Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99673 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.46807 * 45.00301 * 13 12 11 15 15 F 1.39901 * 109.47474 * 284.99906 * 13 12 11 16 16 O 1.42910 * 109.46887 * 165.00172 * 13 12 11 17 17 C 1.35742 * 116.99844 * 60.00020 * 16 13 12 18 18 C 1.39322 * 120.83818 * 359.72262 * 17 16 13 19 19 C 1.37916 * 119.11836 * 179.72385 * 18 17 16 20 20 N 1.32001 * 120.84104 * 0.56122 * 19 18 17 21 21 C 1.32039 * 121.84462 * 359.71462 * 20 19 18 22 22 Cl 1.73599 * 119.60652 * 180.02562 * 21 20 19 23 23 C 1.38164 * 120.78903 * 359.97438 * 21 20 19 24 24 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 26 26 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 27 27 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 28 28 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 31 31 H 1.00895 * 111.00438 * 303.95603 * 12 11 10 32 32 H 1.07998 * 120.44077 * 0.02562 * 18 17 16 33 33 H 1.08007 * 119.58064 * 180.27106 * 19 18 17 34 34 H 1.07997 * 120.45642 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7342 -7.3950 -0.0018 14 1 0.9220 -7.3677 -0.7282 15 9 1.2123 -7.6425 1.2724 16 8 2.6510 -8.4341 -0.3511 17 6 3.7280 -8.6033 0.4577 18 6 3.9199 -7.7883 1.5713 19 6 5.0235 -7.9951 2.3721 20 7 5.8973 -8.9430 2.0885 21 6 5.7536 -9.7318 1.0395 22 17 6.9381 -10.9604 0.7216 23 6 4.6711 -9.5919 0.1924 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 0.8886 30 1 0.8537 -5.0446 -0.8913 31 1 3.0695 -6.0363 -0.7831 32 1 3.2112 -7.0082 1.8070 33 1 5.1772 -7.3705 3.2397 34 1 4.5586 -10.2404 -0.6638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157637961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = -63.470606 kcal Electronic energy + Delta-G solvation = -19838.532688 eV Core-core repulsion = 16325.928327 eV Total energy + Delta-G solvation = -3512.604361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.17952 -40.79193 -38.69273 -36.84273 -36.15328 -33.44699 -31.94053 -31.24556 -30.98947 -26.95500 -24.98026 -23.94547 -22.94890 -22.39431 -20.46170 -19.17388 -18.00890 -16.96929 -16.72139 -16.44052 -16.19596 -15.52342 -15.15954 -14.95559 -14.51588 -14.39394 -14.07446 -13.91711 -13.58122 -13.28855 -12.75845 -12.38141 -12.09229 -11.85486 -11.65760 -11.57045 -11.56821 -10.92181 -10.79429 -10.62356 -9.99132 -9.86680 -9.54289 -9.44102 -9.26282 -9.19651 -8.82666 -8.41813 -6.07129 -4.09960 0.70406 0.94918 1.46415 2.48976 3.29387 3.34062 3.35974 3.39762 3.47230 4.15942 4.30510 4.40767 4.41935 4.70826 4.78076 4.89932 5.26609 5.29013 5.38132 5.42084 5.49184 5.81034 5.99913 6.04044 6.23887 6.42561 6.54686 6.78360 6.94353 7.10089 7.52178 7.56743 7.69071 7.91513 8.33510 8.96631 9.54770 11.04198 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.002866 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.467464 B = 9768.575304 C =10445.741434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.058 3.942 12 N -0.727 5.727 13 C 0.413 3.587 14 H 0.130 0.870 15 F -0.194 7.194 16 O -0.315 6.315 17 C 0.173 3.827 18 C -0.216 4.216 19 C 0.144 3.856 20 N -0.498 5.498 21 C 0.198 3.802 22 Cl -0.030 7.030 23 C -0.185 4.185 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.368 0.632 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.769 -20.410 -0.063 21.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.143 4.143 11 C -0.069 4.069 12 N -0.371 5.371 13 C 0.252 3.748 14 H 0.147 0.853 15 F -0.175 7.175 16 O -0.227 6.227 17 C 0.120 3.880 18 C -0.237 4.237 19 C -0.011 4.011 20 N -0.213 5.213 21 C 0.034 3.966 22 Cl -0.001 7.001 23 C -0.207 4.207 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.191 0.809 32 H 0.192 0.808 33 H 0.187 0.813 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.411 -20.645 0.947 21.955 hybrid contribution -0.573 1.076 -1.272 1.762 sum 6.837 -19.570 -0.325 20.732 Atomic orbital electron populations 1.69946 1.06083 1.26843 1.50618 1.25022 0.94859 0.99329 0.95200 0.86641 0.79581 0.83007 0.78685 1.20229 1.21265 1.20156 1.21175 0.93030 0.90949 1.50943 0.92664 1.19054 0.93899 0.91198 0.97294 1.21644 0.99314 0.92178 1.01202 1.22269 0.93702 0.89747 1.01150 1.60680 1.22349 1.01598 1.52511 1.23373 0.87307 0.82549 0.81575 0.85332 1.92963 1.86770 1.93821 1.43971 1.86442 1.32601 1.53529 1.50093 1.18939 0.86376 0.93092 0.89545 1.23040 1.02430 1.02414 0.95771 1.22577 0.88196 0.92319 0.98019 1.67059 1.30611 1.05922 1.17673 1.21174 0.90216 0.92709 0.92517 1.98404 1.56968 1.50648 1.94115 1.20989 0.94478 1.01649 1.03600 0.92871 0.96682 0.96416 0.92154 0.93260 0.90289 0.94319 0.80885 0.80822 0.81257 0.83255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -1.93 5.41 -26.73 -0.14 -2.08 16 11 C 0.06 0.83 5.59 -3.82 -0.02 0.81 16 12 N -0.73 -8.48 4.32 -118.16 -0.51 -8.99 16 13 C 0.41 4.36 4.41 60.07 0.27 4.63 16 14 H 0.13 1.06 7.97 -51.93 -0.41 0.65 16 15 F -0.19 -2.39 15.51 2.25 0.03 -2.36 16 16 O -0.31 -3.44 10.33 -18.93 -0.20 -3.63 16 17 C 0.17 1.99 6.47 -38.83 -0.25 1.74 16 18 C -0.22 -2.49 8.21 -39.30 -0.32 -2.82 16 19 C 0.14 1.61 11.17 -17.60 -0.20 1.42 16 20 N -0.50 -6.24 10.34 -10.43 -0.11 -6.35 16 21 C 0.20 2.30 7.27 -17.49 -0.13 2.17 16 22 Cl -0.03 -0.30 29.10 -51.86 -1.51 -1.81 16 23 C -0.19 -1.99 9.84 -39.26 -0.39 -2.38 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.18 8.10 -51.93 -0.42 0.75 16 30 H 0.04 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.37 3.99 8.73 -39.29 -0.34 3.65 16 32 H 0.17 2.11 5.10 -52.49 -0.27 1.84 16 33 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 314.39 15.07 4.74 4.74 Total: -1.00 -29.80 314.39 -7.51 -37.31 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.94 Total: -0.37 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.73 Total: -9.19 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.12 Total: -40.86 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.20 Total: -3.63 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.03 Total: -2.36 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.51 Total: -1.81 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.80 -7.51 -37.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.161 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds