Wall clock time and date at job start Tue Mar 31 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00087 * 2 1 4 4 H 1.48497 * 109.47276 * 270.00446 * 3 2 1 5 5 H 1.48505 * 109.46951 * 30.00504 * 3 2 1 6 6 H 1.48495 * 109.47066 * 150.00059 * 3 2 1 7 7 C 1.37877 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00014 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47026 * 180.02562 * 9 7 2 11 11 O 1.45195 * 109.46836 * 179.97438 * 10 9 7 12 12 C 1.34232 * 116.99791 * 179.97438 * 11 10 9 13 13 O 1.20818 * 120.00240 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99946 * 180.02562 * 12 11 10 15 15 F 1.39899 * 109.47182 * 85.00023 * 14 12 11 16 16 F 1.39898 * 109.46924 * 324.99875 * 14 12 11 17 17 C 1.50699 * 109.46844 * 205.00316 * 14 12 11 18 18 C 1.38250 * 119.97575 * 90.32534 * 17 14 12 19 19 C 1.38194 * 120.02377 * 180.27953 * 18 17 14 20 20 C 1.38460 * 119.97497 * 359.41202 * 19 18 17 21 21 F 1.35105 * 120.02800 * 180.30394 * 20 19 18 22 22 C 1.38467 * 119.94896 * 0.28520 * 20 19 18 23 23 C 1.38197 * 119.97188 * 359.97438 * 22 20 19 24 24 H 0.97003 * 120.00062 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47021 * 60.00119 * 9 7 2 26 26 H 1.09002 * 109.47093 * 299.99940 * 9 7 2 27 27 H 1.09000 * 109.47121 * 59.99651 * 10 9 7 28 28 H 1.09002 * 109.46985 * 299.99822 * 10 9 7 29 29 H 1.07998 * 119.98560 * 359.97438 * 18 17 14 30 30 H 1.08002 * 120.01531 * 179.69754 * 19 18 17 31 31 H 1.07998 * 120.01314 * 180.02562 * 22 20 19 32 32 H 1.07994 * 119.98607 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9195 0.0001 12 6 2.2504 -6.0453 -0.0004 13 8 3.4569 -5.9821 -0.0008 14 6 1.5662 -7.3880 -0.0004 15 9 1.2516 -7.7511 -1.3143 16 9 0.3921 -7.3131 0.7566 17 6 2.4857 -8.4203 0.5997 18 6 2.4519 -8.6686 1.9593 19 6 3.2987 -9.6108 2.5114 20 6 4.1727 -10.3149 1.7007 21 9 4.9968 -11.2407 2.2385 22 6 4.2014 -10.0699 0.3381 23 6 3.3574 -9.1233 -0.2110 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 1.7668 -8.1225 2.5908 30 1 3.2755 -9.8012 3.5743 31 1 4.8825 -10.6188 -0.2953 32 1 3.3793 -8.9323 -1.2737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920900156.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:28 Heat of formation + Delta-G solvation = -218.205017 kcal Electronic energy + Delta-G solvation = -22030.268032 eV Core-core repulsion = 17926.864452 eV Total energy + Delta-G solvation = -4103.403580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.59817 -50.05409 -48.61280 -41.77607 -40.14960 -38.08686 -35.50388 -33.11851 -32.40347 -32.34137 -28.83331 -26.93921 -24.28343 -24.22169 -22.95690 -22.19952 -20.05983 -19.34211 -19.15345 -18.71142 -18.47654 -17.79697 -17.55128 -17.06434 -16.71915 -16.58702 -15.89760 -15.71728 -15.39716 -15.09865 -14.98814 -14.67718 -14.54387 -14.40490 -14.33605 -14.31646 -13.55481 -13.27286 -13.16569 -13.03727 -12.67481 -12.62515 -12.20563 -12.05467 -11.64594 -11.63246 -11.42773 -10.62878 -10.27715 -10.03717 -8.28119 -6.41973 -0.35155 0.07256 0.43246 0.91444 1.42537 1.43563 1.55136 2.14019 2.35554 2.42038 2.57577 3.06673 3.06741 3.09402 3.30717 3.66621 3.77302 4.07775 4.08963 4.14080 4.21458 4.59804 4.61182 4.76950 4.92273 4.93563 4.96518 5.09588 5.35676 5.41519 5.63581 5.68075 6.01201 6.15469 6.71725 7.28222 8.84504 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.003213 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.050144 B = 8711.671768 C = 9068.320250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.550 4.550 8 H 0.069 0.931 9 C 0.028 3.972 10 C 0.086 3.914 11 O -0.348 6.348 12 C 0.427 3.573 13 O -0.476 6.476 14 C 0.379 3.621 15 F -0.165 7.165 16 F -0.168 7.168 17 C -0.180 4.180 18 C -0.055 4.055 19 C -0.150 4.150 20 C 0.117 3.883 21 F -0.135 7.135 22 C -0.150 4.150 23 C -0.044 4.044 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.008 0.992 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 -21.716 2.547 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.087 0.913 9 C -0.009 4.009 10 C 0.014 3.986 11 O -0.264 6.264 12 C 0.265 3.735 13 O -0.363 6.363 14 C 0.341 3.659 15 F -0.146 7.146 16 F -0.149 7.149 17 C -0.181 4.181 18 C -0.073 4.073 19 C -0.169 4.169 20 C 0.098 3.902 21 F -0.114 7.114 22 C -0.168 4.168 23 C -0.062 4.062 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.027 0.973 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.172 0.828 30 H 0.187 0.813 31 H 0.187 0.813 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.821 -21.576 2.555 22.773 hybrid contribution 0.026 0.926 -0.111 0.933 sum 6.848 -20.650 2.444 21.893 Atomic orbital electron populations 1.70099 1.07890 1.28350 1.50257 1.25978 0.95821 1.03486 0.94031 0.85303 0.78564 0.77659 0.78660 1.19586 1.20542 1.18523 1.21354 0.93822 0.90929 1.52658 0.91293 1.19022 0.94418 0.90514 0.96940 1.23467 0.95296 0.77730 1.02101 1.86599 1.42397 1.15760 1.81660 1.24127 0.87161 0.87542 0.74664 1.90696 1.14878 1.87473 1.43211 1.18765 0.81996 0.88947 0.76199 1.93117 1.93361 1.92040 1.36077 1.93122 1.49564 1.96840 1.75350 1.19815 1.01686 1.00104 0.96476 1.21016 0.97440 0.96032 0.92801 1.21341 0.96161 0.97130 1.02221 1.18030 0.90719 0.89050 0.92402 1.91534 1.70044 1.63262 1.86518 1.21352 1.01570 1.00241 0.93681 1.20958 0.91637 0.92498 1.01121 0.92304 0.97475 0.97316 0.90911 0.91044 0.82782 0.81313 0.81273 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.04 13.29 21.45 0.28 -54.75 16 2 C 0.01 0.33 5.46 84.65 0.46 0.80 16 3 Si 0.97 42.85 29.54 68.60 2.03 44.87 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.55 -30.47 9.11 25.60 0.23 -30.24 16 8 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 9 C 0.03 1.49 5.35 29.85 0.16 1.65 16 10 C 0.09 3.73 5.40 71.98 0.39 4.12 16 11 O -0.35 -13.91 10.05 -51.44 -0.52 -14.42 16 12 C 0.43 14.49 7.33 71.24 0.52 15.01 16 13 O -0.48 -17.04 15.98 21.99 0.35 -16.68 16 14 C 0.38 10.41 2.26 29.10 0.07 10.48 16 15 F -0.17 -4.43 16.19 44.97 0.73 -3.70 16 16 F -0.17 -4.71 16.05 44.97 0.72 -3.98 16 17 C -0.18 -4.05 4.39 -19.86 -0.09 -4.14 16 18 C -0.05 -1.05 9.40 22.26 0.21 -0.84 16 19 C -0.15 -2.39 10.03 22.31 0.22 -2.16 16 20 C 0.12 1.98 7.30 22.38 0.16 2.14 16 21 F -0.14 -2.34 17.27 44.97 0.78 -1.57 16 22 C -0.15 -2.37 10.03 22.31 0.22 -2.14 16 23 C -0.04 -0.84 9.36 22.26 0.21 -0.63 16 24 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 3.01 8.13 -2.39 -0.02 2.99 16 28 H 0.07 2.98 8.13 -2.39 -0.02 2.96 16 29 H 0.15 2.58 7.59 -2.91 -0.02 2.55 16 30 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.15 2.53 7.60 -2.91 -0.02 2.51 16 Total: -1.00 -63.81 305.01 8.30 -55.50 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: 1.16 Total: 0.69 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 2.77 Total: -5.95 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.28 Total: -54.75 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.17 Total: -31.11 kcal Atomic # 9 Polarization: -11.47 SS G_CDS: 2.23 Total: -9.25 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -63.81 8.30 -55.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920900156.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.703 kcal (2) G-P(sol) polarization free energy of solvation -63.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds