Wall clock time and date at job start Tue Mar 31 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99855 * 2 1 4 4 H 1.48501 * 109.47015 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46843 * 119.99501 * 3 2 1 6 6 H 1.48496 * 109.46872 * 239.99635 * 3 2 1 7 7 C 1.37874 * 119.99792 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 186.34665 * 7 2 1 9 9 C 1.50706 * 120.00475 * 6.35142 * 7 2 1 10 10 O 1.45200 * 112.84433 * 293.84721 * 9 7 2 11 11 C 1.34230 * 116.99800 * 294.96114 * 10 9 7 12 12 O 1.20828 * 119.99941 * 2.85347 * 11 10 9 13 13 C 1.50700 * 120.00084 * 182.84793 * 11 10 9 14 14 S 1.81392 * 109.47296 * 180.02562 * 13 11 10 15 15 O 1.42098 * 108.58209 * 294.48727 * 14 13 11 16 16 O 1.42104 * 108.57815 * 65.51645 * 14 13 11 17 17 C 1.81408 * 101.92274 * 180.02562 * 14 13 11 18 18 C 1.53005 * 117.49967 * 253.62405 * 17 14 13 19 19 C 1.52994 * 117.50006 * 185.00149 * 17 14 13 20 20 C 1.53773 * 113.61648 * 162.54057 * 9 7 2 21 21 C 1.53782 * 87.07906 * 220.01735 * 20 9 7 22 22 C 1.53776 * 113.61308 * 65.03621 * 9 7 2 23 23 H 0.97003 * 119.99830 * 175.04054 * 1 2 3 24 24 H 1.09002 * 109.47370 * 300.00726 * 13 11 10 25 25 H 1.09007 * 109.47087 * 60.00292 * 13 11 10 26 26 H 1.08998 * 115.54808 * 39.32613 * 17 14 13 27 27 H 1.09001 * 117.49484 * 0.02562 * 18 17 14 28 28 H 1.08993 * 117.50021 * 145.01859 * 18 17 14 29 29 H 1.08998 * 117.50393 * 214.97766 * 19 17 14 30 30 H 1.09000 * 117.49936 * 0.02562 * 19 17 14 31 31 H 1.09004 * 113.61242 * 334.56145 * 20 9 7 32 32 H 1.08993 * 113.61847 * 105.46990 * 20 9 7 33 33 H 1.08996 * 113.61477 * 270.88235 * 21 20 9 34 34 H 1.09001 * 113.69085 * 139.99011 * 21 20 9 35 35 H 1.08998 * 113.62111 * 254.53345 * 22 9 7 36 36 H 1.09001 * 113.61667 * 25.35878 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0796 -1.1969 0.1039 9 6 1.2580 -2.4953 -0.1433 10 8 0.3944 -2.7779 0.9893 11 6 0.9911 -2.9863 2.1735 12 8 2.1910 -2.8836 2.2718 13 6 0.1645 -3.3483 3.3804 14 16 1.2521 -3.5623 4.8162 15 8 2.0912 -4.6856 4.5852 16 8 1.8423 -2.3079 5.1280 17 6 0.0679 -3.9855 6.1237 18 6 -0.2386 -2.9148 7.1728 19 6 0.6095 -4.1320 7.5470 20 6 2.1538 -3.6780 -0.5475 21 6 1.0071 -4.1303 -1.4670 22 6 0.5618 -2.6589 -1.5046 23 1 -0.4850 -0.8369 -0.0726 24 1 -0.5514 -2.5516 3.5828 25 1 -0.3713 -4.2780 3.1883 26 1 -0.7465 -4.6453 5.8247 27 1 0.2710 -1.9561 7.0771 28 1 -1.2549 -2.8700 7.5642 29 1 0.1513 -4.8879 8.1847 30 1 1.6774 -3.9737 7.6979 31 1 3.0535 -3.3802 -1.0860 32 1 2.3576 -4.3705 0.2691 33 1 0.2906 -4.7909 -0.9788 34 1 1.3431 -4.5096 -2.4320 35 1 -0.5195 -2.5286 -1.4607 36 1 1.0255 -2.0814 -2.3044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122999185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:49 Heat of formation + Delta-G solvation = -128.465051 kcal Electronic energy + Delta-G solvation = -21792.672086 eV Core-core repulsion = 18370.460615 eV Total energy + Delta-G solvation = -3422.211472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.66063 -39.26232 -38.36109 -37.81901 -37.14782 -36.34354 -34.59623 -31.84398 -28.07564 -26.60663 -25.05591 -24.48879 -23.52572 -22.63191 -20.40577 -19.89273 -19.61088 -18.54531 -18.00618 -17.63372 -17.40144 -16.72265 -16.64415 -16.01750 -15.77864 -15.68905 -15.21480 -14.62715 -14.53719 -14.06074 -13.89327 -13.32902 -13.27755 -13.20978 -12.80936 -12.56382 -12.50561 -12.43628 -12.29895 -12.12925 -12.07473 -12.05420 -11.95742 -11.95320 -11.61489 -11.44146 -10.98709 -10.64462 -10.24458 -8.68503 -6.47369 -1.24956 1.19315 1.46708 1.50226 1.60323 1.69288 1.74145 2.19897 2.48174 2.73383 3.03848 3.10324 3.46312 3.46523 3.68173 3.75148 3.88016 3.91105 3.95742 4.06689 4.15905 4.38685 4.60404 4.66826 4.69886 4.84203 4.89255 4.94649 5.01603 5.04989 5.30699 5.41458 5.61702 6.00223 6.11425 6.53902 6.82378 7.33959 8.69854 Molecular weight = 288.09amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.005838 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.560869 B = 4794.946839 C = 5590.863721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.009 4.009 3 Si 1.101 2.899 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.612 4.612 8 H 0.036 0.964 9 C 0.176 3.824 10 O -0.350 6.350 11 C 0.472 3.528 12 O -0.536 6.536 13 C -0.624 4.624 14 S 2.460 3.540 15 O -0.967 6.967 16 O -0.969 6.969 17 C -0.654 4.654 18 C -0.125 4.125 19 C -0.126 4.126 20 C -0.149 4.149 21 C -0.120 4.120 22 C -0.103 4.103 23 H 0.272 0.728 24 H 0.191 0.809 25 H 0.207 0.793 26 H 0.204 0.796 27 H 0.107 0.893 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -9.581 11.416 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.213 4.213 3 Si 0.923 3.077 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.649 4.649 8 H 0.054 0.946 9 C 0.143 3.857 10 O -0.266 6.266 11 C 0.315 3.685 12 O -0.426 6.426 13 C -0.748 4.748 14 S 2.643 3.357 15 O -0.964 6.964 16 O -0.966 6.966 17 C -0.767 4.767 18 C -0.163 4.163 19 C -0.165 4.165 20 C -0.187 4.187 21 C -0.157 4.157 22 C -0.141 4.141 23 H 0.083 0.917 24 H 0.208 0.792 25 H 0.224 0.776 26 H 0.221 0.779 27 H 0.125 0.875 28 H 0.169 0.831 29 H 0.169 0.831 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.843 -7.827 11.406 15.017 hybrid contribution -0.225 -1.578 -0.400 1.643 sum -6.068 -9.404 11.006 15.697 Atomic orbital electron populations 1.70818 1.07123 1.31632 1.44766 1.27078 0.96767 1.05631 0.91785 0.83155 0.74601 0.72290 0.77652 1.19629 1.21594 1.18681 1.22256 0.94298 0.92420 1.55934 0.94595 1.21369 0.88706 0.93677 0.81986 1.86357 1.43768 1.78850 1.17614 1.22554 0.86773 0.73463 0.85707 1.90708 1.17450 1.48460 1.86033 1.30707 1.17517 1.16223 1.10402 1.06640 0.77411 0.74155 0.77451 1.93501 1.63945 1.53807 1.85161 1.93521 1.74756 1.44858 1.83476 1.31892 1.20317 1.17713 1.06827 1.23228 1.04818 0.93077 0.95148 1.23161 1.01265 1.02239 0.89793 1.23341 0.98515 0.97523 0.99343 1.22853 0.97033 0.95632 1.00181 1.22868 0.99597 0.96686 0.94970 0.91704 0.79189 0.77615 0.77855 0.87458 0.83142 0.83083 0.88208 0.89995 0.93561 0.89521 0.88924 0.92296 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.80 13.53 21.45 0.29 -53.51 16 2 C -0.01 -0.55 5.36 84.65 0.45 -0.09 16 3 Si 1.10 52.32 29.91 68.60 2.05 54.37 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.61 -36.14 7.37 25.60 0.19 -35.95 16 8 H 0.04 2.24 7.82 -2.91 -0.02 2.22 16 9 C 0.18 9.12 0.11 -11.02 0.00 9.12 16 10 O -0.35 -17.49 9.22 -51.42 -0.47 -17.96 16 11 C 0.47 22.38 7.37 71.24 0.52 22.90 16 12 O -0.54 -29.78 13.74 24.46 0.34 -29.44 16 13 C -0.62 -18.88 6.40 71.24 0.46 -18.43 16 14 S 2.46 76.92 4.35 -56.49 -0.25 76.68 16 15 O -0.97 -37.42 17.95 -125.74 -2.26 -39.68 16 16 O -0.97 -39.36 17.10 -125.75 -2.15 -41.51 16 17 C -0.65 -10.46 6.26 30.59 0.19 -10.27 16 18 C -0.12 -1.68 10.12 30.60 0.31 -1.37 16 19 C -0.13 -1.71 10.30 30.59 0.31 -1.39 16 20 C -0.15 -6.79 6.90 31.12 0.21 -6.57 16 21 C -0.12 -4.38 8.03 31.12 0.25 -4.13 16 22 C -0.10 -4.57 6.55 31.12 0.20 -4.37 16 23 H 0.27 15.97 5.76 -92.71 -0.53 15.43 16 24 H 0.19 4.64 8.14 -2.39 -0.02 4.62 16 25 H 0.21 3.97 8.14 -2.39 -0.02 3.95 16 26 H 0.20 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.11 1.84 7.58 -2.39 -0.02 1.83 16 28 H 0.15 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 3.70 8.09 -2.39 -0.02 3.68 16 32 H 0.05 2.14 7.33 -2.39 -0.02 2.12 16 33 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 35 H 0.06 2.57 7.74 -2.39 -0.02 2.55 16 36 H 0.08 3.79 8.09 -2.39 -0.02 3.77 16 Total: -1.00 -88.37 319.41 1.97 -86.40 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.32 Total: 15.21 kcal Atomic # 6 Polarization: -53.66 SS G_CDS: 3.11 Total: -50.55 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.29 Total: -53.51 kcal Atomic # 8 Polarization: -124.05 SS G_CDS: -4.54 Total: -128.60 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 2.05 Total: 54.37 kcal Atomic # 16 Polarization: 76.92 SS G_CDS: -0.25 Total: 76.68 kcal Total: -88.37 1.97 -86.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122999185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.066 kcal (2) G-P(sol) polarization free energy of solvation -88.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds