Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48492 * 109.46854 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00392 * 3 2 1 6 6 H 1.48498 * 109.46692 * 60.00365 * 3 2 1 7 7 C 1.37875 * 119.99408 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99491 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00542 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47242 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47006 * 179.97438 * 11 10 9 13 13 C 1.46903 * 110.99673 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.46807 * 45.00301 * 13 12 11 15 15 F 1.39901 * 109.47474 * 284.99906 * 13 12 11 16 16 O 1.42910 * 109.46887 * 165.00172 * 13 12 11 17 17 C 1.35931 * 116.99941 * 60.00255 * 16 13 12 18 18 C 1.39164 * 120.45538 * 179.72320 * 17 16 13 19 19 C 1.38495 * 118.38762 * 179.78066 * 18 17 16 20 20 C 1.38414 * 119.20924 * 0.51660 * 19 18 17 21 21 Cl 1.73600 * 119.57407 * 179.70190 * 20 19 18 22 22 N 1.31926 * 120.84968 * 359.71909 * 20 19 18 23 23 C 1.31878 * 121.76662 * 0.02562 * 22 20 19 24 24 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47390 * 60.00123 * 9 7 2 26 26 H 1.09001 * 109.46948 * 299.99764 * 9 7 2 27 27 H 1.09001 * 109.47502 * 60.00161 * 10 9 7 28 28 H 1.09001 * 109.47289 * 299.99957 * 10 9 7 29 29 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 30 30 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 31 31 H 1.00895 * 111.00438 * 303.95603 * 12 11 10 32 32 H 1.07994 * 120.80666 * 0.02562 * 18 17 16 33 33 H 1.08000 * 120.39690 * 180.23620 * 19 18 17 34 34 H 1.07996 * 119.65393 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7342 -7.3950 -0.0018 14 1 0.9220 -7.3677 -0.7282 15 9 1.2123 -7.6425 1.2724 16 8 2.6510 -8.4341 -0.3511 17 6 3.7295 -8.6036 0.4588 18 6 4.6649 -9.5980 0.1891 19 6 5.7497 -9.7298 1.0399 20 6 5.8615 -8.8819 2.1282 21 17 7.2134 -9.0438 3.2052 22 7 4.9538 -7.9525 2.3578 23 6 3.9095 -7.7920 1.5685 24 1 -0.4850 0.8400 0.0004 25 1 0.6239 -2.5568 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.8718 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8905 29 1 0.8531 -5.0451 0.8886 30 1 0.8537 -5.0446 -0.8913 31 1 3.0695 -6.0363 -0.7831 32 1 4.5498 -10.2486 -0.6652 33 1 6.4971 -10.4881 0.8590 34 1 3.1868 -7.0203 1.7889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157640832.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -62.532742 kcal Electronic energy + Delta-G solvation = -19869.205060 eV Core-core repulsion = 16356.641367 eV Total energy + Delta-G solvation = -3512.563692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 288.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.15799 -40.81943 -38.58509 -36.71031 -36.09174 -33.43678 -32.71760 -31.11577 -30.38787 -26.90364 -24.88980 -24.06438 -22.98656 -22.36401 -20.42925 -18.96432 -18.06861 -17.39302 -16.91682 -16.37362 -16.26296 -15.50283 -14.97741 -14.69960 -14.47317 -14.18977 -13.87788 -13.59889 -13.56089 -13.36928 -12.83882 -12.57860 -12.33584 -11.83632 -11.62116 -11.49959 -11.46550 -10.92400 -10.75629 -10.55021 -10.16664 -9.85885 -9.80931 -9.46065 -9.13869 -9.02910 -8.60327 -8.39238 -6.04252 -4.06601 0.69666 0.87499 1.64337 2.47300 3.29475 3.36653 3.37376 3.41508 3.50680 4.19199 4.33015 4.33594 4.43963 4.57312 4.75577 4.87540 5.19281 5.32084 5.38959 5.44847 5.49760 5.62096 6.03305 6.06361 6.27788 6.44709 6.57216 6.82847 6.99125 7.13695 7.51711 7.60945 7.73102 7.94951 8.37228 9.00447 9.58080 11.07176 Molecular weight = 288.08amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.003152 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.578939 B = 8881.294932 C = 9966.841866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.729 5.729 13 C 0.410 3.590 14 H 0.131 0.869 15 F -0.194 7.194 16 O -0.314 6.314 17 C 0.070 3.930 18 C -0.092 4.092 19 C -0.128 4.128 20 C 0.141 3.859 21 Cl -0.036 7.036 22 N -0.447 5.447 23 C 0.079 3.921 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.018 0.982 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.368 0.632 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.181 -22.197 -0.776 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.374 5.374 13 C 0.249 3.751 14 H 0.147 0.853 15 F -0.176 7.176 16 O -0.227 6.227 17 C 0.023 3.977 18 C -0.118 4.118 19 C -0.148 4.148 20 C -0.023 4.023 21 Cl -0.008 7.008 22 N -0.158 5.158 23 C -0.080 4.080 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.036 0.964 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.192 0.808 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 8.256 -21.699 0.551 23.223 hybrid contribution 0.057 0.546 -1.287 1.399 sum 8.313 -21.154 -0.736 22.740 Atomic orbital electron populations 1.69969 1.06069 1.26569 1.50906 1.25025 0.94860 0.99340 0.95261 0.86527 0.80157 0.83703 0.77592 1.19691 1.21040 1.20952 1.21257 0.93120 0.90932 1.50533 0.92555 1.19065 0.93913 0.91230 0.97301 1.21651 0.99329 0.92188 1.01259 1.22266 0.93665 0.89699 1.01178 1.60664 1.22455 1.01738 1.52523 1.23395 0.87509 0.82655 0.81575 0.85278 1.92964 1.86803 1.93837 1.43997 1.86472 1.32644 1.53549 1.49993 1.19996 0.88693 0.96655 0.92359 1.20891 0.92479 0.97547 1.00882 1.21615 0.99015 1.00380 0.93830 1.21624 0.92377 0.95601 0.92688 1.98397 1.41062 1.96591 1.64737 1.67056 1.01492 1.17841 1.29416 1.23805 0.95588 0.98793 0.89805 0.93022 0.96671 0.96378 0.92083 0.93272 0.90233 0.94267 0.80841 0.83103 0.83196 0.78863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.02 5.41 -26.73 -0.14 -2.16 16 11 C 0.06 0.87 5.59 -3.82 -0.02 0.84 16 12 N -0.73 -8.90 4.31 -118.16 -0.51 -9.41 16 13 C 0.41 4.41 4.41 60.07 0.27 4.68 16 14 H 0.13 1.07 7.97 -51.93 -0.41 0.65 16 15 F -0.19 -2.49 15.47 2.25 0.03 -2.45 16 16 O -0.31 -3.38 10.33 -19.52 -0.20 -3.58 16 17 C 0.07 0.80 6.45 -39.08 -0.25 0.54 16 18 C -0.09 -0.84 10.13 -39.14 -0.40 -1.24 16 19 C -0.13 -1.17 9.87 -39.42 -0.39 -1.56 16 20 C 0.14 1.69 7.27 -17.45 -0.13 1.56 16 21 Cl -0.04 -0.39 29.10 -51.86 -1.51 -1.90 16 22 N -0.45 -6.38 10.33 -10.24 -0.11 -6.48 16 23 C 0.08 1.06 9.32 -17.38 -0.16 0.90 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.04 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.37 4.11 8.73 -39.29 -0.34 3.76 16 32 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.19 2.78 4.93 -52.49 -0.26 2.52 16 LS Contribution 314.25 15.07 4.74 4.74 Total: -1.00 -30.71 314.25 -7.55 -38.26 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -3.93 Total: -0.54 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.78 Total: -9.29 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.12 Total: -41.71 kcal Atomic # 8 Polarization: -3.38 SS G_CDS: -0.20 Total: -3.58 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.03 Total: -2.45 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.71 -7.55 -38.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157640832.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.268 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds