Wall clock time and date at job start Tue Mar 31 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99876 * 3 2 1 5 5 H 1.48492 * 109.47317 * 29.99805 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00532 * 3 2 1 7 7 C 1.37874 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.47010 * 314.99982 * 13 12 11 15 15 F 1.39896 * 109.47129 * 74.99840 * 13 12 11 16 16 O 1.42901 * 109.46856 * 195.00086 * 13 12 11 17 17 C 1.35739 * 117.00077 * 299.99639 * 16 13 12 18 18 C 1.39321 * 120.83874 * 180.02562 * 17 16 13 19 19 C 1.37917 * 119.12107 * 179.97438 * 18 17 16 20 20 N 1.31997 * 120.84388 * 359.97438 * 19 18 17 21 21 C 1.32041 * 121.84149 * 0.02562 * 20 19 18 22 22 Cl 1.73607 * 119.60708 * 179.97438 * 21 20 19 23 23 C 1.38168 * 120.79006 * 359.73879 * 21 20 19 24 24 H 0.97004 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 26 26 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 27 27 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 28 28 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 29 29 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 30 30 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 31 31 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 32 32 H 1.07998 * 120.44012 * 0.02562 * 18 17 16 33 33 H 1.07996 * 119.57973 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.45931 * 180.26802 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 7.5096 -4.0609 -0.0003 14 1 7.8925 -3.3437 -0.7264 15 9 7.9844 -3.7329 1.2741 16 8 7.9511 -5.3743 -0.3498 17 6 7.5588 -6.3918 0.4586 18 6 7.9438 -7.7041 0.1929 19 6 7.5254 -8.7105 1.0381 20 7 6.7705 -8.4429 2.0873 21 6 6.3850 -7.2127 2.3726 22 17 5.3916 -6.9269 3.7674 23 6 6.7667 -6.1495 1.5771 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1502 -0.8903 28 1 3.6578 -3.1506 0.8896 29 1 5.9149 -2.1230 0.8899 30 1 5.9148 -2.1228 -0.8900 31 1 5.6656 -4.5375 -0.7825 32 1 8.5624 -7.9302 -0.6630 33 1 7.8192 -9.7304 0.8389 34 1 6.4519 -5.1449 1.8179 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:14 Heat of formation + Delta-G solvation = -59.353743 kcal Electronic energy + Delta-G solvation = -20091.462221 eV Core-core repulsion = 16579.036380 eV Total energy + Delta-G solvation = -3512.425841 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.22510 -40.80730 -38.70539 -36.70479 -36.22651 -33.42237 -31.89016 -31.40520 -31.14741 -27.33927 -25.09042 -23.82135 -22.94406 -22.31046 -20.36773 -19.20362 -18.08045 -16.99726 -16.80287 -16.62804 -16.26273 -15.68643 -15.21612 -14.96260 -14.40169 -14.31962 -14.07212 -13.85717 -13.59040 -13.34370 -12.93137 -12.60522 -12.23279 -11.83926 -11.77751 -11.71921 -11.35272 -11.13299 -10.90600 -10.08679 -9.98003 -9.87201 -9.73400 -9.48310 -9.25875 -9.23059 -8.88355 -8.58423 -6.08343 -4.07090 0.69237 0.94548 1.69609 2.36258 3.26213 3.34389 3.36524 3.36992 3.43186 4.10175 4.21701 4.40607 4.49745 4.68434 4.75607 4.91310 5.08480 5.24520 5.31218 5.36102 5.46388 5.70001 5.88198 6.02902 6.14592 6.33373 6.46593 6.64266 6.77110 7.03033 7.21168 7.33211 7.50828 7.73530 8.48968 8.96620 9.53469 11.05080 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.003640 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.553872 B = 7690.636874 C = 8455.937497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.098 4.098 11 C 0.057 3.943 12 N -0.726 5.726 13 C 0.412 3.588 14 H 0.130 0.870 15 F -0.194 7.194 16 O -0.313 6.313 17 C 0.172 3.828 18 C -0.199 4.199 19 C 0.141 3.859 20 N -0.500 5.500 21 C 0.201 3.799 22 Cl -0.023 7.023 23 C -0.205 4.205 24 H 0.263 0.737 25 H 0.017 0.983 26 H 0.010 0.990 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.369 0.631 32 H 0.148 0.852 33 H 0.171 0.829 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.123 -13.883 -0.127 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.050 4.050 10 C -0.136 4.136 11 C -0.070 4.070 12 N -0.371 5.371 13 C 0.250 3.750 14 H 0.146 0.854 15 F -0.175 7.175 16 O -0.225 6.225 17 C 0.119 3.881 18 C -0.220 4.220 19 C -0.015 4.015 20 N -0.215 5.215 21 C 0.038 3.962 22 Cl 0.006 6.994 23 C -0.227 4.227 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.193 0.807 32 H 0.165 0.835 33 H 0.188 0.812 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 18.732 -14.455 1.050 23.684 hybrid contribution 0.570 2.007 -1.138 2.377 sum 19.302 -12.447 -0.088 22.967 Atomic orbital electron populations 1.69918 1.06311 1.26925 1.50953 1.25041 0.94741 0.99184 0.94547 0.86770 0.80365 0.83659 0.78417 1.20364 1.21333 1.19033 1.21102 0.89343 0.94534 1.50978 0.90972 1.19536 0.97390 0.91766 0.96279 1.21462 0.89784 1.00290 1.02110 1.22280 0.98890 0.84822 1.01057 1.60632 1.05384 1.18456 1.52655 1.23363 0.88224 0.81807 0.81570 0.85358 1.92966 1.88389 1.92219 1.43940 1.86463 1.70870 1.15163 1.50016 1.19016 0.92044 0.88051 0.89017 1.21582 1.06028 0.90187 1.04183 1.22458 0.91586 0.99416 0.88061 1.67058 1.13517 1.21391 1.19485 1.21445 0.94275 0.89637 0.90829 1.98429 1.66727 1.95211 1.39046 1.22580 1.01626 1.02850 0.95595 0.92689 0.96451 0.97166 0.92643 0.91475 0.90301 0.94343 0.80722 0.83456 0.81190 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.52 -14.57 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.10 -1.77 5.41 -26.73 -0.14 -1.92 16 11 C 0.06 0.77 5.59 -3.82 -0.02 0.75 16 12 N -0.73 -8.47 4.35 -118.16 -0.51 -8.99 16 13 C 0.41 4.26 4.41 60.07 0.26 4.52 16 14 H 0.13 0.99 7.97 -51.93 -0.41 0.57 16 15 F -0.19 -2.39 15.48 2.25 0.03 -2.36 16 16 O -0.31 -3.30 10.33 -18.93 -0.20 -3.49 16 17 C 0.17 1.92 6.47 -38.83 -0.25 1.67 16 18 C -0.20 -1.81 10.07 -39.30 -0.40 -2.20 16 19 C 0.14 1.31 11.17 -17.60 -0.20 1.11 16 20 N -0.50 -6.21 10.34 -10.43 -0.11 -6.32 16 21 C 0.20 2.65 7.27 -17.49 -0.13 2.52 16 22 Cl -0.02 -0.30 29.11 -51.86 -1.51 -1.81 16 23 C -0.20 -2.60 7.97 -39.26 -0.31 -2.91 16 24 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.04 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.37 3.95 8.73 -39.29 -0.34 3.61 16 32 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.18 2.40 5.10 -52.49 -0.27 2.14 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -31.42 310.80 -7.14 -38.56 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -3.91 Total: -0.13 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.73 Total: -9.93 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.15 Total: -42.16 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.20 Total: -3.49 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.03 Total: -2.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.42 -7.14 -38.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.790 kcal (2) G-P(sol) polarization free energy of solvation -31.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds