 -0.0127 30 1 -1.0600 -6.3863 -0.0364 31 1 0.4141 -8.3482 -0.0479 32 1 5.6153 -7.1419 1.5837 33 1 3.8507 -5.7517 -0.0308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915822968.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:41 Heat of formation + Delta-G solvation = 26.032756 kcal Electronic energy + Delta-G solvation = -19418.673338 eV Core-core repulsion = 16342.763065 eV Total energy + Delta-G solvation = -3075.910273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64186 -40.56828 -38.85779 -35.56734 -34.89715 -32.73481 -32.01937 -31.26155 -28.72110 -27.18084 -25.80865 -24.07873 -22.74878 -21.28225 -21.20011 -19.59559 -18.52899 -17.82817 -17.30749 -17.12028 -16.91597 -16.48268 -16.06575 -15.46712 -14.99544 -14.98083 -14.77381 -14.42492 -14.24177 -13.53826 -13.38415 -13.26862 -12.94299 -12.77939 -12.51986 -12.32816 -12.14586 -11.77502 -11.72539 -11.49449 -11.08522 -11.02284 -10.53020 -10.32536 -9.54708 -9.36669 -8.78198 -8.62955 -6.35701 -0.47303 0.06380 0.66624 0.99923 1.01415 1.07992 1.36158 1.48753 1.49263 1.53468 2.19967 2.39938 2.87829 3.14025 3.74059 3.97330 4.13936 4.44581 4.47682 4.52824 4.64524 4.67866 4.77146 4.84577 5.01237 5.12312 5.25464 5.35483 5.45145 5.54672 5.65085 5.95353 5.99105 6.06172 6.14612 6.31079 6.61463 6.89868 6.97086 7.35731 8.33595 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.023297 B = 0.004475 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.564565 B = 6255.388062 C = 7369.696553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.465 5.465 3 C 0.079 3.921 4 C -0.306 4.306 5 S 0.157 5.843 6 C 0.326 3.674 7 N -0.630 5.630 8 C 0.520 3.480 9 O -0.574 6.574 10 C -0.120 4.120 11 C -0.176 4.176 12 C -0.104 4.104 13 C -0.214 4.214 14 C 0.065 3.935 15 C -0.499 4.499 16 H 0.085 0.915 17 C 0.028 3.972 18 N -0.830 5.830 19 Si 0.985 3.015 20 H -0.250 1.250 21 H -0.270 1.270 22 H -0.263 1.263 23 C -0.135 4.135 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.132 0.868 27 H 0.246 0.754 28 H 0.217 0.783 29 H 0.127 0.873 30 H 0.137 0.863 31 H 0.111 0.889 32 H 0.286 0.714 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.857 20.005 -2.021 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.159 5.159 3 C -0.049 4.049 4 C -0.445 4.445 5 S 0.406 5.594 6 C -0.043 4.043 7 N -0.391 5.391 8 C 0.309 3.691 9 O -0.460 6.460 10 C -0.123 4.123 11 C -0.196 4.196 12 C -0.122 4.122 13 C -0.234 4.234 14 C 0.063 3.937 15 C -0.529 4.529 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.456 5.456 19 Si 0.805 3.195 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.187 1.187 23 C -0.155 4.155 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.150 0.850 27 H 0.262 0.738 28 H 0.234 0.766 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.777 19.168 -1.873 19.843 hybrid contribution 0.261 0.006 0.085 0.274 sum -4.516 19.174 -1.788 19.779 Atomic orbital electron populations 1.22444 0.73192 1.06408 1.05119 1.44182 1.10334 1.01889 1.59514 1.21710 0.91160 0.91696 1.00356 1.26198 1.00305 1.02295 1.15660 1.86478 1.01788 0.98941 1.72234 1.24502 0.95475 0.91961 0.92408 1.68823 1.35947 0.94795 1.39488 1.19801 0.84737 0.89779 0.74820 1.90548 1.19272 1.86831 1.49301 1.19467 0.95275 0.90615 1.06980 1.20856 0.92648 0.97147 1.08927 1.20956 0.99387 0.91962 0.99927 1.21418 0.93003 0.98237 1.10723 1.17932 0.92938 0.92732 0.90120 1.19861 0.97718 0.97479 1.37832 0.89726 1.26897 1.01233 0.98608 0.91837 1.69922 1.21472 1.30954 1.23226 0.85123 0.77012 0.77993 0.79338 1.17353 1.19505 1.18720 1.21445 0.98758 0.91946 1.03387 0.89499 0.90362 0.84967 0.73803 0.76614 0.85550 0.84569 0.87053 0.90385 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 10.70 127.77 1.37 2.32 16 2 N -0.46 -9.57 3.02 -556.31 -1.68 -11.25 16 3 C 0.08 0.96 10.68 83.41 0.89 1.85 16 4 C -0.31 -4.90 11.17 67.19 0.75 -4.15 16 5 S 0.16 4.95 19.93 -56.49 -1.13 3.82 16 6 C 0.33 10.87 7.65 179.68 1.38 12.25 16 7 N -0.63 -26.62 9.01 -318.50 -2.87 -29.49 16 8 C 0.52 27.01 7.68 87.09 0.67 27.68 16 9 O -0.57 -31.76 13.61 -5.05 -0.07 -31.82 16 10 C -0.12 -6.63 5.87 -20.10 -0.12 -6.75 16 11 C -0.18 -8.46 9.59 22.68 0.22 -8.24 16 12 C -0.10 -4.76 10.01 22.18 0.22 -4.53 16 13 C -0.21 -10.95 9.78 22.77 0.22 -10.73 16 14 C 0.06 3.81 5.57 -21.32 -0.12 3.69 16 15 C -0.50 -28.78 9.05 23.47 0.21 -28.57 16 16 H 0.08 4.58 7.91 -2.91 -0.02 4.56 16 17 C 0.03 1.56 5.14 85.25 0.44 2.00 16 18 N -0.83 -48.76 10.96 21.82 0.24 -48.52 16 19 Si 0.99 41.44 29.60 68.60 2.03 43.47 16 20 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 23 C -0.13 -8.19 8.24 22.98 0.19 -8.00 16 24 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 1.48 7.75 -2.39 -0.02 1.46 16 26 H 0.13 0.52 8.09 -2.39 -0.02 0.50 16 27 H 0.25 -0.01 8.06 -2.91 -0.02 -0.03 16 28 H 0.22 1.82 8.06 -2.91 -0.02 1.79 16 29 H 0.13 5.39 7.53 -2.91 -0.02 5.37 16 30 H 0.14 4.95 8.06 -2.91 -0.02 4.92 16 31 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 32 H 0.29 15.36 8.30 -92.71 -0.77 14.59 16 33 H 0.10 6.61 5.74 -2.91 -0.02 6.60 16 Total: -1.00 -82.50 304.24 3.98 -78.52 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.14 Total: 16.46 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 6.32 Total: -21.18 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -4.31 Total: -89.26 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.07 Total: -31.82 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.13 Total: 3.82 kcal Total: -82.50 3.98 -78.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915822968.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.548 kcal (2) G-P(sol) polarization free energy of solvation -82.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds