Wall clock time and date at job start Tue Mar 31 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48503 * 109.46869 * 269.99876 * 3 2 1 5 5 H 1.48492 * 109.47317 * 29.99805 * 3 2 1 6 6 H 1.48499 * 109.46841 * 150.00532 * 3 2 1 7 7 C 1.37874 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99821 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47387 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47360 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99870 * 180.02562 * 12 11 10 14 14 H 1.09005 * 109.47010 * 314.99982 * 13 12 11 15 15 F 1.39896 * 109.47129 * 74.99840 * 13 12 11 16 16 O 1.42901 * 109.46856 * 195.00086 * 13 12 11 17 17 C 1.35739 * 117.00077 * 299.99639 * 16 13 12 18 18 C 1.39321 * 120.83874 * 180.02562 * 17 16 13 19 19 C 1.37917 * 119.12107 * 179.97438 * 18 17 16 20 20 N 1.31997 * 120.84388 * 359.97438 * 19 18 17 21 21 C 1.32041 * 121.84149 * 0.02562 * 20 19 18 22 22 Cl 1.73607 * 119.60708 * 179.97438 * 21 20 19 23 23 C 1.38168 * 120.79006 * 359.73879 * 21 20 19 24 24 H 0.97004 * 119.99803 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47558 * 59.99970 * 9 7 2 26 26 H 1.08998 * 109.47216 * 299.99633 * 9 7 2 27 27 H 1.09001 * 109.46514 * 59.99676 * 10 9 7 28 28 H 1.08998 * 109.46924 * 300.00156 * 10 9 7 29 29 H 1.09001 * 109.47393 * 60.00433 * 11 10 9 30 30 H 1.08998 * 109.47408 * 300.00078 * 11 10 9 31 31 H 1.00901 * 110.99869 * 56.04956 * 12 11 10 32 32 H 1.07998 * 120.44012 * 0.02562 * 18 17 16 33 33 H 1.07996 * 119.57973 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.45931 * 180.26802 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 7 6.0411 -4.0217 -0.0009 13 6 7.5096 -4.0609 -0.0003 14 1 7.8925 -3.3437 -0.7264 15 9 7.9844 -3.7329 1.2741 16 8 7.9511 -5.3743 -0.3498 17 6 7.5588 -6.3918 0.4586 18 6 7.9438 -7.7041 0.1929 19 6 7.5254 -8.7105 1.0381 20 7 6.7705 -8.4429 2.0873 21 6 6.3850 -7.2127 2.3726 22 17 5.3916 -6.9269 3.7674 23 6 6.7667 -6.1495 1.5771 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1502 -0.8903 28 1 3.6578 -3.1506 0.8896 29 1 5.9149 -2.1230 0.8899 30 1 5.9148 -2.1228 -0.8900 31 1 5.6656 -4.5375 -0.7825 32 1 8.5624 -7.9302 -0.6630 33 1 7.8192 -9.7304 0.8389 34 1 6.4519 -5.1449 1.8179 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:14 Heat of formation + Delta-G solvation = -81.603298 kcal Electronic energy + Delta-G solvation = -20092.427034 eV Core-core repulsion = 16579.036380 eV Total energy + Delta-G solvation = -3513.390654 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.08912 -41.62584 -39.53445 -37.67460 -37.39075 -35.22642 -33.26537 -32.53662 -32.08348 -28.87727 -26.19655 -24.65615 -24.16111 -23.40425 -21.96634 -20.08042 -19.07714 -18.72226 -17.89145 -17.51000 -17.13145 -16.51850 -16.40141 -16.15189 -15.87576 -15.42795 -15.00168 -14.82882 -14.78994 -14.45896 -14.22771 -13.95502 -13.76265 -13.21728 -12.81295 -12.68365 -12.65986 -12.48605 -12.33703 -11.82367 -11.59529 -11.53373 -11.30800 -10.82391 -10.75828 -10.35883 -10.05285 -9.77185 -8.28809 -6.33548 -0.13481 0.11681 0.77724 1.36503 1.39665 1.51085 1.58150 2.36948 2.49664 2.59485 3.06867 3.36671 3.43247 3.71822 3.85980 3.91886 4.11636 4.19826 4.26854 4.35430 4.59320 4.66899 4.75925 4.88930 4.93092 5.06817 5.26291 5.39258 5.57417 5.59799 5.66452 5.68962 6.15900 6.29455 6.69390 6.75556 7.31216 8.88294 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.020425 B = 0.003640 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.553872 B = 7690.636874 C = 8455.937497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.534 4.534 8 H 0.027 0.973 9 C -0.010 4.010 10 C -0.090 4.090 11 C 0.073 3.927 12 N -0.735 5.735 13 C 0.411 3.589 14 H 0.166 0.834 15 F -0.207 7.207 16 O -0.307 6.307 17 C 0.160 3.840 18 C -0.186 4.186 19 C 0.143 3.857 20 N -0.522 5.522 21 C 0.183 3.817 22 Cl -0.038 7.038 23 C -0.217 4.217 24 H 0.266 0.734 25 H 0.020 0.980 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.375 0.625 32 H 0.181 0.819 33 H 0.210 0.790 34 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.273 -13.738 -1.515 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.055 4.055 12 N -0.381 5.381 13 C 0.250 3.750 14 H 0.183 0.817 15 F -0.189 7.189 16 O -0.218 6.218 17 C 0.107 3.893 18 C -0.207 4.207 19 C -0.013 4.013 20 N -0.237 5.237 21 C 0.020 3.980 22 Cl -0.010 7.010 23 C -0.239 4.239 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.199 0.801 32 H 0.198 0.802 33 H 0.227 0.773 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 21.904 -14.335 -0.342 26.180 hybrid contribution -0.442 1.805 -0.747 2.003 sum 21.462 -12.530 -1.089 24.875 Atomic orbital electron populations 1.70092 1.08507 1.28168 1.52776 1.26104 0.95643 1.03819 0.94117 0.85588 0.79527 0.77803 0.79287 1.18872 1.21402 1.16589 1.21524 0.92457 0.92933 1.50312 0.95435 1.19486 0.93608 0.94864 0.96857 1.21243 0.93344 0.97190 1.01080 1.21938 0.95232 0.86190 1.02117 1.60414 1.06870 1.17388 1.53398 1.23701 0.87215 0.82421 0.81675 0.81740 1.92946 1.88437 1.92321 1.45181 1.86483 1.70619 1.15065 1.49671 1.19259 0.92075 0.89170 0.88750 1.21981 1.05087 0.88966 1.04620 1.23181 0.90041 1.01308 0.86723 1.67071 1.14619 1.21027 1.21020 1.21494 0.95155 0.90331 0.91009 1.98412 1.67287 1.95337 1.39934 1.22475 1.02719 1.02086 0.96582 0.92567 0.96121 0.95580 0.92838 0.93556 0.90548 0.91911 0.80057 0.80151 0.77330 0.81972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 2 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 3 Si 0.96 43.39 27.47 68.60 1.88 45.27 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.24 -10.04 6.54 99.48 0.65 -9.39 16 7 C -0.53 -30.56 9.66 25.60 0.25 -30.31 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.21 5.41 30.59 0.17 -3.05 16 11 C 0.07 1.82 5.59 86.30 0.48 2.30 16 12 N -0.74 -15.81 4.35 -627.95 -2.73 -18.54 16 13 C 0.41 7.38 4.41 127.69 0.56 7.95 16 14 H 0.17 1.83 7.97 -2.38 -0.02 1.81 16 15 F -0.21 -4.76 15.48 44.97 0.70 -4.07 16 16 O -0.31 -5.59 10.33 -90.63 -0.94 -6.53 16 17 C 0.16 3.27 6.47 22.76 0.15 3.41 16 18 C -0.19 -2.78 10.07 22.45 0.23 -2.56 16 19 C 0.14 2.26 11.17 84.59 0.95 3.21 16 20 N -0.52 -12.42 10.34 -186.92 -1.93 -14.35 16 21 C 0.18 4.80 7.27 84.64 0.62 5.41 16 22 Cl -0.04 -1.03 29.11 -2.72 -0.08 -1.11 16 23 C -0.22 -5.38 7.97 22.48 0.18 -5.20 16 24 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 25 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 26 H 0.03 1.07 7.57 -2.39 -0.02 1.06 16 27 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 30 H 0.06 1.29 8.09 -2.39 -0.02 1.27 16 31 H 0.38 7.33 8.73 -89.69 -0.78 6.55 16 32 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.21 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.16 4.45 5.10 -2.91 -0.01 4.43 16 Total: -1.00 -70.92 310.80 1.65 -69.27 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.29 Total: 8.71 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 4.16 Total: -18.74 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -4.37 Total: -92.81 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.94 Total: -6.53 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.70 Total: -4.07 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.27 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -70.92 1.65 -69.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.332 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds