Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31163 * 119.77394 * 2 1 4 4 C 1.33490 * 121.65528 * 180.02562 * 3 2 1 5 5 N 1.34961 * 119.50160 * 179.97438 * 4 3 2 6 6 C 1.31973 * 120.00714 * 274.61901 * 5 4 3 7 7 N 1.37555 * 119.99495 * 3.49668 * 6 5 4 8 8 C 1.46908 * 120.00383 * 183.49640 * 6 5 4 9 9 N 1.30730 * 125.54937 * 359.69709 * 8 6 5 10 10 C 1.30800 * 115.84475 * 179.77783 * 9 8 6 11 11 C 1.34180 * 115.78969 * 0.51929 * 10 9 8 12 12 S 1.71056 * 109.14057 * 359.71855 * 11 10 9 13 13 C 1.40613 * 120.98904 * 359.73408 * 4 3 2 14 14 C 1.36234 * 119.43232 * 0.54926 * 13 4 3 15 15 C 1.41048 * 119.77820 * 180.02562 * 2 1 3 16 16 C 1.40807 * 120.49913 * 359.97438 * 15 2 1 17 17 H 1.07997 * 120.00195 * 335.12210 * 16 15 2 18 18 C 1.39942 * 119.99753 * 155.11826 * 16 15 2 19 19 N 1.30859 * 119.99876 * 343.26425 * 18 16 15 20 20 Si 1.86802 * 119.99839 * 163.25972 * 18 16 15 21 21 H 1.48496 * 109.46829 * 60.00427 * 20 18 16 22 22 H 1.48498 * 109.47002 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47152 * 300.00249 * 20 18 16 24 24 H 1.08997 * 109.46885 * 269.97025 * 1 2 3 25 25 H 1.08998 * 109.47514 * 29.97183 * 1 2 3 26 26 H 1.08998 * 109.46588 * 149.97667 * 1 2 3 27 27 H 0.97001 * 120.00116 * 353.99729 * 7 6 5 28 28 H 0.97003 * 119.99715 * 174.00190 * 7 6 5 29 29 H 1.07998 * 122.09906 * 180.21410 * 10 9 8 30 30 H 1.08002 * 125.42395 * 179.71969 * 11 10 9 31 31 H 1.07997 * 120.28902 * 180.28193 * 13 4 3 32 32 H 1.08004 * 120.76405 * 179.73989 * 14 13 4 33 33 H 0.97001 * 119.99702 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1583 1.1385 0.0000 4 6 3.4925 1.1823 -0.0005 5 7 4.1182 2.3781 -0.0010 6 6 4.3422 3.0053 -1.1404 7 7 3.8748 2.4754 -2.3205 8 6 5.0908 4.2694 -1.1483 9 7 5.5778 4.8709 -0.0947 10 6 6.2180 5.9888 -0.3214 11 6 6.2807 6.3757 -1.6046 12 16 5.4718 5.2247 -2.5777 13 6 4.2557 0.0013 0.0045 14 6 3.6225 -1.2049 -0.0014 15 6 2.2075 -1.2242 -0.0005 16 6 1.5094 -2.4471 -0.0006 17 1 0.5050 -2.4954 0.3933 18 6 2.1171 -3.5997 -0.5110 19 7 3.1753 -3.4982 -1.2741 20 14 1.4178 -5.2831 -0.1028 21 1 0.0181 -5.3693 -0.5912 22 1 2.2368 -6.3322 -0.7614 23 1 1.4423 -5.4859 1.3680 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3632 -0.8898 -0.5142 27 1 3.4574 1.5998 -2.3274 28 1 3.9626 2.9773 -3.1459 29 1 6.6635 6.5666 0.4749 30 1 6.7649 7.2712 -1.9655 31 1 5.3346 0.0500 0.0086 32 1 4.1875 -2.1254 -0.0019 33 1 3.5963 -4.2971 -1.6282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157497193.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = 79.417673 kcal Electronic energy + Delta-G solvation = -19270.546243 eV Core-core repulsion = 16229.243664 eV Total energy + Delta-G solvation = -3041.302578 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 288.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.88287 -40.42639 -38.29498 -35.87213 -34.03145 -32.82288 -31.82213 -31.06587 -28.71541 -27.72990 -26.08902 -23.91539 -22.57501 -22.08735 -20.29184 -19.40675 -19.18892 -18.16622 -17.76960 -17.24741 -16.58596 -16.35326 -15.67423 -15.54182 -14.98731 -14.86064 -14.44646 -14.18323 -13.85449 -13.75749 -13.43187 -13.21782 -13.01274 -12.78865 -12.64633 -12.49628 -12.29432 -11.74782 -11.29651 -10.94719 -10.76923 -10.62798 -10.23249 -10.14409 -9.90583 -9.22830 -9.02505 -8.61540 -6.30661 -0.70800 0.11850 0.69214 0.71689 1.05427 1.29882 1.40865 1.51155 1.54831 2.16902 2.19148 2.32179 2.68685 3.46651 3.59372 3.78522 4.12540 4.37023 4.41906 4.47119 4.57865 4.72744 4.95048 4.99264 5.04460 5.12958 5.17919 5.29233 5.51431 5.63261 5.86995 5.97554 6.02950 6.45738 6.62758 6.77424 6.79453 6.82579 7.45497 7.77155 8.24962 Molecular weight = 288.07amu Principal moments of inertia in cm(-1) A = 0.036197 B = 0.003525 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.368822 B = 7941.866906 C = 8146.518017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.005 4.005 3 N -0.489 5.489 4 C 0.161 3.839 5 N -0.528 5.528 6 C 0.472 3.528 7 N -0.856 5.856 8 C 0.031 3.969 9 N -0.445 5.445 10 C 0.008 3.992 11 C -0.250 4.250 12 S 0.245 5.755 13 C -0.158 4.158 14 C -0.140 4.140 15 C 0.036 3.964 16 C -0.466 4.466 17 H 0.092 0.908 18 C 0.036 3.964 19 N -0.816 5.816 20 Si 0.985 3.015 21 H -0.254 1.254 22 H -0.269 1.269 23 H -0.263 1.263 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.405 0.595 28 H 0.405 0.595 29 H 0.200 0.800 30 H 0.226 0.774 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.108 12.782 -7.565 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.148 4.148 3 N -0.201 5.201 4 C -0.070 4.070 5 N -0.257 5.257 6 C 0.193 3.807 7 N -0.409 5.409 8 C -0.241 4.241 9 N -0.162 5.162 10 C -0.147 4.147 11 C -0.392 4.392 12 S 0.498 5.502 13 C -0.181 4.181 14 C -0.166 4.166 15 C 0.031 3.969 16 C -0.495 4.495 17 H 0.110 0.890 18 C -0.181 4.181 19 N -0.441 5.441 20 Si 0.805 3.195 21 H -0.178 1.178 22 H -0.193 1.193 23 H -0.187 1.187 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.236 0.764 28 H 0.236 0.764 29 H 0.217 0.783 30 H 0.243 0.757 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.687 13.172 -7.284 15.765 hybrid contribution 0.520 -1.573 0.216 1.670 sum 5.207 11.599 -7.068 14.547 Atomic orbital electron populations 1.20233 0.88827 1.01728 1.01190 1.21531 0.96747 0.87582 1.08969 1.67257 1.08531 1.30813 1.13536 1.18657 0.88270 0.89298 1.10805 1.69011 1.25468 1.09227 1.21976 1.19735 0.88444 0.89222 0.83255 1.42980 1.66695 1.23399 1.07812 1.24990 1.06734 0.99043 0.93379 1.66815 1.09006 1.08709 1.31623 1.22258 1.01182 0.93327 0.97983 1.27258 1.07481 1.07447 0.96982 1.83382 1.45370 1.12394 1.09061 1.21352 0.98627 0.92908 1.05173 1.21225 0.95075 0.96272 1.03986 1.18629 0.92553 0.94147 0.91554 1.19720 1.02169 0.92482 1.35085 0.89001 1.26853 0.94360 1.05180 0.91713 1.69847 1.18426 1.33557 1.22226 0.85192 0.79514 0.75191 0.79569 1.17781 1.19344 1.18727 0.92391 0.92351 0.90894 0.76400 0.76421 0.78306 0.75713 0.88093 0.86616 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.66 9.57 71.24 0.68 -1.98 16 2 C 0.00 -0.25 6.86 43.35 0.30 0.05 16 3 N -0.49 -25.72 10.32 -180.63 -1.86 -27.58 16 4 C 0.16 8.33 5.19 134.43 0.70 9.03 16 5 N -0.53 -25.19 10.33 -186.44 -1.93 -27.11 16 6 C 0.47 17.98 7.78 135.73 1.06 19.03 16 7 N -0.86 -27.77 8.86 -51.26 -0.45 -28.22 16 8 C 0.03 0.96 7.45 87.13 0.65 1.61 16 9 N -0.45 -14.22 10.59 -190.50 -2.02 -16.24 16 10 C 0.01 0.18 11.24 83.92 0.94 1.12 16 11 C -0.25 -3.56 11.08 66.89 0.74 -2.81 16 12 S 0.24 4.24 22.35 -56.49 -1.26 2.98 16 13 C -0.16 -8.20 9.97 22.38 0.22 -7.98 16 14 C -0.14 -7.57 8.71 22.61 0.20 -7.37 16 15 C 0.04 1.94 5.58 -21.15 -0.12 1.82 16 16 C -0.47 -23.81 8.13 23.31 0.19 -23.62 16 17 H 0.09 4.41 6.84 -2.91 -0.02 4.39 16 18 C 0.04 1.70 5.18 85.25 0.44 2.14 16 19 N -0.82 -40.58 10.93 21.83 0.24 -40.34 16 20 Si 0.98 36.14 29.59 68.60 2.03 38.17 16 21 H -0.25 -8.88 7.11 99.48 0.71 -8.18 16 22 H -0.27 -9.40 7.11 99.48 0.71 -8.70 16 23 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 24 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 26 H 0.07 2.99 6.75 -2.39 -0.02 2.97 16 27 H 0.41 15.37 7.47 -92.71 -0.69 14.68 16 28 H 0.41 9.44 8.05 -92.71 -0.75 8.69 16 29 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.23 1.12 8.06 -2.91 -0.02 1.10 16 31 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 32 H 0.12 6.38 6.23 -2.91 -0.02 6.36 16 33 H 0.29 13.11 8.30 -92.71 -0.77 12.34 16 Total: -1.00 -70.54 305.14 0.49 -70.05 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -0.25 Total: 37.27 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 6.00 Total: -8.97 kcal Atomic # 7 Polarization: -133.47 SS G_CDS: -6.02 Total: -139.50 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.26 Total: 2.98 kcal Total: -70.54 0.49 -70.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157497193.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.463 kcal (2) G-P(sol) polarization free energy of solvation -70.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds