Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47286 * 239.99987 * 3 2 1 5 5 H 1.48500 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46618 * 120.00321 * 3 2 1 7 7 C 1.37881 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47285 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.34707 * 116.99953 * 180.02562 * 11 10 9 13 13 O 1.21467 * 120.00059 * 359.97438 * 12 11 10 14 14 C 1.47731 * 120.00039 * 180.02562 * 12 11 10 15 15 C 1.39655 * 120.14610 * 0.19854 * 14 12 11 16 16 C 1.37916 * 119.84597 * 180.25977 * 15 14 12 17 17 C 1.38391 * 120.15142 * 359.51461 * 16 15 14 18 18 C 1.38345 * 120.30260 * 0.27963 * 17 16 15 19 19 C 1.50699 * 119.93023 * 179.97438 * 18 17 16 20 20 F 1.39911 * 109.46670 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.47227 * 119.99939 * 19 18 17 22 22 F 1.39897 * 109.47602 * 240.00627 * 19 18 17 23 23 C 1.37971 * 120.14907 * 359.95556 * 18 17 16 24 24 H 0.97003 * 119.99945 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47792 * 59.99834 * 9 7 2 26 26 H 1.09007 * 109.47099 * 299.99930 * 9 7 2 27 27 H 1.09003 * 109.47525 * 59.99404 * 10 9 7 28 28 H 1.09007 * 109.47200 * 299.99551 * 10 9 7 29 29 H 1.07998 * 120.07576 * 0.03338 * 15 14 12 30 30 H 1.08002 * 119.92771 * 179.79894 * 16 15 14 31 31 H 1.07997 * 119.85156 * 180.25884 * 17 16 15 32 32 H 1.08003 * 120.07511 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5192 -4.9196 -0.0020 12 6 2.2529 -6.0493 -0.0013 13 8 3.4659 -5.9857 -0.0008 14 6 1.5823 -7.3656 -0.0023 15 6 0.1878 -7.4423 -0.0082 16 6 -0.4318 -8.6744 -0.0037 17 6 0.3249 -9.8331 -0.0035 18 6 1.7067 -9.7644 -0.0021 19 6 2.5225 -11.0314 -0.0013 20 9 1.6658 -12.1376 -0.0029 21 9 3.3307 -11.0664 -1.1427 22 9 3.3282 -11.0668 1.1418 23 6 2.3395 -8.5384 -0.0016 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 2.8713 -3.6047 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 -0.4039 -6.5389 -0.0125 30 1 -1.5101 -8.7353 -0.0049 31 1 -0.1653 -10.7954 -0.0042 32 1 3.4183 -8.4861 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916618092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -223.075560 kcal Electronic energy + Delta-G solvation = -21584.851921 eV Core-core repulsion = 17481.237138 eV Total energy + Delta-G solvation = -4103.614783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.44960 -47.98085 -47.88744 -40.46730 -39.02101 -36.20605 -33.44023 -32.59147 -31.70485 -30.25412 -26.39795 -25.60497 -24.12931 -22.51584 -21.29174 -20.69202 -18.92623 -18.76103 -18.63077 -17.17131 -16.67990 -16.19904 -16.08148 -16.05682 -15.19011 -14.81067 -14.59902 -14.57680 -14.36432 -14.34364 -14.05798 -14.03458 -13.67763 -13.18966 -12.92109 -12.83444 -12.39644 -12.11343 -11.62811 -11.31758 -11.12060 -10.80001 -10.78038 -10.42564 -9.76268 -9.70734 -9.65341 -9.48617 -9.37305 -8.48474 -6.14886 -4.19512 0.30270 0.65703 2.30104 2.43023 2.91874 3.27624 3.31792 3.34304 3.34907 3.39905 3.73377 4.11989 4.33934 4.41975 4.49846 4.73469 4.78700 4.95870 5.21925 5.25984 5.39528 5.66660 5.86358 5.89511 6.00101 6.01385 6.25682 6.55483 6.80699 7.48334 7.55344 7.80235 8.03056 8.18406 8.85640 9.45215 10.96546 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.041248 B = 0.002798 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.663640 B =10005.109989 C =10498.677073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.350 6.350 12 C 0.501 3.499 13 O -0.508 6.508 14 C -0.116 4.116 15 C -0.029 4.029 16 C -0.131 4.131 17 C -0.046 4.046 18 C -0.200 4.200 19 C 0.513 3.487 20 F -0.177 7.177 21 F -0.175 7.175 22 F -0.174 7.174 23 C -0.010 4.010 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.154 0.846 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -22.660 -0.015 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.003 3.997 11 O -0.266 6.266 12 C 0.345 3.655 13 O -0.399 6.399 14 C -0.118 4.118 15 C -0.047 4.047 16 C -0.149 4.149 17 C -0.064 4.064 18 C -0.201 4.201 19 C 0.458 3.542 20 F -0.158 7.158 21 F -0.156 7.156 22 F -0.156 7.156 23 C -0.028 4.028 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.172 0.828 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.710 -22.489 -0.016 22.500 hybrid contribution 0.741 0.759 0.000 1.061 sum 0.031 -21.730 -0.016 21.730 Atomic orbital electron populations 1.69956 1.06102 1.27177 1.49598 1.24976 0.94926 0.99401 0.94769 0.86521 0.79490 0.82403 0.78829 1.20031 1.21098 1.20036 1.20931 0.93183 0.90065 1.52483 0.92254 1.19175 0.94166 0.88915 0.98929 1.23742 0.96493 0.78193 1.01243 1.86556 1.41948 1.15595 1.82521 1.20901 0.85664 0.85439 0.73524 1.90820 1.14928 1.88282 1.45846 1.19222 0.93994 0.90864 1.07686 1.21911 0.93410 0.99528 0.89821 1.21226 1.01025 0.91232 1.01447 1.21274 0.91689 1.00374 0.93033 1.19830 0.94936 0.92163 1.13169 1.18165 0.78108 0.83898 0.73995 1.93166 1.70178 1.56239 1.96261 1.93237 1.74588 1.96751 1.51008 1.93237 1.74718 1.96750 1.50870 1.20961 1.01358 0.89530 0.90993 0.92604 0.95280 0.95282 0.92033 0.92031 0.82818 0.83708 0.83875 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.64 5.35 -27.89 -0.15 0.49 16 10 C 0.08 1.62 5.41 37.16 0.20 1.83 16 11 O -0.35 -6.64 9.47 -40.51 -0.38 -7.02 16 12 C 0.50 8.59 7.90 34.61 0.27 8.87 16 13 O -0.51 -9.90 16.14 -19.24 -0.31 -10.21 16 14 C -0.12 -1.53 5.87 -104.98 -0.62 -2.15 16 15 C -0.03 -0.30 9.62 -39.17 -0.38 -0.68 16 16 C -0.13 -1.04 10.03 -39.64 -0.40 -1.44 16 17 C -0.05 -0.37 9.43 -39.49 -0.37 -0.74 16 18 C -0.20 -1.99 5.37 -104.68 -0.56 -2.55 16 19 C 0.51 5.04 3.31 36.00 0.12 5.16 16 20 F -0.18 -1.60 15.96 2.25 0.04 -1.57 16 21 F -0.17 -1.86 17.23 2.25 0.04 -1.82 16 22 F -0.17 -1.86 17.23 2.25 0.04 -1.82 16 23 C -0.01 -0.12 9.14 -39.17 -0.36 -0.48 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.15 1.58 7.61 -52.49 -0.40 1.18 16 30 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.14 0.82 7.14 -52.49 -0.37 0.44 16 32 H 0.15 1.77 7.65 -52.48 -0.40 1.36 16 LS Contribution 305.26 15.07 4.60 4.60 Total: -1.00 -30.36 305.26 -5.74 -36.10 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -2.83 Total: -4.23 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.65 Total: -4.97 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.74 Total: -25.13 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.69 Total: -17.23 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.11 Total: -5.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.36 -5.74 -36.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916618092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.976 kcal (2) G-P(sol) polarization free energy of solvation -30.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds