Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99673 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.46807 * 45.00301 * 13 12 11 15 15 F 1.39901 * 109.47474 * 284.99906 * 13 12 11 16 16 O 1.42910 * 109.46887 * 165.00172 * 13 12 11 17 17 C 1.35742 * 116.99844 * 60.00020 * 16 13 12 18 18 C 1.39322 * 120.83818 * 359.72262 * 17 16 13 19 19 C 1.37916 * 119.11836 * 179.72385 * 18 17 16 20 20 N 1.32001 * 120.84104 * 0.56122 * 19 18 17 21 21 C 1.32039 * 121.84462 * 359.71462 * 20 19 18 22 22 Cl 1.73599 * 119.60652 * 180.02562 * 21 20 19 23 23 C 1.38164 * 120.78903 * 359.97438 * 21 20 19 24 24 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 26 26 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 27 27 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 28 28 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 31 31 H 1.00895 * 111.00438 * 303.95603 * 12 11 10 32 32 H 1.07998 * 120.44077 * 0.02562 * 18 17 16 33 33 H 1.08007 * 119.58064 * 180.27106 * 19 18 17 34 34 H 1.07997 * 120.45642 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7342 -7.3950 -0.0018 14 1 0.9220 -7.3677 -0.7282 15 9 1.2123 -7.6425 1.2724 16 8 2.6510 -8.4341 -0.3511 17 6 3.7280 -8.6033 0.4577 18 6 3.9199 -7.7883 1.5713 19 6 5.0235 -7.9951 2.3721 20 7 5.8973 -8.9430 2.0885 21 6 5.7536 -9.7318 1.0395 22 17 6.9381 -10.9604 0.7216 23 6 4.6711 -9.5919 0.1924 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 0.8886 30 1 0.8537 -5.0446 -0.8913 31 1 3.0695 -6.0363 -0.7831 32 1 3.2112 -7.0082 1.8070 33 1 5.1772 -7.3705 3.2397 34 1 4.5586 -10.2404 -0.6638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = -82.836430 kcal Electronic energy + Delta-G solvation = -19839.372453 eV Core-core repulsion = 16325.928327 eV Total energy + Delta-G solvation = -3513.444126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.08136 -41.64822 -39.56004 -37.67631 -37.37470 -35.27063 -33.09430 -32.46194 -32.05994 -28.52859 -26.19490 -24.83216 -24.31471 -23.42597 -22.02783 -20.07955 -18.92767 -18.43105 -17.87345 -17.59365 -17.16652 -16.53499 -16.37901 -16.20811 -15.87299 -15.43724 -15.09828 -14.89001 -14.51489 -14.29990 -14.23031 -13.90362 -13.64938 -13.09972 -12.75544 -12.66943 -12.60123 -12.48488 -12.37879 -12.33323 -11.57519 -11.39546 -11.16791 -10.84575 -10.53796 -10.35223 -10.12459 -9.76842 -8.19914 -6.30113 -0.15082 0.08053 0.62923 1.41378 1.43349 1.51221 1.64555 2.40019 2.50184 2.57940 3.14076 3.36901 3.50375 3.56408 3.87388 3.92025 4.02570 4.17068 4.27940 4.48304 4.59757 4.66088 4.86557 4.95291 5.00766 5.18469 5.22951 5.45465 5.58425 5.63574 5.76784 5.87581 6.16640 6.26521 6.66279 6.87331 7.39326 8.91531 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.002866 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.467464 B = 9768.575304 C =10445.741434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.075 3.925 12 N -0.726 5.726 13 C 0.413 3.587 14 H 0.161 0.839 15 F -0.205 7.205 16 O -0.311 6.311 17 C 0.165 3.835 18 C -0.221 4.221 19 C 0.141 3.859 20 N -0.518 5.518 21 C 0.188 3.812 22 Cl -0.021 7.021 23 C -0.183 4.183 24 H 0.263 0.737 25 H -0.004 1.004 26 H -0.007 1.007 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.375 0.625 32 H 0.169 0.831 33 H 0.190 0.810 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.652 -20.880 -0.564 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.053 4.053 12 N -0.372 5.372 13 C 0.252 3.748 14 H 0.177 0.823 15 F -0.186 7.186 16 O -0.222 6.222 17 C 0.112 3.888 18 C -0.241 4.241 19 C -0.015 4.015 20 N -0.233 5.233 21 C 0.024 3.976 22 Cl 0.008 6.992 23 C -0.204 4.204 24 H 0.072 0.928 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.199 0.801 32 H 0.186 0.814 33 H 0.206 0.794 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.314 -21.138 0.440 22.719 hybrid contribution -0.836 1.171 -1.114 1.820 sum 7.478 -19.967 -0.674 21.332 Atomic orbital electron populations 1.70072 1.07693 1.27792 1.51744 1.25931 0.95729 1.03215 0.94846 0.85568 0.78328 0.78419 0.79159 1.19192 1.20990 1.19318 1.21682 0.93560 0.92497 1.50406 0.92266 1.18959 0.94419 0.92811 0.95083 1.21351 0.98047 0.92304 1.01214 1.21888 0.93386 0.88601 1.01440 1.60463 1.22028 1.01495 1.53167 1.23648 0.87746 0.81689 0.81695 0.82305 1.92947 1.86874 1.93846 1.44975 1.86462 1.32470 1.53415 1.49892 1.19090 0.86714 0.93352 0.89676 1.23018 1.02505 1.02485 0.96118 1.22908 0.87823 0.92202 0.98517 1.67093 1.31283 1.06582 1.18345 1.21392 0.90760 0.92915 0.92577 1.98404 1.56623 1.50159 1.94031 1.21159 0.93856 1.01542 1.03876 0.92803 0.98598 0.98868 0.92688 0.92601 0.91002 0.93150 0.80069 0.81407 0.79360 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 13.29 21.45 0.28 -55.12 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.23 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.29 5.41 30.60 0.17 -3.12 16 11 C 0.07 2.02 5.59 86.31 0.48 2.50 16 12 N -0.73 -15.59 4.32 -627.93 -2.71 -18.30 16 13 C 0.41 7.82 4.41 127.69 0.56 8.38 16 14 H 0.16 2.12 7.97 -2.39 -0.02 2.10 16 15 F -0.20 -4.74 15.51 44.97 0.70 -4.05 16 16 O -0.31 -6.11 10.33 -90.66 -0.94 -7.05 16 17 C 0.16 3.51 6.47 22.76 0.15 3.65 16 18 C -0.22 -4.83 8.21 22.45 0.18 -4.65 16 19 C 0.14 2.99 11.17 84.59 0.95 3.94 16 20 N -0.52 -12.44 10.34 -186.92 -1.93 -14.37 16 21 C 0.19 4.12 7.27 84.64 0.62 4.74 16 22 Cl -0.02 -0.39 29.10 -2.72 -0.08 -0.47 16 23 C -0.18 -3.63 9.84 22.48 0.22 -3.40 16 24 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 25 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.07 2.08 8.10 -2.39 -0.02 2.06 16 30 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 31 H 0.37 7.30 8.73 -89.70 -0.78 6.52 16 32 H 0.17 3.90 5.10 -2.91 -0.01 3.88 16 33 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -63.51 314.39 1.87 -61.64 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.35 Total: 8.09 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.17 Total: -15.67 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -4.36 Total: -87.80 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.94 Total: -7.05 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.70 Total: -4.05 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -63.51 1.87 -61.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.194 kcal (2) G-P(sol) polarization free energy of solvation -63.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds