Wall clock time and date at job start Tue Mar 31 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48498 * 109.47353 * 270.00072 * 3 2 1 5 5 H 1.48496 * 109.47174 * 30.00588 * 3 2 1 6 6 H 1.48497 * 109.47141 * 150.00284 * 3 2 1 7 7 C 1.37878 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99892 * 179.97438 * 7 2 1 10 10 O 1.42904 * 109.46927 * 179.97438 * 9 7 2 11 11 C 1.42896 * 113.99825 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46929 * 180.02562 * 11 10 9 13 13 S 1.81402 * 109.47218 * 180.02562 * 12 11 10 14 14 C 1.81403 * 103.00234 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47128 * 179.97438 * 14 13 12 16 16 C 1.38257 * 119.99723 * 270.24834 * 15 14 13 17 17 C 1.38213 * 120.06756 * 180.25475 * 16 15 14 18 18 C 1.38253 * 120.07443 * 359.75015 * 17 16 15 19 19 C 1.38368 * 120.00006 * 359.97438 * 18 17 16 20 20 F 1.35102 * 120.04054 * 179.97438 * 19 18 17 21 21 C 1.38372 * 120.00361 * 89.99906 * 15 14 13 22 22 F 1.35104 * 120.03221 * 0.02562 * 21 15 14 23 23 H 0.96996 * 120.00598 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47307 * 59.99716 * 9 7 2 25 25 H 1.09000 * 109.47409 * 299.99278 * 9 7 2 26 26 H 1.08996 * 109.47627 * 60.00507 * 11 10 9 27 27 H 1.09004 * 109.47408 * 299.99744 * 11 10 9 28 28 H 1.09000 * 109.47525 * 60.00199 * 12 11 10 29 29 H 1.08997 * 109.47113 * 299.99448 * 12 11 10 30 30 H 1.08989 * 109.46885 * 59.99474 * 14 13 12 31 31 H 1.09004 * 109.46310 * 299.99801 * 14 13 12 32 32 H 1.07999 * 119.96593 * 359.97438 * 16 15 14 33 33 H 1.08003 * 119.96798 * 179.76678 * 17 16 15 34 34 H 1.08001 * 120.00866 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 8 3.9879 -2.5412 -0.0010 11 6 5.4124 -2.6539 -0.0021 12 6 5.8070 -4.1322 -0.0025 13 16 7.6154 -4.2754 -0.0032 14 6 7.8827 -6.0696 -0.0044 15 6 9.3620 -6.3571 -0.0057 16 6 10.0406 -6.4832 -1.2036 17 6 11.3963 -6.7520 -1.2065 18 6 12.0778 -6.8903 -0.0115 19 6 11.4026 -6.7591 1.1891 20 9 12.0676 -6.8946 2.3573 21 6 10.0421 -6.4897 1.1920 22 9 9.3805 -6.3622 2.3631 23 1 -0.4851 0.8400 0.0004 24 1 3.8752 -0.6802 0.8888 25 1 3.8745 -0.6800 -0.8912 26 1 5.8160 -2.1702 0.8874 27 1 5.8145 -2.1707 -0.8926 28 1 5.4036 -4.6158 -0.8922 29 1 5.4050 -4.6158 0.8878 30 1 7.4277 -6.5041 -0.8944 31 1 7.4283 -6.5052 0.8856 32 1 9.5099 -6.3760 -2.1381 33 1 11.9241 -6.8539 -2.1433 34 1 13.1372 -7.1000 -0.0150 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918867269.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:33 Heat of formation + Delta-G solvation = -136.794889 kcal Electronic energy + Delta-G solvation = -18946.464018 eV Core-core repulsion = 15412.803822 eV Total energy + Delta-G solvation = -3533.660196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.55586 -49.64550 -40.03507 -38.84941 -34.98597 -33.96162 -32.64810 -31.33528 -29.81571 -28.45145 -24.36106 -23.94156 -23.86232 -22.95209 -19.13803 -18.97877 -18.35276 -18.05069 -17.72593 -17.53977 -17.12605 -16.84060 -16.49237 -16.06850 -15.79657 -15.59469 -15.12707 -15.07456 -15.02543 -14.50654 -14.45062 -14.15470 -13.65397 -13.12697 -13.09351 -12.89177 -12.85051 -12.60112 -12.44327 -12.21538 -11.85941 -11.46982 -11.19064 -10.96270 -10.48634 -9.92976 -9.79202 -8.79873 -8.40153 -6.49006 -0.37580 -0.10183 0.64267 1.32796 1.35642 1.42354 1.46596 2.27456 2.42041 2.70980 2.92251 3.08462 3.19448 3.39444 3.64263 3.83695 3.85601 3.98777 4.07233 4.20529 4.32062 4.39244 4.49408 4.62902 4.70447 4.76129 4.82433 4.93918 4.96473 5.12949 5.23786 5.37958 5.71721 5.86211 6.53719 6.63081 7.15159 8.76718 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.038727 B = 0.002468 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.836713 B =11342.436245 C =11447.707450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.549 4.549 8 H 0.032 0.968 9 C 0.179 3.821 10 O -0.403 6.403 11 C 0.070 3.930 12 C -0.078 4.078 13 S -0.253 6.253 14 C -0.042 4.042 15 C -0.091 4.091 16 C -0.077 4.077 17 C -0.086 4.086 18 C -0.113 4.113 19 C 0.042 3.958 20 F -0.142 7.142 21 C 0.055 3.945 22 F -0.141 7.141 23 H 0.274 0.726 24 H 0.013 0.987 25 H 0.016 0.984 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.169 0.831 33 H 0.183 0.817 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.779 -15.151 -4.209 32.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.587 4.587 8 H 0.050 0.950 9 C 0.104 3.896 10 O -0.323 6.323 11 C -0.007 4.007 12 C -0.226 4.226 13 S -0.025 6.025 14 C -0.189 4.189 15 C -0.093 4.093 16 C -0.097 4.097 17 C -0.104 4.104 18 C -0.133 4.133 19 C 0.022 3.978 20 F -0.121 7.121 21 C 0.033 3.967 22 F -0.120 7.120 23 H 0.083 0.917 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.110 0.890 32 H 0.186 0.814 33 H 0.200 0.800 34 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 29.173 -14.372 -4.103 32.779 hybrid contribution -1.234 -0.109 0.996 1.590 sum 27.939 -14.481 -3.107 31.622 Atomic orbital electron populations 1.70017 1.08214 1.28910 1.50731 1.25834 0.95831 1.03408 0.93333 0.85613 0.79381 0.77466 0.79951 1.18100 1.19723 1.17068 1.21132 0.90736 0.94008 1.52805 0.94958 1.20375 0.93429 0.80427 0.95414 1.87839 1.20202 1.28931 1.95353 1.22108 0.82306 0.95176 1.01158 1.23136 0.93727 0.99201 1.06569 1.86978 1.07021 1.10223 1.98244 1.22251 0.95060 0.93640 1.07995 1.19282 0.94633 1.03185 0.92228 1.21475 0.95134 0.95877 0.97167 1.21563 0.93533 0.96259 0.99018 1.21553 1.02640 0.99611 0.89456 1.18017 0.88723 1.07578 0.83466 1.91500 1.80190 1.93719 1.46700 1.17902 0.89783 1.06842 0.82188 1.91493 1.80757 1.93606 1.46147 0.91665 0.96913 0.96619 0.93029 0.92179 0.88248 0.89468 0.85395 0.88993 0.81376 0.79972 0.80936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 2 C 0.01 0.85 5.47 84.66 0.46 1.31 16 3 Si 0.95 43.34 27.47 68.60 1.88 45.23 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 7 C -0.55 -33.61 9.99 25.60 0.26 -33.35 16 8 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 9 C 0.18 9.09 4.76 71.23 0.34 9.42 16 10 O -0.40 -18.86 10.33 -148.98 -1.54 -20.40 16 11 C 0.07 2.45 5.95 71.98 0.43 2.88 16 12 C -0.08 -2.19 6.31 71.98 0.45 -1.73 16 13 S -0.25 -6.10 21.72 -56.49 -1.23 -7.33 16 14 C -0.04 -0.74 5.89 71.23 0.42 -0.32 16 15 C -0.09 -1.49 5.14 -19.83 -0.10 -1.59 16 16 C -0.08 -0.75 9.70 22.27 0.22 -0.53 16 17 C -0.09 -0.55 10.04 22.27 0.22 -0.33 16 18 C -0.11 -1.12 10.02 22.30 0.22 -0.90 16 19 C 0.04 0.75 7.31 22.41 0.16 0.92 16 20 F -0.14 -3.04 17.18 44.97 0.77 -2.26 16 21 C 0.05 1.13 7.25 22.41 0.16 1.29 16 22 F -0.14 -3.65 16.39 44.97 0.74 -2.91 16 23 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 24 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 25 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.13 1.58 8.09 -2.40 -0.02 1.56 16 31 H 0.09 1.73 7.64 -2.39 -0.02 1.71 16 32 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 33 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 34 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -73.99 319.23 5.22 -68.77 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: 1.05 Total: 0.62 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 3.25 Total: -22.93 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.30 Total: -58.79 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -1.54 Total: -20.40 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 1.51 Total: -5.17 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.23 kcal Atomic # 16 Polarization: -6.10 SS G_CDS: -1.23 Total: -7.33 kcal Total: -73.99 5.22 -68.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918867269.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.029 kcal (2) G-P(sol) polarization free energy of solvation -73.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds