Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00087 * 2 1 4 4 H 1.48497 * 109.47276 * 270.00446 * 3 2 1 5 5 H 1.48505 * 109.46951 * 30.00504 * 3 2 1 6 6 H 1.48495 * 109.47066 * 150.00059 * 3 2 1 7 7 C 1.37877 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47026 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.46836 * 179.97438 * 10 9 7 12 12 C 1.34232 * 116.99791 * 179.97438 * 11 10 9 13 13 O 1.20818 * 120.00240 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99946 * 180.02562 * 12 11 10 15 15 F 1.39899 * 109.47182 * 85.00023 * 14 12 11 16 16 F 1.39898 * 109.46924 * 324.99875 * 14 12 11 17 17 C 1.50699 * 109.46844 * 205.00316 * 14 12 11 18 18 C 1.38250 * 119.97575 * 90.32534 * 17 14 12 19 19 C 1.38194 * 120.02377 * 180.27953 * 18 17 14 20 20 C 1.38460 * 119.97497 * 359.41202 * 19 18 17 21 21 F 1.35105 * 120.02800 * 180.30394 * 20 19 18 22 22 C 1.38467 * 119.94896 * 0.28520 * 20 19 18 23 23 C 1.38197 * 119.97188 * 359.97438 * 22 20 19 24 24 H 0.97003 * 120.00062 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47021 * 60.00119 * 9 7 2 26 26 H 1.09002 * 109.47093 * 299.99940 * 9 7 2 27 27 H 1.09000 * 109.47121 * 59.99651 * 10 9 7 28 28 H 1.09002 * 109.46985 * 299.99822 * 10 9 7 29 29 H 1.07998 * 119.98560 * 359.97438 * 18 17 14 30 30 H 1.08002 * 120.01531 * 179.69754 * 19 18 17 31 31 H 1.07998 * 120.01314 * 180.02562 * 22 20 19 32 32 H 1.07994 * 119.98607 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9195 0.0001 12 6 2.2504 -6.0453 -0.0004 13 8 3.4569 -5.9821 -0.0008 14 6 1.5662 -7.3880 -0.0004 15 9 1.2516 -7.7511 -1.3143 16 9 0.3921 -7.3131 0.7566 17 6 2.4857 -8.4203 0.5997 18 6 2.4519 -8.6686 1.9593 19 6 3.2987 -9.6108 2.5114 20 6 4.1727 -10.3149 1.7007 21 9 4.9968 -11.2407 2.2385 22 6 4.2014 -10.0699 0.3381 23 6 3.3574 -9.1233 -0.2110 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 1.7668 -8.1225 2.5908 30 1 3.2755 -9.8012 3.5743 31 1 4.8825 -10.6188 -0.2953 32 1 3.3793 -8.9323 -1.2737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920900156.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = -203.196170 kcal Electronic energy + Delta-G solvation = -22029.617199 eV Core-core repulsion = 17926.864452 eV Total energy + Delta-G solvation = -4102.752748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.46746 -49.30921 -47.48017 -40.34858 -39.31016 -36.56198 -33.44519 -32.17138 -31.61444 -30.47972 -27.62438 -25.09867 -23.54244 -23.02459 -21.29369 -20.86609 -18.72612 -18.38746 -18.03477 -17.66728 -16.84482 -16.42535 -16.05419 -15.97748 -15.86455 -15.14785 -14.70062 -14.31163 -14.23315 -14.05044 -13.79577 -13.63029 -13.55534 -13.41948 -13.00548 -12.62976 -12.42832 -12.05333 -11.50170 -11.41968 -11.17816 -10.87657 -10.84278 -10.52817 -9.84431 -9.76172 -9.55508 -9.38746 -9.23431 -8.50203 -6.15721 -4.21127 0.47151 0.79433 1.81819 2.20645 3.00607 3.25365 3.31509 3.34441 3.36741 3.76692 3.83444 4.08259 4.32809 4.44506 4.45564 4.67480 4.78839 4.98986 5.20902 5.34595 5.45199 5.64625 5.70318 5.81021 5.85589 5.91104 6.35401 6.45505 6.54298 7.39047 7.52552 7.63021 7.85252 8.14715 8.84035 9.43722 10.95623 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.003213 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.050144 B = 8711.671768 C = 9068.320250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.072 3.928 11 O -0.334 6.334 12 C 0.428 3.572 13 O -0.467 6.467 14 C 0.369 3.631 15 F -0.167 7.167 16 F -0.166 7.166 17 C -0.161 4.161 18 C -0.048 4.048 19 C -0.155 4.155 20 C 0.122 3.878 21 F -0.134 7.134 22 C -0.155 4.155 23 C -0.037 4.037 24 H 0.264 0.736 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.120 -21.052 2.239 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.000 4.000 11 O -0.249 6.249 12 C 0.265 3.735 13 O -0.354 6.354 14 C 0.331 3.669 15 F -0.148 7.148 16 F -0.147 7.147 17 C -0.162 4.162 18 C -0.066 4.066 19 C -0.173 4.173 20 C 0.103 3.897 21 F -0.113 7.113 22 C -0.174 4.174 23 C -0.055 4.055 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.164 0.836 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.314 -20.883 2.248 21.666 hybrid contribution 0.499 0.826 -0.021 0.966 sum 5.813 -20.057 2.227 21.001 Atomic orbital electron populations 1.69972 1.06109 1.27136 1.49395 1.24986 0.94933 0.99437 0.94734 0.86448 0.79739 0.82699 0.78290 1.20428 1.20997 1.19691 1.20937 0.93172 0.89918 1.52700 0.92169 1.19212 0.94156 0.88693 0.99241 1.23923 0.96729 0.77818 1.01516 1.86626 1.41913 1.15423 1.80948 1.23487 0.87078 0.87338 0.75562 1.90713 1.14405 1.87264 1.43014 1.18842 0.81806 0.90310 0.75914 1.93113 1.93363 1.92294 1.36037 1.93125 1.49371 1.96907 1.75302 1.19823 1.01005 0.99801 0.95568 1.20849 0.96908 0.95547 0.93270 1.21102 0.97113 0.98099 1.01015 1.17854 0.90725 0.89094 0.92014 1.91531 1.70025 1.63243 1.86485 1.21109 1.01908 1.00864 0.93493 1.20786 0.91730 0.92324 1.00648 0.92592 0.95086 0.95064 0.91629 0.91629 0.83615 0.83640 0.83688 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.53 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 10 C 0.07 1.54 5.40 37.16 0.20 1.74 16 11 O -0.33 -6.61 10.05 -39.26 -0.39 -7.00 16 12 C 0.43 7.35 7.33 36.01 0.26 7.61 16 13 O -0.47 -8.54 15.98 -18.74 -0.30 -8.84 16 14 C 0.37 5.19 2.26 -29.03 -0.07 5.13 16 15 F -0.17 -2.30 16.19 2.25 0.04 -2.26 16 16 F -0.17 -2.36 16.05 2.25 0.04 -2.33 16 17 C -0.16 -1.91 4.39 -104.62 -0.46 -2.37 16 18 C -0.05 -0.49 9.40 -39.59 -0.37 -0.86 16 19 C -0.15 -1.40 10.03 -39.52 -0.40 -1.79 16 20 C 0.12 1.17 7.30 -39.42 -0.29 0.88 16 21 F -0.13 -1.32 17.27 2.25 0.04 -1.28 16 22 C -0.16 -1.40 10.03 -39.51 -0.40 -1.80 16 23 C -0.04 -0.38 9.36 -39.59 -0.37 -0.75 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 28 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 29 H 0.15 1.31 7.59 -52.49 -0.40 0.91 16 30 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.14 1.30 7.60 -52.49 -0.40 0.90 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -30.01 305.01 -5.59 -35.60 By element: Atomic # 1 Polarization: -1.40 SS G_CDS: -2.87 Total: -4.27 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.44 Total: -5.00 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.74 Total: -25.24 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.69 Total: -15.85 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.11 Total: -5.87 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.01 -5.59 -35.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920900156.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.594 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds