Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47286 * 239.99987 * 3 2 1 5 5 H 1.48500 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46618 * 120.00321 * 3 2 1 7 7 C 1.37881 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47285 * 180.02562 * 9 7 2 11 11 O 1.45205 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.34707 * 116.99953 * 180.02562 * 11 10 9 13 13 O 1.21467 * 120.00059 * 359.97438 * 12 11 10 14 14 C 1.47731 * 120.00039 * 180.02562 * 12 11 10 15 15 C 1.39655 * 120.14610 * 0.19854 * 14 12 11 16 16 C 1.37916 * 119.84597 * 180.25977 * 15 14 12 17 17 C 1.38391 * 120.15142 * 359.51461 * 16 15 14 18 18 C 1.38345 * 120.30260 * 0.27963 * 17 16 15 19 19 C 1.50699 * 119.93023 * 179.97438 * 18 17 16 20 20 F 1.39911 * 109.46670 * 0.02562 * 19 18 17 21 21 F 1.39895 * 109.47227 * 119.99939 * 19 18 17 22 22 F 1.39897 * 109.47602 * 240.00627 * 19 18 17 23 23 C 1.37971 * 120.14907 * 359.95556 * 18 17 16 24 24 H 0.97003 * 119.99945 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47792 * 59.99834 * 9 7 2 26 26 H 1.09007 * 109.47099 * 299.99930 * 9 7 2 27 27 H 1.09003 * 109.47525 * 59.99404 * 10 9 7 28 28 H 1.09007 * 109.47200 * 299.99551 * 10 9 7 29 29 H 1.07998 * 120.07576 * 0.03338 * 15 14 12 30 30 H 1.08002 * 119.92771 * 179.79894 * 16 15 14 31 31 H 1.07997 * 119.85156 * 180.25884 * 17 16 15 32 32 H 1.08003 * 120.07511 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 8 1.5192 -4.9196 -0.0020 12 6 2.2529 -6.0493 -0.0013 13 8 3.4659 -5.9857 -0.0008 14 6 1.5823 -7.3656 -0.0023 15 6 0.1878 -7.4423 -0.0082 16 6 -0.4318 -8.6744 -0.0037 17 6 0.3249 -9.8331 -0.0035 18 6 1.7067 -9.7644 -0.0021 19 6 2.5225 -11.0314 -0.0013 20 9 1.6658 -12.1376 -0.0029 21 9 3.3307 -11.0664 -1.1427 22 9 3.3282 -11.0668 1.1418 23 6 2.3395 -8.5384 -0.0016 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 2.8713 -3.6047 0.8890 28 1 2.8725 -3.6040 -0.8910 29 1 -0.4039 -6.5389 -0.0125 30 1 -1.5101 -8.7353 -0.0049 31 1 -0.1653 -10.7954 -0.0042 32 1 3.4183 -8.4861 -0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916618092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -238.727218 kcal Electronic energy + Delta-G solvation = -21585.530627 eV Core-core repulsion = 17481.237138 eV Total energy + Delta-G solvation = -4104.293489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.23839 -48.74601 -48.70616 -41.72539 -40.06359 -37.74106 -35.47055 -33.52863 -32.62727 -32.10558 -27.48408 -27.05623 -25.49746 -23.31631 -23.02193 -22.03166 -19.96703 -19.55770 -19.42426 -18.73965 -17.99243 -17.60250 -17.58359 -17.20504 -16.49730 -16.10645 -15.62247 -15.39196 -15.22520 -15.14770 -15.13129 -14.86725 -14.85418 -14.57317 -14.37052 -13.96529 -13.75244 -13.16230 -13.12452 -12.94130 -12.62094 -12.60264 -12.38238 -11.96394 -11.57913 -11.52798 -11.42200 -10.61157 -10.49555 -10.30954 -8.27522 -6.40438 -0.59463 -0.16170 1.30076 1.38182 1.44051 1.44592 1.52930 1.67800 2.39529 2.39552 2.60400 2.94155 3.07181 3.32582 3.45730 3.66273 3.87627 3.94152 4.15137 4.19966 4.20783 4.39119 4.63107 4.67320 4.88095 5.07558 5.09595 5.22016 5.45927 5.46196 5.51989 5.72243 6.05883 6.57070 6.72763 7.29257 8.84735 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.041248 B = 0.002798 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.663640 B =10005.109989 C =10498.677073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.090 3.910 11 O -0.353 6.353 12 C 0.500 3.500 13 O -0.539 6.539 14 C -0.140 4.140 15 C -0.031 4.031 16 C -0.115 4.115 17 C -0.028 4.028 18 C -0.203 4.203 19 C 0.517 3.483 20 F -0.168 7.168 21 F -0.181 7.181 22 F -0.181 7.181 23 C -0.017 4.017 24 H 0.268 0.732 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.154 0.846 30 H 0.185 0.815 31 H 0.177 0.823 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 -23.856 -0.018 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.005 4.005 10 C 0.017 3.983 11 O -0.269 6.269 12 C 0.347 3.653 13 O -0.431 6.431 14 C -0.141 4.141 15 C -0.049 4.049 16 C -0.132 4.132 17 C -0.046 4.046 18 C -0.204 4.204 19 C 0.463 3.537 20 F -0.150 7.150 21 F -0.162 7.162 22 F -0.162 7.162 23 C -0.035 4.035 24 H 0.077 0.923 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.172 0.828 30 H 0.202 0.798 31 H 0.194 0.806 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.482 -23.711 -0.018 23.757 hybrid contribution 0.910 0.975 0.001 1.334 sum -0.572 -22.736 -0.017 22.743 Atomic orbital electron populations 1.70072 1.07716 1.28366 1.50242 1.25920 0.95836 1.03266 0.94049 0.85409 0.78236 0.77601 0.79269 1.19135 1.20429 1.19145 1.21346 0.93712 0.91297 1.52711 0.91785 1.18973 0.94279 0.90255 0.96968 1.23253 0.95224 0.78605 1.01187 1.86532 1.41866 1.15467 1.83078 1.21624 0.85519 0.85992 0.72193 1.90794 1.16216 1.88592 1.47491 1.19013 0.95159 0.88700 1.11243 1.22036 0.92146 1.01068 0.89623 1.21618 1.02840 0.89647 0.99121 1.21720 0.90680 1.01961 0.90211 1.19891 0.95956 0.91251 1.13311 1.18100 0.77980 0.84076 0.73585 1.93182 1.69797 1.55788 1.96201 1.93227 1.74851 1.96795 1.51350 1.93228 1.74979 1.96794 1.51212 1.20884 1.00994 0.90007 0.91639 0.92284 0.97186 0.97195 0.92066 0.92057 0.82826 0.79812 0.80588 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.42 13.29 21.45 0.28 -54.14 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.55 -30.95 9.11 25.60 0.23 -30.71 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.41 16 9 C 0.03 1.70 5.35 29.84 0.16 1.86 16 10 C 0.09 4.00 5.41 71.98 0.39 4.39 16 11 O -0.35 -13.78 9.47 -56.17 -0.53 -14.31 16 12 C 0.50 17.65 7.90 70.33 0.56 18.20 16 13 O -0.54 -21.73 16.14 19.94 0.32 -21.41 16 14 C -0.14 -3.66 5.87 -20.10 -0.12 -3.78 16 15 C -0.03 -0.60 9.62 22.54 0.22 -0.38 16 16 C -0.11 -1.39 10.03 22.23 0.22 -1.17 16 17 C -0.03 -0.34 9.43 22.33 0.21 -0.13 16 18 C -0.20 -3.64 5.37 -19.90 -0.11 -3.75 16 19 C 0.52 9.27 3.31 71.24 0.24 9.50 16 20 F -0.17 -2.57 15.96 44.97 0.72 -1.86 16 21 F -0.18 -3.66 17.23 44.97 0.77 -2.89 16 22 F -0.18 -3.66 17.23 44.97 0.78 -2.88 16 23 C -0.02 -0.39 9.14 22.54 0.21 -0.19 16 24 H 0.27 14.76 8.31 -92.71 -0.77 13.98 16 25 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 29 H 0.15 2.99 7.61 -2.91 -0.02 2.97 16 30 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 31 H 0.18 1.07 7.14 -2.91 -0.02 1.05 16 32 H 0.14 3.41 7.65 -2.91 -0.02 3.38 16 Total: -1.00 -66.46 305.26 8.20 -58.26 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: 1.16 Total: -0.68 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 2.67 Total: -5.22 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.28 Total: -54.14 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.21 Total: -35.72 kcal Atomic # 9 Polarization: -9.89 SS G_CDS: 2.27 Total: -7.62 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -66.46 8.20 -58.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916618092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.467 kcal (2) G-P(sol) polarization free energy of solvation -66.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds